Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004333

Physical Location & Seq

Genomic Coordinates Reverse (-)

453806 .. 456413

Gene Structure 2608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G003300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATTGTGCGAATCATTCTTTCTATCATGCTATTGTCAATGGTGACTCCCTACTTTTGTGTAAAGGAACAACTCAAGAATTATTCTGAATTTCAACAATTTATGATAGTTGTTGTGACTTGCTCTGTGTGGATCCTCAAAAGAGAGGCATACTTGTACAATAAGCCTGAAAAGGAGGGTTTTTTAGCAGCCATGGGGGCTATTTGGTCCTCCGATACAAGTCCTGACTCGCTATCATCGGACTCAACGATTCCCACTGATTCTCATGAGGCAGACTCACCACCAGTTTCATCAAATCCCAACTTGTCCCATTCAGATTCTAAAACCCCAGAAGACCAAACTCCAAAACATACTGTAGATCACCAATTGGATACCAAAACTCTAGAAGAAGAGAAGCATCAGGAAGATGAAGGCGCATTGGAAAAAGAAGAAGAGCAAGAGGAGGGAGAATGTGGCTTTTGCTTGTTCATGAAAGCTGGTGGGTGCAGGGAGAGTTTCATAGCTTGGGAAAAGTGTGCAGCAGAGTCTGAGATGAACGAGGAGGATGTTGCTGAAAAGTGCTTTGAGGTCACCGCGGCCTTGAAGAAGTGTATGCAGGCTCATCCAGATCACTATGCGCCCATATCGAGGCTTGAGAAAGCAGCTGAGGAGGAGACAGTTAAAGACAGTTTGGAAGAAGAAAAGGCTTTAAAGAGCTCGGAGCAAAATGCCACTTTGATCCATTCGAACCAGCATGGGAATCCTAGTGAAAAGCGAGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCK

Protein Analysis

255

Amino Acids

28.59

Weight (kDa)

