Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002928

Physical Location & Seq

Genomic Coordinates Reverse (-)

1842034 .. 1845527

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g02760.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAAGCGGAAGGCGGGTCCGCAGAAAGCGCAGCACAAATGGAAGAGGAAGCTGTTCACTTTGATTCTGGTGGGGATCTGCTTCGGGATGTTGGTGCTGCTGATGCACACTCAGTACAGTCGGATTATGAAGCTCGCTTCGTTGCGAAATTCTCAGCAAAATCAACGGCCCAAGATCGCCTTCTTGTTCATCGCTCGCAATCGCATTCCGTTGGACATTCTTTGGGATGTTTTCTTTCAGGGAGGGGAGAGTAGGTTTTCGATTTATGTTCACTCAAGGCCGGGGTTTCTGTTCAACAAGGCCACCACAAGATCGGTTTTTTTCTTGGATCGTCAAGTCAATGATAGTATACAGGTAGATTGGGGAGAAGCAAGCATGATTGAGGCAGAACGCATATTACTAAGACATGCACTCGGGGATCCTCTTAATCAACGCTTTGCCTTTGTTTCTGATAGCTGCATTCCCCTTTACAATTTCAGCTACATATATGACTACATCATGTCAACGAGAACCAGTTTTGTAGACAGCTTTGCTGATACGAAAGAGGCCCGCTACAATCCAAAAATGCATCCTGTTATTCCTGCTCATAACTGGAGAAAAGGATCACAGTGGGTTGTCTTGACCAGGAAGCATGCACAGGTTGTAGTGAAAGACGAAACAGTCTTTCCTATGTTTCAATTGCATTGCAAGACAAAATCGCTACCTGAGTTTTGGCGGAATCGTCCCATTCCCGCTGATACATCCAAGCAGCACAATTGTATCCCGGACGAGCATTATGTTCAGACATTACTGGCTCAACAAGGCCTTGAGGGAGAACTCACACGTAGATCGCTGACACACACGGCATGGGATTTATCATCCTCTAGAAACCGTGAACGCCGTGGATGGCACCCTTTGACTTACAAATTTTCAGATGCTACTCCCATGCTTATTAAATCTATAAAGGAGATAGATAATGTCTACTATGAGACTGAGCACCGGAGAGAATGGTGTAGCAGCAAGGGAAAACCATCTCAGTGCTTTCTTTTTGCTCGAAAATTTACCCGGCCTGCTGCTCTCAGGCTTCTTAACACGACTGCACTGGAACTTAACCGGAGCAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

369

Amino Acids

43.18

Weight (kDa)

