Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002928

Physical Location & Seq

Genomic Coordinates Reverse (-)

1360958 .. 1364162

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAAGCGGAAGGCGGGTCCGCAGAAAGCGCAGCAAAAATGGAAGAGGAAGCCTTTGGCTTTGATTCTGGTGGGGCTCTGCTTCGGGGCGTTGGTGCTGCTGATGCACACTCGCTACAGTCGGATTATGACACTCGTTTCGTTGCGAAATTCTCAGCAAAATCAACGGCCTAAGATCGCCTTCTTGTTCATCGCTCGCAATCGCATTCCGTTAGACGTTCTTTGGGATGTTTTCTTTCAGGGAGAGGAGAGTAGGTTTTCGATTTATGTTCACTCGAGGCCGGGGTTTCTGTTCAACAAGGCCACCACAAGATCAGTTTTTTTCTTGAATCGTCAAGTAAATGATAGTATACAGGTAGATTGGGGAGAAGCAAGCATGATTGAAGCAGAGCGTATATTACTCAGACACGCACTCGAGGATCCTCTTAATCAACGCTTTGCCTTTGTTTCTGATAGCTGCATTCCCCTTTACAATTTCAGCTATATATATGACTACATCATGTCAGCAAGAACCAGTTTCGTAGACAGCTTTGCAGATACGAAAGAGGGCCGCTACAATCCAAAAATGCATCCTGCAATTCCTGTCCATAACTGGAGAAAAGGATCACAGTGGACCGTTTTGACCAGGAAGCATGCCGAGGTTGTAGTGAAAGACGATACAGTCTTCCCTATGTTTCAATTGCACTGCAAGAGAAAATCGCTACCTGAGTTTTGGCGGGATCGTCCCATTCCCGCTGATACATCCAAGGAGCACAATTGTATTCCGGACGAGCATTATGTTCAGACATTGCTGGCTCAAGAAGGCCTTGAAGGAGAACTCACACGTAGATCACTGACACACACGTCGTGGGATTTATCATCCTCTAGAGACCATGAACGCCGTGGATGGCACCCTTTGACTTACAAATATTCAGATGCTACTCCCATGCTTATTAAATCTATAAAGGAGATAGATAATGTCTACTACGAGACTGAATACCGGAGAGAATGGTGTAGCAGCAAGGGAAAACCATCTCGGTGCTTTCTTTTTGCTCGAAAATTTACCCGCCCTGCTGCTCTCAGGCTTCTTAACACGACTGCACTGAAACTCAACCGGAGCAACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

369

Amino Acids

43.26

Weight (kDa)