4.67

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14048 AT1G14060
fragaria_vesca	FvH4_5g26420 FvH4_7g07760
malus_domestica	MD04G1004200.v1.1 MD06G1002200.v1.1
prunus_persica	Prupe.1G004000_v2.0.a1 Prupe.5G003300_v2.0.a1
pyrus_communis	pycom04g00420 pycom06g00230
rosa_chinensis	RchiOBHm_Chr1g0342011 RchiOBHm_Chr7g0217291
rosa_laevigata	RLG00000002498 RLG00000029137
rosa_multiflora	Rmu_co8386161.1_g000001 Rmu_sc0002161.1_g000004 Rmu_sc0013923.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242470 Rroxscaffold_4G00312730
rosa_rugosa	Rorug07G0167300 Rorug07G0167400 Rorug07G0167500 Rorug07G0167600 Rorug07G0167700
rosa_samantha	Rh1AG168000 Rh1BG134700 Rh1DG168800 Rh7AG306900 Rh7BG297900 Rh7CG326000 Rh7DG306600
rosa_wichuraiana	Rw7G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	575
AciI	CCGC	2 cut(s)	573, 575
AclWI	GGATC	3 cut(s)	127, 140, 712
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	627
AgsI	TTSAA	2 cut(s)	95, 583
AluBI	AGCT	4 cut(s)	476, 503, 644, 696
AluI	AGCT	4 cut(s)	476, 503, 644, 696
Alw21I	GWGCWC	1 cut(s)	698
Alw26I	GTCTC	2 cut(s)	647, 750
AlwI	GGATC	3 cut(s)	127, 140, 712
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	3 cut(s)	188, 518, 641
ApoI	RAATTY	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	416, 619
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	4 cut(s)	55, 270, 353, 562
AsuII	TTCGAA	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	698
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	200, 530, 653
BciVI	GTATCC	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	647, 750
BfaI	CTAG	2 cut(s)	383, 744
BfmI	CTRYAG	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	4 cut(s)	189, 519, 576, 642
BlsI	GCNGC	4 cut(s)	190, 520, 577, 643
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	725
BpuEI	CTTGAG	2 cut(s)	59, 653
BsaJI	CCNNGG	2 cut(s)	192, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse1I	ACTGG	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	192, 573
BseGI	GGATG	2 cut(s)	550, 601
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	519, 636
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	4 cut(s)	455, 554, 662, 665
BseXI	GCAGC	3 cut(s)	200, 530, 653
BsgI	GTGCAG	2 cut(s)	505, 537
Bsh1236I	CGCG	1 cut(s)	575
BshFI	GGCC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	627
BsmAI	GTCTC	2 cut(s)	647, 750
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	578
Bsp119I	TTCGAA	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	4 cut(s)	132, 358, 607, 717
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	2 cut(s)	573, 575
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	2 cut(s)	520, 637
BspFNI	CGCG	1 cut(s)	575
BspHI	TCATGA	2 cut(s)	265, 468
BspLI	GGNNCC	1 cut(s)	134
BspPI	GGATC	3 cut(s)	127, 140, 712
BspQI	GCTCTTC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	725
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	192, 573
BssMI	GATC	4 cut(s)	132, 358, 607, 717
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	4 cut(s)	355, 658, 668, 761
Bst6I	CTCTTC	2 cut(s)	384, 426
BstAUI	TGTACA	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	2 cut(s)	528, 645
BstDSI	CCRYGG	2 cut(s)	192, 573
BstEII	GGTNACC	1 cut(s)	568
BstF5I	GGATG	2 cut(s)	550, 601
BstFNI	CGCG	1 cut(s)	575
BstHHI	GCGC	2 cut(s)	416, 619
BstKTI	GATC	4 cut(s)	135, 361, 610, 720
BstMAI	GTCTC	2 cut(s)	647, 750
BstMBI	GATC	4 cut(s)	132, 358, 607, 717
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstPI	GGTNACC	1 cut(s)	568
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	3 cut(s)	200, 530, 653
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	578
BtgI	CCRYGG	2 cut(s)	192, 573
BtsCI	GGATG	2 cut(s)	550, 601
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	597
CaiI	CAGNNNCTG	1 cut(s)	527
CciI	TCATGA	2 cut(s)	265, 468
CfoI	GCGC	2 cut(s)	416, 619
Cfr13I	GGNCC	1 cut(s)	207
Cfr42I	CCGCGG	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	5 cut(s)	28, 193, 266, 469, 734
