RchiOBHm_Chr2g0107551

Core-2/I-Branching enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002928
Physical Location & Seq
Reverse (-)
18889413 .. 18892074
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48157

Sequence Viewer

Length: 444 bp
ATGGATCCTGTTATTCCTGTACAAAACTGGAGAAAAGGATCTCAGTGGGTTGTATTGACGAGGAAGCATGCAGAGGTTGTAGTGAAAGTCGATACAGTGTTTCCTATGTTTCAGTTGTATTGTAAGAGGAAGTCGTTACCTGAGTTTTGGCGGGATCATCCTGTTCCGGCCGATAACTCCAAGGAGCACAATTGCATTCCAGACGAGCATTATGTTCAGACATTACTGGCTGATGTAGATAATATCTACTATGAGACCGAGTATCGAAGAGAATGGTGTAGCAGCAAGGAGAAACCCTCTCCATGCTTTCTTTTTGCCAAAAAATTTACCCGGCCTGCTGCTCTCAGGCTTCTCAACACGGTAACATTCAAAATTTTTGTCAATGTTCTAGCTTTTGCTAGGATTTTTTCTAATGTATTTTTGTCAAGGAGTCCCGTAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

147

Amino Acids

17.28

Weight (kDa)

9.25

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 1 - 78 1e-15 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 151
AclWI GGATC 3 cut(s) 12, 46, 162
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 2 cut(s) 323, 372
AfaI GTAC 1 cut(s) 21
AgsI TTSAA 1 cut(s) 370
AluBI AGCT 1 cut(s) 392
AluI AGCT 1 cut(s) 392
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 3 cut(s) 12, 46, 162
AoxI GGCC 2 cut(s) 168, 332
ApeKI GCWGC 2 cut(s) 282, 338
ApoI RAATTY 2 cut(s) 323, 372
ArsI GACNNNNNNTTYG 2 cut(s) 363, 395
AsuC2I CCSGG 1 cut(s) 331
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 294, 325
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 2 cut(s) 389, 399
BisI GCNGC 2 cut(s) 283, 339
BlsI GCNGC 2 cut(s) 284, 340
Bme1390I CCNGG 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 331
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 180
Bse1I ACTGG 2 cut(s) 32, 231
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 3 cut(s) 56, 132, 358
BseNI ACTGG 2 cut(s) 32, 231
BseX3I CGGCCG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 294, 325
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 170, 334
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 167, 331
BslFI GGGAC 1 cut(s) 417
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 417
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 2 cut(s) 170, 334
Bso31I GGTCTC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 189
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 3 cut(s) 4, 38, 154
BspACI CCGC 1 cut(s) 151
BspANI GGCC 2 cut(s) 170, 334
BspCNI CTCAG 3 cut(s) 55, 133, 357
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 3 cut(s) 12, 46, 162
BspTNI GGTCTC 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 19
BsrI ACTGG 2 cut(s) 32, 231
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 3 cut(s) 4, 38, 154
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 97, 361
Bst6I CTCTTC 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 69, 336
BstDEI CTNAG 3 cut(s) 42, 141, 344
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 3 cut(s) 7, 41, 157
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 3 cut(s) 4, 38, 154
BstMCI CGRYCG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 294, 325
BstX2I RGATCY 2 cut(s) 4, 38
BstYI RGATCY 2 cut(s) 4, 38
BstZI CGGCCG 1 cut(s) 168
BsuRI GGCC 2 cut(s) 170, 334
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 50, 102
Cac8I GCNNGC 2 cut(s) 69, 336
Csp6I GTAC 1 cut(s) 20
CviAII CATG 2 cut(s) 68, 303
CviJI RGCY 5 cut(s) 170, 230, 334, 349, 392
CviKI_1 RGCY 5 cut(s) 170, 230, 334, 349, 392
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 3 cut(s) 42, 141, 344
DpnI GATC 3 cut(s) 6, 40, 156
DpnII GATC 3 cut(s) 4, 38, 154
EaeI YGGCCR 1 cut(s) 168
EagI CGGCCG 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
EclXI CGGCCG 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 248
Eco52I CGGCCG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 2 cut(s) 71, 306
FaiI YATR 5 cut(s) 69, 107, 213, 252, 304
FaqI GGGAC 1 cut(s) 417
FatI CATG 2 cut(s) 67, 302
FauI CCCGC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 283, 339
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 283, 339
FspBI CTAG 2 cut(s) 389, 399
GluI GCNGC 2 cut(s) 283, 339
GsuI CTGGAG 1 cut(s) 49
HaeIII GGCC 2 cut(s) 170, 334
HapII CCGG 2 cut(s) 167, 331
Hin1II CATG 2 cut(s) 71, 306
HinfI GANTC 1 cut(s) 430
HpaII CCGG 2 cut(s) 167, 331
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 97, 361
HpyCH4V TGCA 2 cut(s) 71, 195
HpyF3I CTNAG 3 cut(s) 42, 141, 344
Hsp92II CATG 2 cut(s) 71, 306
Kzo9I GATC 3 cut(s) 4, 38, 154
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 2 cut(s) 294, 325
MaeI CTAG 2 cut(s) 389, 399
MaeIII GTNAC 2 cut(s) 135, 361
MalI GATC 3 cut(s) 6, 40, 156
MboI GATC 3 cut(s) 4, 38, 154
MboII GAAGA 1 cut(s) 279
MfeI CAATTG 1 cut(s) 190
MflI RGATCY 2 cut(s) 4, 38
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 3 cut(s) 190, 323, 372
MlyI GAGTC 1 cut(s) 439
MnlI CCTC 4 cut(s) 54, 67, 120, 307
MspI CCGG 2 cut(s) 167, 331
MspR9I CCNGG 1 cut(s) 331
MunI CAATTG 1 cut(s) 190
Mva1269I GAATGC 1 cut(s) 195
NciI CCSGG 1 cut(s) 331
NdeII GATC 3 cut(s) 4, 38, 154
NlaIII CATG 2 cut(s) 71, 306
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 71
PaeI GCATGC 1 cut(s) 71
PctI GAATGC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 284, 340
PleI GAGTC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 4, 38
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SatI GCNGC 2 cut(s) 283, 339
Sau3AI GATC 3 cut(s) 4, 38, 154
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 1 cut(s) 331
SduI GDGCHC 1 cut(s) 189
SetI ASST 3 cut(s) 78, 142, 394
SphI GCATGC 1 cut(s) 71
Sse9I AATT 3 cut(s) 190, 323, 372
SsiI CCGC 1 cut(s) 151
SspMI CTAG 2 cut(s) 389, 399
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 97, 361
TaqI TCGA 2 cut(s) 90, 265
TaqII GACCGA 1 cut(s) 272
TasI AATT 3 cut(s) 190, 323, 372
TatI WGTACW 1 cut(s) 19
TscAI CASTG 2 cut(s) 50, 102
TseI GCWGC 2 cut(s) 282, 338
TspRI CASTG 2 cut(s) 50, 102
XapI RAATTY 2 cut(s) 323, 372
XceI RCATGY 1 cut(s) 71
XspI CTAG 2 cut(s) 389, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.