9.74

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14550 AT5G14550 AT5G14550 AT5G14550
fragaria_vesca	FvH4_6g51390 FvH4_6g51390
malus_domestica	MD09G1028600.v1.1 MD17G1030200.v1.1
prunus_persica	Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1
pyrus_communis	pycom111g02270 pycom17g02760
rosa_chinensis	RchiOBHm_Chr2g0105161 RchiOBHm_Chr2g0107551 RchiOBHm_Chr2g0129161 RchiOBHm_Chr2g0173071 RchiOBHm_Chr3g0491531
rosa_laevigata	RLG00000014988 RLG00000022155
rosa_multiflora	Rmu_sc0008633.1_g000003 Rmu_sc0010388.1_g000002 Rmu_sc0011236.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079270 Rroxscaffold_7G00191080
rosa_rugosa	Rorug02G0564900 Rorug02G0565000
rosa_samantha	Rh2AG644800 Rh2BG655600 Rh2CG199900 Rh2CG620700 Rh2DG668900 Rh3AG299000 Rh4AG023800 Rh5AG168600 Rh5AG303700 Rh7AG291800
rosa_wichuraiana	Rw2G052960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	659, 841
AccB1I	GGYRCC	1 cut(s)	888
AccI	GTMKAC	3 cut(s)	349, 522, 960
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	7 cut(s)	7, 14, 20, 550, 715, 732, 1045
AclWI	GGATC	4 cut(s)	413, 426, 610, 726
AcsI	RAATTY	2 cut(s)	148, 1037
AdeI	CACNNNGTG	1 cut(s)	846
AflIII	ACRYGT	2 cut(s)	821, 840
AgsI	TTSAA	5 cut(s)	295, 328, 383, 677, 809
AjiI	CACGTC	1 cut(s)	843
AjnI	CCWGG	1 cut(s)	623
AluBI	AGCT	3 cut(s)	456, 480, 528
AluI	AGCT	3 cut(s)	456, 480, 528
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	2 cut(s)	861, 962
AlwI	GGATC	4 cut(s)	413, 426, 610, 726
Ama87I	CYCGRG	2 cut(s)	274, 413
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	5 cut(s)	167, 278, 300, 547, 802
ApeKI	GCWGC	5 cut(s)	31, 97, 456, 996, 1052
ApoI	RAATTY	2 cut(s)	148, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	17, 547, 612
AsuC2I	CCSGG	1 cut(s)	282
AvaI	CYCGRG	2 cut(s)	274, 413
AvaII	GGWCC	2 cut(s)	17, 612
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	888
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	655
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	5 cut(s)	43, 84, 443, 1008, 1039
BccI	CCATC	2 cut(s)	879, 1018
BceAI	ACGGC	2 cut(s)	182, 864
BciT130I	CCWGG	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	861, 962
BfaI	CTAG	1 cut(s)	864
BfmI	CTRYAG	1 cut(s)	115
BisI	GCNGC	6 cut(s)	32, 98, 457, 550, 997, 1053
BlsI	GCNGC	6 cut(s)	33, 99, 458, 551, 998, 1054
Bme1390I	CCNGG	2 cut(s)	282, 625
Bme18I	GGWCC	2 cut(s)	17, 612
BmeT110I	CYCGRG	2 cut(s)	274, 413
BmgBI	CACGTC	1 cut(s)	843
BmgT120I	GGNCC	3 cut(s)	17, 547, 612
BmiI	GGNNCC	3 cut(s)	18, 420, 890
BmrFI	CCNGG	2 cut(s)	282, 625
BmsI	GCATC	3 cut(s)	93, 577, 904
BpiI	GAAGAC	1 cut(s)	655
BpmI	CTGGAG	1 cut(s)	613
BpuEI	CTTGAG	1 cut(s)	780
BpuMI	CCSGG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	824
BsaI	GGTCTC	1 cut(s)	861
BsaJI	CCNNGG	4 cut(s)	281, 636, 744, 880
BsaWI	WCCGGW	3 cut(s)	763, 978, 1092
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bse1I	ACTGG	2 cut(s)	513, 596
Bse3DI	GCAATG	1 cut(s)	785
BseAI	TCCGGA	1 cut(s)	763
BseBI	CCWGG	1 cut(s)	625
BseDI	CCNNGG	4 cut(s)	281, 636, 744, 880
BseGI	GGATG	5 cut(s)	232, 568, 740, 857, 890
BseMI	GCAATG	1 cut(s)	785
BseMII	CTCAG	4 cut(s)	167, 415, 696, 1072
BseNI	ACTGG	2 cut(s)	513, 596
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	5 cut(s)	43, 84, 443, 1008, 1039
BsgI	GTGCAG	1 cut(s)	1062
BshFI	GGCC	5 cut(s)	169, 280, 302, 549, 804
BshNI	GGYRCC	1 cut(s)	888
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	2 cut(s)	274, 413
BsiSI	CCGG	4 cut(s)	281, 764, 979, 1093
BslFI	GGGAC	1 cut(s)	708
BsmAI	GTCTC	2 cut(s)	861, 962
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	2 cut(s)	204, 459
BsnI	GGCC	5 cut(s)	169, 280, 302, 549, 804
Bso31I	GGTCTC	1 cut(s)	861
BsoBI	CYCGRG	2 cut(s)	274, 413
