Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010388.1

Orthogroup ID

OG0002928

Physical Location & Seq

Genomic Coordinates Reverse (-)

1948 .. 6608

Gene Structure 4661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010388.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgaagcgaaagccacagttcaaatggaagcggaagcttttcgcttcgattttgatgtgcttgtgctttgggaccttggtccttcttatgcatactcactacactcggattatgactctggcctcaattcgtcctcagttgacaatccaacgccccaagattgccttcttgttcatcgcccgcaaccggttaccgttggatatgctctgggatgttttctttcagggcggggagggtaagttttcgatttatgtgcattccaggcccgggtttctgttcaataaggtcaccaccagatcagtttttttcctgaatcgtcaagtcaatgatagcatacaggtagattggggagaagcaaccatgattgaagcggagcgtatattgctcaaacatgcactagaggatcctcttaatcaacgctttgcttttgtttctgatagcagctttgctgatacaaaagatggccgctacaatccaaaaatggatcctgttattcctgtacaaaactggagaaaaggatctcagtgggttgtattgacgaggaagcattcagaggttgtagtgaaagacgatacagtgtttcctatgtttcagttgtattgtaagaggaagtcgttacctgagttttggcgggatcatcctgttccggccgataactccaaggagcacaattgcattccagacgagcattatgttcagacattactggctcaagaaggccttgaaggagaaatcacacgaagatcactgacacactcatcatgggatttatcatccactgcagaccgtgaacgccgtggatggcaccctatgacatacaaatattcagatgctactcccatgcttattaaatctataaaggatgtagataatatctactatgagaccgagtatcgaagagaatggtgtagcagcaaggagaaaccctctccatgctttctttttgccagaaaatttacccggcctgctgctctcaggcttctcaacacgactacactggagcttagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

336

Amino Acids

39.61

Weight (kDa)

