Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008633.1

Orthogroup ID

OG0002928

Physical Location & Seq

Genomic Coordinates Reverse (-)

25749 .. 26819

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008633.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atggatcctgttattcctgtacaaaactggagaaaaggatctcagtgggttgtattgacgaggaagcatgcagaggttgtagtgaaagacgatacagtgtttcctatgtttcagttgtattgtaagaggaagtcgttacctgagttttggcgggatcatcctgttccggccgataactccaaggagcacaattgcattccagacgagcattatgttcagacattactggctgtaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

79

Amino Acids

9.37

Weight (kDa)

7.84

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14550 AT5G14550 AT5G14550 AT5G14550
fragaria_vesca	FvH4_6g51390 FvH4_6g51390
malus_domestica	MD09G1028600.v1.1 MD17G1030200.v1.1
prunus_persica	Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1
pyrus_communis	pycom111g02270 pycom17g02760
rosa_chinensis	RchiOBHm_Chr2g0105161 RchiOBHm_Chr2g0107551 RchiOBHm_Chr2g0129161 RchiOBHm_Chr2g0173071 RchiOBHm_Chr3g0491531
rosa_laevigata	RLG00000014988 RLG00000022155
rosa_multiflora	Rmu_sc0008633.1_g000003 Rmu_sc0010388.1_g000002 Rmu_sc0011236.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079270 Rroxscaffold_7G00191080
rosa_rugosa	Rorug02G0564900 Rorug02G0565000
rosa_samantha	Rh2AG644800 Rh2BG655600 Rh2CG199900 Rh2CG620700 Rh2DG668900 Rh3AG299000 Rh4AG023800 Rh5AG168600 Rh5AG303700 Rh7AG291800
rosa_wichuraiana	Rw2G052960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	3 cut(s)	12, 46, 162
AcoI	YGGCCR	1 cut(s)	168
AfaI	GTAC	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	3 cut(s)	12, 46, 162
AoxI	GGCC	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	6
BpmI	CTGGAG	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	180
Bse1I	ACTGG	2 cut(s)	32, 231
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	56, 132
BseNI	ACTGG	2 cut(s)	32, 231
BseX3I	CGGCCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	4, 38, 154
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	55, 133
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	12, 46, 162
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	32, 231
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	4, 38, 154
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	97
BstAUI	TGTACA	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	42, 141
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	3 cut(s)	7, 41, 157
BstMBI	GATC	3 cut(s)	4, 38, 154
BstMCI	CGRYCG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	71
BstX2I	RGATCY	2 cut(s)	4, 38
BstYI	RGATCY	2 cut(s)	4, 38
BstZI	CGGCCG	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	50, 102
Cac8I	GCNNGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	2 cut(s)	170, 230
CviKI_1	RGCY	2 cut(s)	170, 230
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	42, 141
DpnI	GATC	3 cut(s)	6, 40, 156
DpnII	GATC	3 cut(s)	4, 38, 154
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	180
Eco52I	CGGCCG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	71
FaiI	YATR	3 cut(s)	69, 107, 213
FatI	CATG	1 cut(s)	67
FauI	CCCGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	1 cut(s)	71
HpaII	CCGG	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	71, 195
HpyF3I	CTNAG	2 cut(s)	42, 141
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	4, 38, 154
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	8 cut(s)	13, 21, 30, 153, 174, 180, 212, 213
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	3 cut(s)	6, 40, 156
MboI	GATC	3 cut(s)	4, 38, 154
MfeI	CAATTG	1 cut(s)	190
MflI	RGATCY	2 cut(s)	4, 38
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	190
MnlI	CCTC	3 cut(s)	54, 67, 120
MspI	CCGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	190
Mva1269I	GAATGC	1 cut(s)	195
NdeII	GATC	3 cut(s)	4, 38, 154
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PctI	GAATGC	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	4, 38
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	4, 38, 154
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	2 cut(s)	78, 142
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	97
TasI	AATT	1 cut(s)	190
TatI	WGTACW	1 cut(s)	19
TscAI	CASTG	2 cut(s)	50, 102
TspRI	CASTG	2 cut(s)	50, 102
XceI	RCATGY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.