Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011236.1

Orthogroup ID

OG0002928

Physical Location & Seq

Genomic Coordinates Reverse (-)

28653 .. 31376

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011236.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggatcctgttattcctgtacaaaactggagaaaaggatctcagtgggttgtattgacgaggaagcatgcagaggttgtagtgaaagacgatacagtgtttcctatgtttcagttgtattgtaagaggaagtcgttacctgagttttggcgggatcatcctgttccggccgataactccaaggagcacaattgcattccagacgagcattatgttcagacattactggctcaagaaggccttgaaggagaaatcacacgaagatcactgacacactcatcatgggatttatcatccactgcagaccgtgaacgccgtggatggcaccctatgacatacaaatattcagatgctactcccatgcttattaaatctataaaggatgtagataatatctactatgagaccgagtatcgaagagaatggtgtagcagcaaggagaaaccctctccatgctttctttttgccagaaaatttacccggcctgctgctctcaggcttctcaacacgactacactggagcttagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

176

Amino Acids

20.83

Weight (kDa)

8.65

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14550 AT5G14550 AT5G14550 AT5G14550
fragaria_vesca	FvH4_6g51390 FvH4_6g51390
malus_domestica	MD09G1028600.v1.1 MD17G1030200.v1.1
prunus_persica	Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1
pyrus_communis	pycom111g02270 pycom17g02760
rosa_chinensis	RchiOBHm_Chr2g0105161 RchiOBHm_Chr2g0107551 RchiOBHm_Chr2g0129161 RchiOBHm_Chr2g0173071 RchiOBHm_Chr3g0491531
rosa_laevigata	RLG00000014988 RLG00000022155
rosa_multiflora	Rmu_sc0008633.1_g000003 Rmu_sc0010388.1_g000002 Rmu_sc0011236.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079270 Rroxscaffold_7G00191080
rosa_rugosa	Rorug02G0564900 Rorug02G0565000
rosa_samantha	Rh2AG644800 Rh2BG655600 Rh2CG199900 Rh2CG620700 Rh2DG668900 Rh3AG299000 Rh4AG023800 Rh5AG168600 Rh5AG303700 Rh7AG291800
rosa_wichuraiana	Rw2G052960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	324
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	3 cut(s)	12, 46, 162
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	473
AfaI	GTAC	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	1 cut(s)	523
AluI	AGCT	1 cut(s)	523
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	3 cut(s)	12, 46, 162
AoxI	GGCC	3 cut(s)	168, 238, 482
ApeKI	GCWGC	2 cut(s)	432, 488
ApoI	RAATTY	1 cut(s)	473
AsuC2I	CCSGG	1 cut(s)	481
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	444, 475
BccI	CCATC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	433, 489
BlsI	GCNGC	2 cut(s)	434, 490
Bme1390I	CCNGG	1 cut(s)	481
BmiI	GGNNCC	2 cut(s)	6, 326
BmrFI	CCNGG	1 cut(s)	481
BmsI	GCATC	1 cut(s)	340
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	481
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	180, 316
Bse1I	ACTGG	3 cut(s)	32, 231, 522
BseDI	CCNNGG	2 cut(s)	180, 316
BseGI	GGATG	4 cut(s)	157, 293, 326, 388
BseMII	CTCAG	3 cut(s)	56, 132, 508
BseNI	ACTGG	3 cut(s)	32, 231, 522
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	444, 475
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	170, 240, 484
BshNI	GGYRCC	1 cut(s)	324
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	167, 481
BsmAI	GTCTC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	3 cut(s)	170, 240, 484
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	4, 38, 154, 263
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	3 cut(s)	170, 240, 484
BspCNI	CTCAG	3 cut(s)	55, 133, 507
BspLI	GGNNCC	2 cut(s)	6, 326
BspMAI	CTGCAG	1 cut(s)	304
BspPI	GGATC	3 cut(s)	12, 46, 162
BspT107I	GGYRCC	1 cut(s)	324
BspTNI	GGTCTC	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	32, 231, 522
BssECI	CCNNGG	2 cut(s)	180, 316
BssMI	GATC	4 cut(s)	4, 38, 154, 263
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	97, 308