9.53

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14550 AT5G14550 AT5G14550 AT5G14550
fragaria_vesca	FvH4_6g51390 FvH4_6g51390
malus_domestica	MD09G1028600.v1.1 MD17G1030200.v1.1
prunus_persica	Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1
pyrus_communis	pycom111g02270 pycom17g02760
rosa_chinensis	RchiOBHm_Chr2g0105161 RchiOBHm_Chr2g0107551 RchiOBHm_Chr2g0129161 RchiOBHm_Chr2g0173071 RchiOBHm_Chr3g0491531
rosa_laevigata	RLG00000014988 RLG00000022155
rosa_multiflora	Rmu_sc0008633.1_g000003 Rmu_sc0010388.1_g000002 Rmu_sc0011236.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079270 Rroxscaffold_7G00191080
rosa_rugosa	Rorug02G0564900 Rorug02G0565000
rosa_samantha	Rh2AG644800 Rh2BG655600 Rh2CG199900 Rh2CG620700 Rh2DG668900 Rh3AG299000 Rh4AG023800 Rh5AG168600 Rh5AG303700 Rh7AG291800
rosa_wichuraiana	Rw2G052960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	804
AciI	CCGC	6 cut(s)	31, 181, 228, 371, 466, 631
AclWI	GGATC	6 cut(s)	398, 411, 479, 492, 526, 642
AcoI	YGGCCR	2 cut(s)	463, 648
AcsI	RAATTY	1 cut(s)	953
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	186, 267
AgeI	ACCGGT	1 cut(s)	186
AgsI	TTSAA	4 cut(s)	22, 280, 368, 725
AjnI	CCWGG	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	3 cut(s)	37, 444, 1003
AluI	AGCT	3 cut(s)	37, 444, 1003
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	1 cut(s)	878
AlwI	GGATC	6 cut(s)	398, 411, 479, 492, 526, 642
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	6 cut(s)	120, 263, 463, 648, 718, 962
ApeKI	GCWGC	3 cut(s)	441, 912, 968
ApoI	RAATTY	1 cut(s)	953
AsiGI	ACCGGT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	38
AspS9I	GGNCC	3 cut(s)	72, 79, 264
AsuC2I	CCSGG	3 cut(s)	267, 268, 961
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	72, 79
BamHI	GGATCC	2 cut(s)	403, 484
BanI	GGYRCC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	3 cut(s)	453, 924, 955
BccI	CCATC	2 cut(s)	455, 795
BceAI	ACGGC	1 cut(s)	780
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	3 cut(s)	267, 268, 961
BcoDI	GTCTC	1 cut(s)	878
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	780
BisI	GCNGC	4 cut(s)	442, 466, 913, 969
BlsI	GCNGC	4 cut(s)	443, 467, 914, 970
Bme1390I	CCNGG	4 cut(s)	262, 267, 268, 961
Bme18I	GGWCC	2 cut(s)	72, 79
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	72, 79, 264
BmiI	GGNNCC	4 cut(s)	73, 405, 486, 806
BmrFI	CCNGG	4 cut(s)	262, 267, 268, 961
BmsI	GCATC	1 cut(s)	820
BoxI	GACNNNNGTC	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
BpmI	CTGGAG	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	696
BpuMI	CCSGG	3 cut(s)	267, 268, 961
BsaI	GGTCTC	1 cut(s)	878
BsaJI	CCNNGG	4 cut(s)	75, 266, 660, 796
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 267
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	3 cut(s)	512, 711, 1002
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	4 cut(s)	75, 266, 660, 796
BseGI	GGATG	5 cut(s)	217, 637, 773, 806, 868
BseLI	CCNNNNNNNGG	2 cut(s)	186, 267
BseMII	CTCAG	4 cut(s)	149, 536, 612, 988
BseNI	ACTGG	3 cut(s)	512, 711, 1002
BseX3I	CGGCCG	1 cut(s)	648
BseXI	GCAGC	3 cut(s)	453, 924, 955
Bsh1285I	CGRYCG	1 cut(s)	651
BshFI	GGCC	6 cut(s)	122, 265, 465, 650, 720, 964
BshNI	GGYRCC	1 cut(s)	804
BshTI	ACCGGT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	651
BsiHKAI	GWGCWC	1 cut(s)	669
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	4 cut(s)	187, 267, 647, 961
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	186, 267
BsmAI	GTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	3 cut(s)	256, 547, 675
BsnI	GGCC	6 cut(s)	122, 265, 465, 650, 720, 964