9.92

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14550 AT5G14550 AT5G14550 AT5G14550
fragaria_vesca	FvH4_6g51390 FvH4_6g51390
malus_domestica	MD09G1028600.v1.1 MD17G1030200.v1.1
prunus_persica	Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1
pyrus_communis	pycom111g02270 pycom17g02760
rosa_chinensis	RchiOBHm_Chr2g0105161 RchiOBHm_Chr2g0107551 RchiOBHm_Chr2g0129161 RchiOBHm_Chr2g0173071 RchiOBHm_Chr3g0491531
rosa_laevigata	RLG00000014988 RLG00000022155
rosa_multiflora	Rmu_sc0008633.1_g000003 Rmu_sc0010388.1_g000002 Rmu_sc0011236.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079270 Rroxscaffold_7G00191080
rosa_rugosa	Rorug02G0564900 Rorug02G0565000
rosa_samantha	Rh2AG644800 Rh2BG655600 Rh2CG199900 Rh2CG620700 Rh2DG668900 Rh3AG299000 Rh4AG023800 Rh5AG168600 Rh5AG303700 Rh7AG291800
rosa_wichuraiana	Rw2G052960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	659
AccB1I	GGYRCC	1 cut(s)	888
AccI	GTMKAC	3 cut(s)	349, 522, 960
AciI	CCGC	6 cut(s)	7, 14, 20, 550, 715, 732
AclWI	GGATC	5 cut(s)	83, 336, 413, 426, 610
AcsI	RAATTY	3 cut(s)	148, 905, 1037
AfaI	GTAC	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	821
AgsI	TTSAA	2 cut(s)	295, 677
AjnI	CCWGG	1 cut(s)	623
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	5 cut(s)	52, 133, 456, 480, 528
AluI	AGCT	5 cut(s)	52, 133, 456, 480, 528
Alw21I	GWGCWC	1 cut(s)	978
Alw26I	GTCTC	1 cut(s)	962
AlwI	GGATC	5 cut(s)	83, 336, 413, 426, 610
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	6 cut(s)	167, 278, 300, 546, 802, 1046
ApeKI	GCWGC	6 cut(s)	31, 97, 456, 748, 996, 1052
ApoI	RAATTY	3 cut(s)	148, 905, 1037
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	17, 168, 547
AsuC2I	CCSGG	3 cut(s)	282, 764, 1045
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	742, 775
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	888
Bbv12I	GWGCWC	1 cut(s)	978
BbvI	GCAGC	6 cut(s)	43, 84, 443, 760, 1008, 1039
BccI	CCATC	2 cut(s)	879, 1018
BceAI	ACGGC	3 cut(s)	182, 858, 864
BciT130I	CCWGG	1 cut(s)	625
BciVI	GTATCC	1 cut(s)	770
BcnI	CCSGG	3 cut(s)	282, 764, 1045
BcoDI	GTCTC	1 cut(s)	962
BfaI	CTAG	1 cut(s)	864
BfuI	GTATCC	1 cut(s)	770
BisI	GCNGC	6 cut(s)	32, 98, 457, 749, 997, 1053
BlsI	GCNGC	6 cut(s)	33, 99, 458, 750, 998, 1054
Bme1390I	CCNGG	4 cut(s)	282, 625, 764, 1045
Bme18I	GGWCC	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	3 cut(s)	17, 168, 547
BmiI	GGNNCC	3 cut(s)	18, 420, 890
BmrFI	CCNGG	4 cut(s)	282, 625, 764, 1045
BmsI	GCATC	3 cut(s)	93, 577, 904
BpmI	CTGGAG	1 cut(s)	613
BpuEI	CTTGAG	2 cut(s)	259, 827
BpuMI	CCSGG	3 cut(s)	282, 764, 1045
BsaAI	YACGTR	1 cut(s)	824
BsaJI	CCNNGG	2 cut(s)	281, 880
BsaWI	WCCGGW	2 cut(s)	978, 1092
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bse1I	ACTGG	4 cut(s)	513, 596, 795, 1086
Bse3DI	GCAATG	2 cut(s)	682, 1105
BseBI	CCWGG	1 cut(s)	625
BseDI	CCNNGG	2 cut(s)	281, 880
BseGI	GGATG	6 cut(s)	93, 232, 568, 740, 857, 890
BseMI	GCAATG	2 cut(s)	682, 1105
BseMII	CTCAG	6 cut(s)	125, 167, 696, 963, 1028, 1072
BseNI	ACTGG	4 cut(s)	513, 596, 795, 1086
BseXI	GCAGC	6 cut(s)	43, 84, 443, 760, 1008, 1039
BsgI	GTGCAG	1 cut(s)	1062
BshFI	GGCC	6 cut(s)	169, 280, 302, 548, 804, 1048
BshNI	GGYRCC	1 cut(s)	888
BsiHKAI	GWGCWC	1 cut(s)	978
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	5 cut(s)	281, 764, 979, 1045, 1093
BslFI	GGGAC	1 cut(s)	708
BsmAI	GTCTC	1 cut(s)	962
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	2 cut(s)	204, 459
BsnI	GGCC	6 cut(s)	169, 280, 302, 548, 804, 1048