Bst6I	CTCTTC	1 cut(s)	412
BstAUI	TGTACA	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	69, 486
BstDEI	CTNAG	4 cut(s)	42, 141, 494, 524
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	4 cut(s)	157, 293, 326, 388
BstKTI	GATC	4 cut(s)	7, 41, 157, 266
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	4, 38, 154, 263
BstMCI	CGRYCG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	444, 475
BstX2I	RGATCY	2 cut(s)	4, 38
BstYI	RGATCY	2 cut(s)	4, 38
BstZI	CGGCCG	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	170, 240, 484
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	157, 293, 326, 388
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	5 cut(s)	50, 102, 266, 297, 515
Cac8I	GCNNGC	2 cut(s)	69, 486
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	4 cut(s)	68, 282, 361, 453
CviJI	RGCY	6 cut(s)	170, 230, 240, 484, 499, 523
CviKI_1	RGCY	6 cut(s)	170, 230, 240, 484, 499, 523
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	4 cut(s)	42, 141, 494, 524
DpnI	GATC	4 cut(s)	6, 40, 156, 265
DpnII	GATC	4 cut(s)	4, 38, 154, 263
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	398
Eco52I	CGGCCG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	4 cut(s)	71, 285, 364, 456
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	4 cut(s)	67, 281, 360, 452
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	433, 489
FokI	GGATG	4 cut(s)	144, 280, 333, 395
Fsp4HI	GCNGC	2 cut(s)	433, 489
GluI	GCNGC	2 cut(s)	433, 489
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	170, 240, 484
HapII	CCGG	2 cut(s)	167, 481
Hin1II	CATG	4 cut(s)	71, 285, 364, 456
HpaII	CCGG	2 cut(s)	167, 481
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	2 cut(s)	219, 349
Hpy188III	TCNNGA	2 cut(s)	200, 233
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	230, 239
HpyCH4III	ACNGT	2 cut(s)	97, 308
HpyCH4V	TGCA	3 cut(s)	71, 195, 302
HpyF3I	CTNAG	4 cut(s)	42, 141, 494, 524
Hsp92II	CATG	4 cut(s)	71, 285, 364, 456
Kzo9I	GATC	4 cut(s)	4, 38, 154, 263
LmnI	GCTCC	2 cut(s)	184, 520
Lsp1109I	GCAGC	2 cut(s)	444, 475
LweI	GCATC	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	4 cut(s)	6, 40, 156, 265
MboI	GATC	4 cut(s)	4, 38, 154, 263
MboII	GAAGA	2 cut(s)	273, 429
MfeI	CAATTG	1 cut(s)	190
MflI	RGATCY	2 cut(s)	4, 38
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	2 cut(s)	190, 473
MnlI	CCTC	4 cut(s)	54, 67, 120, 457
MseI	TTAA	1 cut(s)	369
MspI	CCGG	2 cut(s)	167, 481
MspR9I	CCNGG	1 cut(s)	481
MunI	CAATTG	1 cut(s)	190
Mva1269I	GAATGC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	481
NdeII	GATC	4 cut(s)	4, 38, 154, 263
NlaIII	CATG	4 cut(s)	71, 285, 364, 456
NlaIV	GGNNCC	2 cut(s)	6, 326
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	240
PctI	GAATGC	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	434, 490
PspN4I	GGNNCC	2 cut(s)	6, 326
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	4, 38
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	433, 489
Sau3AI	GATC	4 cut(s)	4, 38, 154, 263
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	3 cut(s)	78, 142, 525
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	2 cut(s)	190, 473
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	1 cut(s)	151
SspI	AATATT	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	97, 308
TaqI	TCGA	1 cut(s)	415
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	2 cut(s)	190, 473
TatI	WGTACW	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	5 cut(s)	50, 102, 273, 304, 522
TseI	GCWGC	2 cut(s)	432, 488
TspRI	CASTG	5 cut(s)	50, 102, 273, 304, 522
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.