Bso31I	GGTCTC	1 cut(s)	878
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	6 cut(s)	296, 403, 484, 518, 634, 743
BspACI	CCGC	6 cut(s)	31, 181, 228, 371, 466, 631
BspANI	GGCC	6 cut(s)	122, 265, 465, 650, 720, 964
BspCNI	CTCAG	4 cut(s)	148, 535, 613, 987
BspLI	GGNNCC	4 cut(s)	73, 405, 486, 806
BspMAI	CTGCAG	1 cut(s)	784
BspPI	GGATC	6 cut(s)	398, 411, 479, 492, 526, 642
BspT107I	GGYRCC	1 cut(s)	804
BspTNI	GGTCTC	1 cut(s)	878
BsrFI	RCCGGY	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	3 cut(s)	512, 711, 1002
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	4 cut(s)	75, 266, 660, 796
BssMI	GATC	6 cut(s)	296, 403, 484, 518, 634, 743
BssT1I	CCWWGG	2 cut(s)	75, 660
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	4 cut(s)	18, 195, 577, 788
Bst6I	CTCTTC	1 cut(s)	892
BstAUI	TGTACA	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	181, 966
BstDEI	CTNAG	5 cut(s)	135, 522, 621, 974, 1004
BstDSI	CCRYGG	1 cut(s)	796
BstEII	GGTNACC	2 cut(s)	189, 286
BstF5I	GGATG	5 cut(s)	217, 637, 773, 806, 868
BstKTI	GATC	6 cut(s)	299, 406, 487, 521, 637, 746
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	6 cut(s)	296, 403, 484, 518, 634, 743
BstMCI	CGRYCG	1 cut(s)	651
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 382
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	395
BstPAI	GACNNNNGTC	1 cut(s)	77
BstPI	GGTNACC	2 cut(s)	189, 286
BstSCI	CCNGG	4 cut(s)	260, 265, 266, 959
BstSFI	CTRYAG	1 cut(s)	780
BstV1I	GCAGC	3 cut(s)	453, 924, 955
BstX2I	RGATCY	3 cut(s)	403, 484, 518
BstYI	RGATCY	3 cut(s)	403, 484, 518
BstZI	CGGCCG	1 cut(s)	648
BsuRI	GGCC	6 cut(s)	122, 265, 465, 650, 720, 964
BtgI	CCRYGG	1 cut(s)	796
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	5 cut(s)	217, 637, 773, 806, 868
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	5 cut(s)	530, 582, 746, 777, 995
Cac8I	GCNNGC	2 cut(s)	181, 966
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	72, 79, 264
Cfr9I	CCCGGG	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	500
CspAI	ACCGGT	1 cut(s)	186
CviAII	CATG	5 cut(s)	361, 392, 762, 841, 933
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	5 cut(s)	135, 522, 621, 974, 1004
DpnI	GATC	6 cut(s)	298, 405, 486, 520, 636, 745
DpnII	GATC	6 cut(s)	296, 403, 484, 518, 634, 743
EaeI	YGGCCR	2 cut(s)	463, 648
EagI	CGGCCG	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	892
EarI	CTCTTC	1 cut(s)	892
EclXI	CGGCCG	1 cut(s)	648
Eco130I	CCWWGG	2 cut(s)	75, 660
Eco147I	AGGCCT	1 cut(s)	720
Eco31I	GGTCTC	1 cut(s)	878
Eco47I	GGWCC	2 cut(s)	72, 79
Eco52I	CGGCCG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	266
Eco91I	GGTNACC	2 cut(s)	189, 286
EcoO109I	RGGNCCY	1 cut(s)	72
EcoO65I	GGTNACC	2 cut(s)	189, 286
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	2 cut(s)	75, 660
EcoT22I	ATGCAT	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	75, 660
FaeI	CATG	5 cut(s)	364, 395, 765, 844, 936
FalI	AAGNNNNNCTT	4 cut(s)	149, 181, 705, 737
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	5 cut(s)	360, 391, 761, 840, 932
FauI	CCCGC	3 cut(s)	188, 221, 624
Fnu4HI	GCNGC	4 cut(s)	442, 466, 913, 969
FokI	GGATG	5 cut(s)	224, 624, 760, 813, 875
Fsp4HI	GCNGC	4 cut(s)	442, 466, 913, 969
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	4 cut(s)	442, 466, 913, 969
GsuI	CTGGAG	1 cut(s)	529
HaeIII	GGCC	6 cut(s)	122, 265, 465, 650, 720, 964
HapII	CCGG	4 cut(s)	187, 267, 647, 961
Hin1II	CATG	5 cut(s)	364, 395, 765, 844, 936
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	2 cut(s)	115, 313
HpaII	CCGG	4 cut(s)	187, 267, 647, 961
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	141, 791