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	978
Bsp143I	GATC	7 cut(s)	75, 174, 311, 328, 418, 602, 827
BspACI	CCGC	6 cut(s)	7, 14, 20, 550, 715, 732
BspANI	GGCC	6 cut(s)	169, 280, 302, 548, 804, 1048
BspCNI	CTCAG	6 cut(s)	124, 166, 697, 964, 1027, 1071
BspLI	GGNNCC	3 cut(s)	18, 420, 890
BspPI	GGATC	5 cut(s)	83, 336, 413, 426, 610
BspT107I	GGYRCC	1 cut(s)	888
BsrDI	GCAATG	2 cut(s)	682, 1105
BsrI	ACTGG	4 cut(s)	513, 596, 795, 1086
BssECI	CCNNGG	2 cut(s)	281, 880
BssMI	GATC	7 cut(s)	75, 174, 311, 328, 418, 602, 827
BssNAI	GTATAC	1 cut(s)	350
Bst1107I	GTATAC	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	625
Bst4CI	ACNGT	4 cut(s)	119, 609, 661, 872
Bst6I	CTCTTC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	824
BstC8I	GCNNGC	6 cut(s)	135, 196, 373, 550, 633, 1050
BstDEI	CTNAG	7 cut(s)	111, 153, 401, 705, 972, 1014, 1058
BstDSI	CCRYGG	1 cut(s)	880
BstF5I	GGATG	6 cut(s)	93, 232, 568, 740, 857, 890
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	7 cut(s)	78, 177, 314, 331, 421, 605, 830
BstMAI	GTCTC	1 cut(s)	962
BstMBI	GATC	7 cut(s)	75, 174, 311, 328, 418, 602, 827
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 103
BstNI	CCWGG	1 cut(s)	625
BstNSI	RCATGY	2 cut(s)	410, 635
BstSCI	CCNGG	4 cut(s)	280, 623, 762, 1043
BstV1I	GCAGC	6 cut(s)	43, 84, 443, 760, 1008, 1039
BstX2I	RGATCY	2 cut(s)	75, 418
BstYI	RGATCY	2 cut(s)	75, 418
BstZ17I	GTATAC	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	770
BsuRI	GGCC	6 cut(s)	169, 280, 302, 548, 804, 1048
BtgI	CCRYGG	1 cut(s)	880
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	6 cut(s)	93, 232, 568, 740, 857, 890
BtsIMutI	CAGTG	3 cut(s)	614, 1022, 1079
Cac8I	GCNNGC	6 cut(s)	135, 196, 373, 550, 633, 1050
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	17, 168, 547
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	6 cut(s)	376, 407, 499, 632, 846, 925
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	7 cut(s)	111, 153, 401, 705, 972, 1014, 1058
DpnI	GATC	7 cut(s)	77, 176, 313, 330, 420, 604, 829
DpnII	GATC	7 cut(s)	75, 174, 311, 328, 418, 602, 827
DrdI	GACNNNNNNGTC	1 cut(s)	659
DseDI	GACNNNNNNGTC	1 cut(s)	659
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	730
Eco147I	AGGCCT	1 cut(s)	804
Eco47I	GGWCC	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	623
EcoT22I	ATGCAT	1 cut(s)	570
FaeI	CATG	6 cut(s)	379, 410, 502, 635, 849, 928
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	6 cut(s)	375, 406, 498, 631, 845, 924
FauI	CCCGC	3 cut(s)	7, 557, 739
FblI	GTMKAC	3 cut(s)	349, 522, 960
Fnu4HI	GCNGC	6 cut(s)	32, 98, 457, 749, 997, 1053
FokI	GGATG	6 cut(s)	100, 239, 555, 727, 844, 897
Fsp4HI	GCNGC	6 cut(s)	32, 98, 457, 749, 997, 1053
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	6 cut(s)	32, 98, 457, 749, 997, 1053
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	6 cut(s)	169, 280, 302, 548, 804, 1048
HapII	CCGG	5 cut(s)	281, 764, 979, 1045, 1093
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	6 cut(s)	379, 410, 502, 635, 849, 928
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HinfI	GANTC	2 cut(s)	64, 718
HpaII	CCGG	5 cut(s)	281, 764, 979, 1045, 1093
Hpy166II	GTNNAC	7 cut(s)	57, 271, 350, 504, 523, 875, 961
Hpy188I	TCNGA	4 cut(s)	123, 451, 783, 913
Hpy188III	TCNNGA	3 cut(s)	85, 619, 864
Hpy8I	GTNNAC	7 cut(s)	57, 271, 350, 504, 523, 875, 961
HpyAV	CCTTC	2 cut(s)	4, 190
HpyCH4III	ACNGT	4 cut(s)	119, 609, 661, 872
