Rh2CG199900

Core-2/I-Branching enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002928
Physical Location & Seq
Reverse (-)
19134438 .. 19136713
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG199900.1

Sequence Viewer

Length: 267 bp
ATGTCAACCAGAACCAGTTTTGTAGACAGCTTTGCTGATACAAAAGATGGCCGCTACAATCCAAAAATGGATCCTGTTATTCCTGTACAAAACTGGAGAAAAGGATCTCAGTGGGTTGTATTGACGAGGAAGCATGCAGAGGTTGTAGTGAAAGTCGATACAGTGTTTCCTATGTTTCAGTTGTATTGTAAGAGGAAGTCGTTACCTGAGTTTTGGCGGGATCATCCTGTTGTAAGTACTTTTCTTTATTTTTTTTTTAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

88

Amino Acids

10.51

Weight (kDa)

9.66

Isoelectric Point (pI)

26.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 3 - 72 2.8e-15 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AciI CCGC 2 cut(s) 52, 217
AclWI GGATC 4 cut(s) 65, 78, 112, 228
AcoI YGGCCR 1 cut(s) 49
AfaI GTAC 2 cut(s) 87, 238
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
AlwI GGATC 4 cut(s) 65, 78, 112, 228
AoxI GGCC 1 cut(s) 49
BamHI GGATCC 1 cut(s) 70
BccI CCATC 1 cut(s) 41
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
BmcAI AGTACT 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 15, 98
BseGI GGATG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 122, 198
BseNI ACTGG 2 cut(s) 15, 98
BshFI GGCC 1 cut(s) 51
BsnI GGCC 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 85
Bsp143I GATC 3 cut(s) 70, 104, 220
BspACI CCGC 2 cut(s) 52, 217
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 2 cut(s) 121, 199
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 4 cut(s) 65, 78, 112, 228
BsrGI TGTACA 1 cut(s) 85
BsrI ACTGG 2 cut(s) 15, 98
BssMI GATC 3 cut(s) 70, 104, 220
Bst4CI ACNGT 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 108, 207
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 3 cut(s) 73, 107, 223
BstMBI GATC 3 cut(s) 70, 104, 220
BstNSI RCATGY 1 cut(s) 137
BstX2I RGATCY 2 cut(s) 70, 104
BstYI RGATCY 2 cut(s) 70, 104
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 2 cut(s) 116, 168
Cac8I GCNNGC 1 cut(s) 135
Csp6I GTAC 2 cut(s) 86, 237
CviAII CATG 1 cut(s) 134
CviJI RGCY 2 cut(s) 30, 51
CviKI_1 RGCY 2 cut(s) 30, 51
CviQI GTAC 2 cut(s) 86, 237
DdeI CTNAG 2 cut(s) 108, 207
DpnI GATC 3 cut(s) 72, 106, 222
DpnII GATC 3 cut(s) 70, 104, 220
EaeI YGGCCR 1 cut(s) 49
FaeI CATG 1 cut(s) 137
FaiI YATR 2 cut(s) 135, 173
FatI CATG 1 cut(s) 133
FauI CCCGC 1 cut(s) 210
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 115
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 1 cut(s) 137
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 6, 25
Hpy8I GTNNAC 2 cut(s) 6, 25
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 108, 207
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 3 cut(s) 70, 104, 220
LpnPI CCDG 7 cut(s) 22, 28, 79, 87, 96, 219, 240
MaeIII GTNAC 1 cut(s) 201
MalI GATC 3 cut(s) 72, 106, 222
MboI GATC 3 cut(s) 70, 104, 220
MflI RGATCY 2 cut(s) 70, 104
MluCI AATT 1 cut(s) 259
MnlI CCTC 3 cut(s) 120, 133, 186
MseI TTAA 1 cut(s) 258
NdeII GATC 3 cut(s) 70, 104, 220
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 72
NspI RCATGY 1 cut(s) 137
PaeI GCATGC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 72
PsuI RGATCY 2 cut(s) 70, 104
RsaI GTAC 2 cut(s) 87, 238
RsaNI GTAC 2 cut(s) 86, 237
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 3 cut(s) 70, 104, 220
ScaI AGTACT 1 cut(s) 238
SetI ASST 3 cut(s) 32, 144, 208
SphI GCATGC 1 cut(s) 137
Sse9I AATT 1 cut(s) 259
SsiI CCGC 2 cut(s) 52, 217
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 259
TatI WGTACW 2 cut(s) 85, 236
TauI GCSGC 1 cut(s) 54
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 2 cut(s) 116, 168
TspRI CASTG 2 cut(s) 116, 168
XceI RCATGY 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.