Bsp1286I	GDGCHC	2 cut(s)	78, 753
Bsp13I	TCCGGA	1 cut(s)	763
Bsp143I	GATC	6 cut(s)	174, 311, 418, 602, 718, 827
BspACI	CCGC	7 cut(s)	7, 14, 20, 550, 715, 732, 1045
BspANI	GGCC	5 cut(s)	169, 280, 302, 549, 804
BspCNI	CTCAG	4 cut(s)	166, 414, 697, 1071
BspEI	TCCGGA	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	18, 420, 890
BspPI	GGATC	4 cut(s)	413, 426, 610, 726
BspT107I	GGYRCC	1 cut(s)	888
BspTNI	GGTCTC	1 cut(s)	861
BsrDI	GCAATG	1 cut(s)	785
BsrI	ACTGG	2 cut(s)	513, 596
BssECI	CCNNGG	4 cut(s)	281, 636, 744, 880
BssMI	GATC	6 cut(s)	174, 311, 418, 602, 718, 827
BssNAI	GTATAC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	744
Bst1107I	GTATAC	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	625
Bst4CI	ACNGT	4 cut(s)	119, 609, 616, 661
Bst6I	CTCTTC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	824
BstC8I	GCNNGC	4 cut(s)	196, 373, 633, 792
BstDEI	CTNAG	5 cut(s)	153, 171, 401, 705, 1058
BstDSI	CCRYGG	1 cut(s)	880
BstF5I	GGATG	5 cut(s)	232, 568, 740, 857, 890
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	6 cut(s)	177, 314, 421, 605, 721, 830
BstMAI	GTCTC	2 cut(s)	861, 962
BstMBI	GATC	6 cut(s)	174, 311, 418, 602, 718, 827
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 103
BstNI	CCWGG	1 cut(s)	625
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	2 cut(s)	280, 623
BstSFI	CTRYAG	1 cut(s)	115
BstV1I	GCAGC	5 cut(s)	43, 84, 443, 1008, 1039
BstV2I	GAAGAC	1 cut(s)	655
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BstZ17I	GTATAC	1 cut(s)	350
BsuRI	GGCC	5 cut(s)	169, 280, 302, 549, 804
BtgI	CCRYGG	1 cut(s)	880
BtgZI	GCGATG	1 cut(s)	175
BtrI	CACGTC	1 cut(s)	843
BtsCI	GGATG	5 cut(s)	232, 568, 740, 857, 890
BtsI	GCAGTG	1 cut(s)	682
BtsIMutI	CAGTG	4 cut(s)	614, 682, 830, 1079
Cac8I	GCNNGC	4 cut(s)	196, 373, 633, 792
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	17, 547, 612
CviAII	CATG	5 cut(s)	376, 499, 632, 872, 925
DdeI	CTNAG	5 cut(s)	153, 171, 401, 705, 1058
DpnI	GATC	6 cut(s)	176, 313, 420, 604, 720, 829
DpnII	GATC	6 cut(s)	174, 311, 418, 602, 718, 827
DraIII	CACNNNGTG	1 cut(s)	846
DrdI	GACNNNNNNGTC	2 cut(s)	659, 841
DseDI	GACNNNNNNGTC	2 cut(s)	659, 841
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	744
Eco147I	AGGCCT	1 cut(s)	804
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	861
Eco47I	GGWCC	2 cut(s)	17, 612
Eco88I	CYCGRG	2 cut(s)	274, 413
EcoRII	CCWGG	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	744
EcoT22I	ATGCAT	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	5 cut(s)	379, 502, 635, 875, 928
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 789, 821
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	5 cut(s)	375, 498, 631, 871, 924
FauI	CCCGC	4 cut(s)	7, 708, 739, 1052
FblI	GTMKAC	3 cut(s)	349, 522, 960
Fnu4HI	GCNGC	6 cut(s)	32, 98, 457, 550, 997, 1053
FokI	GGATG	5 cut(s)	239, 555, 727, 844, 897
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	6 cut(s)	32, 98, 457, 550, 997, 1053
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	6 cut(s)	32, 98, 457, 550, 997, 1053
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	5 cut(s)	169, 280, 302, 549, 804
HapII	CCGG	4 cut(s)	281, 764, 979, 1093
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	5 cut(s)	379, 502, 635, 875, 928
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	2 cut(s)	64, 328
HpaII	CCGG	4 cut(s)	281, 764, 979, 1093
Hpy166II	GTNNAC	5 cut(s)	271, 350, 523, 612, 961
Hpy188I	TCNGA	5 cut(s)	123, 404, 451, 783, 913
Hpy188III	TCNNGA	4 cut(s)	325, 764, 797, 864
Hpy8I	GTNNAC	5 cut(s)	271, 350, 523, 612, 961
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	4 cut(s)	4, 190, 794, 803
HpyCH4III	ACNGT	4 cut(s)	119, 609, 616, 661