Hpy188I	TCNGA	5 cut(s)	108, 436, 553, 699, 829
Hpy188III	TCNNGA	3 cut(s)	310, 680, 713
Hpy8I	GTNNAC	2 cut(s)	141, 791
HpyAV	CCTTC	4 cut(s)	92, 175, 710, 719
HpyCH4III	ACNGT	4 cut(s)	18, 195, 577, 788
HpyCH4V	TGCA	5 cut(s)	91, 256, 395, 675, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 382
HpyF3I	CTNAG	5 cut(s)	135, 522, 621, 974, 1004
Hsp92II	CATG	5 cut(s)	364, 395, 765, 844, 936
Kzo9I	GATC	6 cut(s)	296, 403, 484, 518, 634, 743
LmnI	GCTCC	3 cut(s)	373, 664, 1000
Lsp1109I	GCAGC	3 cut(s)	453, 924, 955
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	3 cut(s)	189, 286, 615
MalI	GATC	6 cut(s)	298, 405, 486, 520, 636, 745
MboI	GATC	6 cut(s)	296, 403, 484, 518, 634, 743
MboII	GAAGA	2 cut(s)	753, 909
MfeI	CAATTG	1 cut(s)	670
MflI	RGATCY	3 cut(s)	403, 484, 518
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	3 cut(s)	126, 670, 953
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	2 cut(s)	172, 177
MnlI	CCTC	9 cut(s)	133, 144, 226, 394, 417, 534, 547, 600, 937
Mph1103I	ATGCAT	1 cut(s)	93
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	2 cut(s)	411, 849
MspI	CCGG	4 cut(s)	187, 267, 647, 961
MspR9I	CCNGG	4 cut(s)	262, 267, 268, 961
MunI	CAATTG	1 cut(s)	670
Mva1269I	GAATGC	3 cut(s)	256, 547, 675
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	262, 382
NciI	CCSGG	3 cut(s)	267, 268, 961
NdeII	GATC	6 cut(s)	296, 403, 484, 518, 634, 743
NlaIII	CATG	5 cut(s)	364, 395, 765, 844, 936
NlaIV	GGNNCC	4 cut(s)	73, 405, 486, 806
NmuCI	GTSAC	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	93
NspI	RCATGY	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	720
PctI	GAATGC	3 cut(s)	256, 547, 675
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	313
PinAI	ACCGGT	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	443, 467, 914, 970
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	72
PshAI	GACNNNNGTC	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	260
PspEI	GGTNACC	2 cut(s)	189, 286
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	4 cut(s)	73, 405, 486, 806
PspPI	GGNCC	3 cut(s)	72, 79, 264
PspPPI	RGGWCCY	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	784
PsuI	RGATCY	3 cut(s)	403, 484, 518
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	411, 849
SatI	GCNGC	4 cut(s)	442, 466, 913, 969
Sau3AI	GATC	6 cut(s)	296, 403, 484, 518, 634, 743
Sau96I	GGNCC	3 cut(s)	72, 79, 264
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	4 cut(s)	262, 267, 268, 961
SduI	GDGCHC	1 cut(s)	669
SetI	ASST	8 cut(s)	39, 77, 288, 342, 446, 558, 622, 1005
SfaNI	GCATC	1 cut(s)	820
SfcI	CTRYAG	1 cut(s)	780
SinI	GGWCC	2 cut(s)	72, 79
SmaI	CCCGGG	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	3 cut(s)	126, 670, 953
SseBI	AGGCCT	1 cut(s)	720
SsiI	CCGC	6 cut(s)	31, 181, 228, 371, 466, 631
SspI	AATATT	1 cut(s)	824
SspMI	CTAG	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	720
StyD4I	CCNGG	4 cut(s)	260, 265, 266, 959
StyI	CCWWGG	2 cut(s)	75, 660
TaaI	ACNGT	4 cut(s)	18, 195, 577, 788
TaqI	TCGA	3 cut(s)	47, 245, 895
TaqII	GACCGA	1 cut(s)	902
TasI	AATT	3 cut(s)	126, 670, 953
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	2 cut(s)	411, 849
Tru9I	TTAA	2 cut(s)	411, 849
TscAI	CASTG	5 cut(s)	530, 582, 753, 784, 1002
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	3 cut(s)	441, 912, 968
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	17, 163
TspMI	CCCGGG	1 cut(s)	266
TspRI	CASTG	5 cut(s)	530, 582, 753, 784, 1002
VpaK11BI	GGWCC	2 cut(s)	72, 79
XapI	RAATTY	1 cut(s)	953
XceI	RCATGY	1 cut(s)	395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XmaI	CCCGGG	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.