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	528, 645
DpnI	GATC	4 cut(s)	134, 360, 609, 719
DpnII	GATC	4 cut(s)	132, 358, 607, 717
DraI	TTTAAA	1 cut(s)	690
Eam1104I	CTCTTC	2 cut(s)	384, 426
EarI	CTCTTC	2 cut(s)	384, 426
Ecl136II	GAGCTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	696
Eco91I	GGTNACC	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	696
EcoO65I	GGTNACC	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	698
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	5 cut(s)	31, 196, 269, 472, 737
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	5 cut(s)	27, 192, 265, 468, 733
Fnu4HI	GCNGC	4 cut(s)	189, 519, 576, 642
FokI	GGATG	2 cut(s)	557, 588
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	4 cut(s)	189, 519, 576, 642
FspBI	CTAG	2 cut(s)	383, 744
GlaI	GCGC	2 cut(s)	415, 618
GluI	GCNGC	4 cut(s)	189, 519, 576, 642
HaeIII	GGCC	1 cut(s)	578
HhaI	GCGC	2 cut(s)	416, 619
Hin1II	CATG	5 cut(s)	31, 196, 269, 472, 737
Hin6I	GCGC	2 cut(s)	414, 617
HinP1I	GCGC	2 cut(s)	414, 617
HphI	GGTGA	4 cut(s)	55, 270, 353, 562
Hpy188I	TCNGA	6 cut(s)	88, 214, 241, 316, 529, 700
Hpy188III	TCNNGA	7 cut(s)	76, 224, 266, 383, 401, 469, 605
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	4 cut(s)	355, 658, 668, 761
HpyCH4V	TGCA	3 cut(s)	486, 518, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	528, 645
Hsp92II	CATG	5 cut(s)	31, 196, 269, 472, 737
HspAI	GCGC	2 cut(s)	414, 617
KspI	CCGCGG	1 cut(s)	576
Kzo9I	GATC	4 cut(s)	132, 358, 607, 717
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	1 cut(s)	700
Lsp1109I	GCAGC	3 cut(s)	200, 530, 653
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	383, 744
MaeIII	GTNAC	3 cut(s)	43, 115, 568
MalI	GATC	4 cut(s)	134, 360, 609, 719
MboI	GATC	4 cut(s)	132, 358, 607, 717
MboII	GAAGA	9 cut(s)	344, 398, 401, 416, 440, 443, 595, 686, 689
MfeI	CAATTG	1 cut(s)	365
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	4 cut(s)	79, 89, 98, 365
MlyI	GAGTC	5 cut(s)	40, 221, 236, 269, 533
MseI	TTAA	3 cut(s)	660, 689, 763
MspA1I	CMGCKG	2 cut(s)	575, 644
MunI	CAATTG	1 cut(s)	365
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	4 cut(s)	132, 358, 607, 717
NlaIII	CATG	5 cut(s)	31, 196, 269, 472, 737
NlaIV	GGNNCC	1 cut(s)	134
NmuCI	GTSAC	3 cut(s)	43, 115, 568
NspV	TTCGAA	1 cut(s)	725
PagI	TCATGA	2 cut(s)	265, 468
PciSI	GCTCTTC	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PfeI	GAWTC	5 cut(s)	12, 250, 260, 317, 739
PkrI	GCNGC	4 cut(s)	190, 520, 577, 643
PleI	GAGTC	5 cut(s)	40, 221, 236, 269, 532
PpsI	GAGTC	5 cut(s)	40, 221, 236, 269, 532
Psp124BI	GAGCTC	1 cut(s)	698
PspEI	GGTNACC	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	698
SacII	CCGCGG	1 cut(s)	576
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	660, 689, 763
SatI	GCNGC	4 cut(s)	189, 519, 576, 642
Sau3AI	GATC	4 cut(s)	132, 358, 607, 717
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	5 cut(s)	40, 221, 236, 269, 533
SduI	GDGCHC	1 cut(s)	698
SetI	ASST	5 cut(s)	478, 505, 570, 646, 698
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	354
Sfr303I	CCGCGG	1 cut(s)	576
SfuI	TTCGAA	1 cut(s)	725
SgrBI	CCGCGG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	74, 632
SmoI	CTYRAG	2 cut(s)	74, 632
Sse9I	AATT	4 cut(s)	79, 89, 98, 365
SsiI	CCGC	2 cut(s)	573, 575
SspMI	CTAG	2 cut(s)	383, 744
SstI	GAGCTC	1 cut(s)	698
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	4 cut(s)	355, 658, 668, 761
TaqI	TCGA	2 cut(s)	626, 725
TasI	AATT	4 cut(s)	79, 89, 98, 365
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	578
TfiI	GAWTC	5 cut(s)	12, 250, 260, 317, 739
Tru1I	TTAA	3 cut(s)	660, 689, 763
Tru9I	TTAA	3 cut(s)	660, 689, 763
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	3 cut(s)	43, 115, 568
TseI	GCWGC	3 cut(s)	188, 518, 641
Tsp45I	GTSAC	3 cut(s)	43, 115, 568
TspDTI	ATGAA	6 cut(s)	279, 423, 457, 485, 487, 548
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	89
XbaI	TCTAGA	1 cut(s)	382
XspI	CTAG	2 cut(s)	383, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.