HpyCH4IV	ACGT	3 cut(s)	216, 823, 842
HpyCH4V	TGCA	8 cut(s)	106, 459, 533, 568, 575, 682, 687, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 103
HpyF3I	CTNAG	5 cut(s)	153, 171, 401, 705, 1058
HpySE526I	ACGT	3 cut(s)	216, 823, 842
Hsp92II	CATG	5 cut(s)	379, 502, 635, 875, 928
HspAI	GCGC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	763
Kzo9I	GATC	6 cut(s)	174, 311, 418, 602, 718, 827
LmnI	GCTCC	2 cut(s)	748, 1095
Lsp1109I	GCAGC	5 cut(s)	43, 84, 443, 1008, 1039
LweI	GCATC	3 cut(s)	93, 577, 904
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	3 cut(s)	216, 823, 842
MalI	GATC	6 cut(s)	176, 313, 420, 604, 720, 829
MboI	GATC	6 cut(s)	174, 311, 418, 602, 718, 827
MboII	GAAGA	2 cut(s)	55, 655
MfeI	CAATTG	2 cut(s)	677, 754
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	78, 753
MluCI	AATT	6 cut(s)	148, 472, 576, 677, 754, 1037
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	8 cut(s)	39, 238, 270, 409, 432, 538, 631, 871
Mph1103I	ATGCAT	1 cut(s)	570
MroI	TCCGGA	1 cut(s)	763
MseI	TTAA	4 cut(s)	426, 933, 1068, 1105
MslI	CAYNNNNRTG	1 cut(s)	1015
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	4 cut(s)	281, 764, 979, 1093
MspR9I	CCNGG	2 cut(s)	282, 625
MunI	CAATTG	2 cut(s)	677, 754
Mva1269I	GAATGC	2 cut(s)	204, 459
MvaI	CCWGG	1 cut(s)	625
MwoI	GCNNNNNNNGC	2 cut(s)	28, 103
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	6 cut(s)	174, 311, 418, 602, 718, 827
NlaIII	CATG	5 cut(s)	379, 502, 635, 875, 928
NlaIV	GGNNCC	3 cut(s)	18, 420, 890
NmeAIII	GCCGAG	1 cut(s)	661
NsiI	ATGCAT	1 cut(s)	570
NspI	RCATGY	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	635
PaeR7I	CTCGAG	2 cut(s)	274, 413
PceI	AGGCCT	1 cut(s)	804
PctI	GAATGC	2 cut(s)	204, 459
PfeI	GAWTC	2 cut(s)	64, 328
PkrI	GCNGC	6 cut(s)	33, 99, 458, 551, 998, 1054
Ppu21I	YACGTR	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	623
PspN4I	GGNNCC	3 cut(s)	18, 420, 890
PspPI	GGNCC	3 cut(s)	17, 547, 612
PspXI	VCTCGAGB	2 cut(s)	274, 413
PsuI	RGATCY	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	1015
SaqAI	TTAA	4 cut(s)	426, 933, 1068, 1105
SatI	GCNGC	6 cut(s)	32, 98, 457, 550, 997, 1053
Sau3AI	GATC	6 cut(s)	174, 311, 418, 602, 718, 827
Sau96I	GGNCC	3 cut(s)	17, 547, 612
ScrFI	CCNGG	2 cut(s)	282, 625
SduI	GDGCHC	2 cut(s)	78, 753
SfaNI	GCATC	3 cut(s)	93, 577, 904
SfcI	CTRYAG	1 cut(s)	115
Sfr274I	CTCGAG	2 cut(s)	274, 413
SinI	GGWCC	2 cut(s)	17, 612
SlaI	CTCGAG	2 cut(s)	274, 413
SmiMI	CAYNNNNRTG	1 cut(s)	1015
SmlI	CTYRAG	3 cut(s)	274, 413, 795
SmoI	CTYRAG	3 cut(s)	274, 413, 795
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	6 cut(s)	148, 472, 576, 677, 754, 1037
SseBI	AGGCCT	1 cut(s)	804
SsiI	CCGC	7 cut(s)	7, 14, 20, 550, 715, 732, 1045
SspI	AATATT	1 cut(s)	908
SspMI	CTAG	1 cut(s)	864
StuI	AGGCCT	1 cut(s)	804
StyD4I	CCNGG	2 cut(s)	280, 623
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	4 cut(s)	119, 609, 616, 661
TaiI	ACGT	3 cut(s)	219, 826, 845
TaqI	TCGA	4 cut(s)	260, 275, 414, 1033
TasI	AATT	6 cut(s)	148, 472, 576, 677, 754, 1037
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	2 cut(s)	64, 328
Tru1I	TTAA	4 cut(s)	426, 933, 1068, 1105
Tru9I	TTAA	4 cut(s)	426, 933, 1068, 1105
TscAI	CASTG	4 cut(s)	614, 689, 837, 1086
TseI	GCWGC	5 cut(s)	31, 97, 456, 996, 1052
TspDTI	ATGAA	3 cut(s)	17, 178, 888
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	4 cut(s)	614, 689, 837, 1086
VpaK11BI	GGWCC	2 cut(s)	17, 612
XapI	RAATTY	2 cut(s)	148, 1037
XbaI	TCTAGA	1 cut(s)	863
XceI	RCATGY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	878
XhoI	CTCGAG	2 cut(s)	274, 413
XmiI	GTMKAC	3 cut(s)	349, 522, 960
XspI	CTAG	1 cut(s)	864
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.