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	8 cut(s)	106, 410, 459, 568, 635, 682, 687, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 103
HpyF3I	CTNAG	7 cut(s)	111, 153, 401, 705, 972, 1014, 1058
HpySE526I	ACGT	1 cut(s)	823
Hsp92II	CATG	6 cut(s)	379, 410, 502, 635, 849, 928
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	7 cut(s)	75, 174, 311, 328, 418, 602, 827
LmnI	GCTCC	1 cut(s)	1095
Lsp1109I	GCAGC	6 cut(s)	43, 84, 443, 760, 1008, 1039
LweI	GCATC	3 cut(s)	93, 577, 904
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	1 cut(s)	823
MalI	GATC	7 cut(s)	77, 176, 313, 330, 420, 604, 829
MboI	GATC	7 cut(s)	75, 174, 311, 328, 418, 602, 827
MboII	GAAGA	1 cut(s)	55
MfeI	CAATTG	2 cut(s)	677, 754
MflI	RGATCY	2 cut(s)	75, 418
MhlI	GDGCHC	1 cut(s)	978
MluCI	AATT	6 cut(s)	148, 472, 677, 754, 905, 1037
MmeI	TCCRAC	2 cut(s)	101, 192
MnlI	CCTC	7 cut(s)	39, 236, 376, 432, 538, 802, 871
Mph1103I	ATGCAT	1 cut(s)	570
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	5 cut(s)	426, 933, 1068, 1089, 1105
MslI	CAYNNNNRTG	1 cut(s)	1015
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	5 cut(s)	281, 764, 979, 1045, 1093
MspR9I	CCNGG	4 cut(s)	282, 625, 764, 1045
MunI	CAATTG	2 cut(s)	677, 754
Mva1269I	GAATGC	2 cut(s)	204, 459
MvaI	CCWGG	1 cut(s)	625
MwoI	GCNNNNNNNGC	2 cut(s)	28, 103
NciI	CCSGG	3 cut(s)	282, 764, 1045
NdeII	GATC	7 cut(s)	75, 174, 311, 328, 418, 602, 827
NlaIII	CATG	6 cut(s)	379, 410, 502, 635, 849, 928
NlaIV	GGNNCC	3 cut(s)	18, 420, 890
NsiI	ATGCAT	1 cut(s)	570
NspI	RCATGY	2 cut(s)	410, 635
PaeI	GCATGC	1 cut(s)	635
PceI	AGGCCT	1 cut(s)	804
PctI	GAATGC	2 cut(s)	204, 459
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	64, 718
PfoI	TCCNGGA	1 cut(s)	762
PkrI	GCNGC	6 cut(s)	33, 99, 458, 750, 998, 1054
Ppu21I	YACGTR	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	623
PspN4I	GGNNCC	3 cut(s)	18, 420, 890
PspPI	GGNCC	3 cut(s)	17, 168, 547
PsrI	GAACNNNNNNTAC	2 cut(s)	381, 413
PsuI	RGATCY	2 cut(s)	75, 418
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	1015
SaqAI	TTAA	5 cut(s)	426, 933, 1068, 1089, 1105
SatI	GCNGC	6 cut(s)	32, 98, 457, 749, 997, 1053
Sau3AI	GATC	7 cut(s)	75, 174, 311, 328, 418, 602, 827
Sau96I	GGNCC	3 cut(s)	17, 168, 547
ScrFI	CCNGG	4 cut(s)	282, 625, 764, 1045
SduI	GDGCHC	1 cut(s)	978
SfaNI	GCATC	3 cut(s)	93, 577, 904
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	1015
SmlI	CTYRAG	2 cut(s)	274, 806
SmoI	CTYRAG	2 cut(s)	274, 806
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	6 cut(s)	148, 472, 677, 754, 905, 1037
SseBI	AGGCCT	1 cut(s)	804
SsiI	CCGC	6 cut(s)	7, 14, 20, 550, 715, 732
SspMI	CTAG	1 cut(s)	864
StuI	AGGCCT	1 cut(s)	804
StyD4I	CCNGG	4 cut(s)	280, 623, 762, 1043
TaaI	ACNGT	4 cut(s)	119, 609, 661, 872
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	2 cut(s)	260, 1033
TasI	AATT	6 cut(s)	148, 472, 677, 754, 905, 1037
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	64, 718
Tru1I	TTAA	5 cut(s)	426, 933, 1068, 1089, 1105
Tru9I	TTAA	5 cut(s)	426, 933, 1068, 1089, 1105
TscAI	CASTG	3 cut(s)	614, 1022, 1086
TseI	GCWGC	6 cut(s)	31, 97, 456, 748, 996, 1052
TspDTI	ATGAA	3 cut(s)	17, 143, 178
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	3 cut(s)	614, 1022, 1086
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	3 cut(s)	148, 905, 1037
XbaI	TCTAGA	1 cut(s)	863
XceI	RCATGY	2 cut(s)	410, 635
XmiI	GTMKAC	3 cut(s)	349, 522, 960
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	864
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.