Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004333

Physical Location & Seq

Genomic Coordinates Forward (+)

32043433 .. 32044492

Gene Structure 1060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG168000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGTGCTTCCAACTCCATTGACAGAGCAGCACCAGACTCATCAGAGGCGTCTCCCCCACCAAAGACCGATTCAATTCCCTCCTCCGTCTCCATCTCCATGTCCGATTCGGCTTCCAAACCCCAATCGGAAGACCAACCCCCGCCGCAGCCCCAATCGGACACAAAACCCTCCGAAGAAGAAGCGGCGGCGGCGAAGCCCAAGGAAGGCGATGCAGTCCAATCGGAGGAGGAGGAGGAAGATGAGGAGAAGGGGGAGTGCGGGTTCTGTTTGTACATGAAAGGCGGCGGGTGCAAAGAGAGCTTTGTAGCTTGGGAAAACTGCATTGAAGAGGCGGAGAAGACGAACGAGGACATTGCTCAGAAGTGCTTCGACCTCACCTCCGCTCTCAGGACGTGTATGCTGGAACATTCCGATTACTACGAGCCCATTCTCAGGGCGGAGAAGGCCGCCGAGGAGGAAGCCATCAAGGAATTGGACAAGGAAAAGAAGGAAGAGAAGGAGAAGGAGAAGGAGGTGGTTATAGAATTGGAGAACGAAAAGGCTCCAGCTTCTAAGGTGGAGGAGAGTTCCGGTGGGAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCK

Protein Analysis

195

Amino Acids

21.31

Weight (kDa)

4.36

Isoelectric Point (pI)

81.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCK	PF07802	85 - 158	1.5e-34	GCK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14048 AT1G14060
fragaria_vesca	FvH4_5g26420 FvH4_7g07760
malus_domestica	MD04G1004200.v1.1 MD06G1002200.v1.1
prunus_persica	Prupe.1G004000_v2.0.a1 Prupe.5G003300_v2.0.a1
pyrus_communis	pycom04g00420 pycom06g00230
rosa_chinensis	RchiOBHm_Chr1g0342011 RchiOBHm_Chr7g0217291
rosa_laevigata	RLG00000002498 RLG00000029137
rosa_multiflora	Rmu_co8386161.1_g000001 Rmu_sc0002161.1_g000004 Rmu_sc0013923.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242470 Rroxscaffold_4G00312730
rosa_rugosa	Rorug07G0167300 Rorug07G0167400 Rorug07G0167500 Rorug07G0167600 Rorug07G0167700
rosa_samantha	Rh1AG168000 Rh1BG134700 Rh1DG168800 Rh7AG306900 Rh7BG297900 Rh7CG326000 Rh7DG306600
rosa_wichuraiana	Rw7G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	4 cut(s)	206, 226, 390, 435
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	75, 329
AjiI	CACGTC	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AloI	GAACNNNNNNTCC	2 cut(s)	248, 280
AluBI	AGCT	3 cut(s)	303, 311, 551
AluI	AGCT	3 cut(s)	303, 311, 551
Alw26I	GTCTC	2 cut(s)	57, 94
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	2 cut(s)	29, 148
Asp700I	GAANNNNTTC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	2 cut(s)	138, 347
BbvI	GCAGC	2 cut(s)	41, 160
BccI	CCATC	2 cut(s)	101, 473
BcgI	CGANNNNNNTGC	4 cut(s)	204, 238, 338, 372
BcoDI	GTCTC	2 cut(s)	57, 94
BisI	GCNGC	8 cut(s)	30, 146, 149, 186, 189, 192, 286, 450
BlsI	GCNGC	8 cut(s)	31, 147, 150, 187, 190, 193, 287, 451
BmgBI	CACGTC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	546
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	2 cut(s)	138, 347
BpmI	CTGGAG	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	201, 453
BsaWI	WCCGGW	1 cut(s)	572
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 365, 395
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 226, 390, 435
Bse3DI	GCAATG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	201, 453
BseLI	CCNNNNNNNGG	4 cut(s)	206, 226, 390, 435
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	374, 403, 448
BseRI	GAGGAG	7 cut(s)	73, 242, 245, 248, 260, 470, 578
BseXI	GCAGC	2 cut(s)	41, 160
BshFI	GGCC	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	573
BslI	CCNNNNNNNGG	4 cut(s)	206, 226, 390, 435
BsmAI	GTCTC	2 cut(s)	57, 94
BsmBI	CGTCTC	2 cut(s)	57, 94
BsnI	GGCC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp1407I	TGTACA	1 cut(s)	273
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	3 cut(s)	373, 402, 447
BspLI	GGNNCC	1 cut(s)	546
BsrBI	CCGCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	354
BsrGI	TGTACA	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	201, 453
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	201
Bst6I	CTCTTC	2 cut(s)	324, 489
BstACI	GRCGYC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	273
BstDEI	CTNAG	4 cut(s)	360, 389, 434, 555
BstMAI	GTCTC	2 cut(s)	57, 94
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 291, 300, 446
BstV1I	GCAGC	2 cut(s)	41, 160
BstV2I	GAAGAC	2 cut(s)	138, 347
BsuRI	GGCC	1 cut(s)	449
BtgZI	GCGATG	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	396
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	2 cut(s)	100, 277
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	360, 389, 434, 555
Eam1104I	CTCTTC	2 cut(s)	324, 489
EarI	CTCTTC	2 cut(s)	324, 489
EciI	GGCGGA	2 cut(s)	350, 455
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	2 cut(s)	57, 94
FaeI	CATG	2 cut(s)	103, 280
FaiI	YATR	4 cut(s)	101, 278, 401, 524
FatI	CATG	2 cut(s)	99, 276
FauI	CCCGC	3 cut(s)	150, 254, 281
Fnu4HI	GCNGC	8 cut(s)	30, 146, 149, 186, 189, 192, 286, 450
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	8 cut(s)	30, 146, 149, 186, 189, 192, 286, 450
GluI	GCNGC	8 cut(s)	30, 146, 149, 186, 189, 192, 286, 450
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	1 cut(s)	573
HgaI	GACGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	103, 280
HinfI	GANTC	3 cut(s)	38, 71, 107
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	8 cut(s)	46, 106, 130, 160, 175, 226, 363, 415
Hpy188III	TCNNGA	1 cut(s)	391
HpyAV	CCTTC	7 cut(s)	200, 244, 439, 484, 493, 499, 505
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	3 cut(s)	215, 294, 324
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 291, 300, 446
HpyF3I	CTNAG	4 cut(s)	360, 389, 434, 555
HpySE526I	ACGT	1 cut(s)	395
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	103, 280
LmnI	GCTCC	1 cut(s)	550
LpnPI	CCDG	5 cut(s)	48, 376, 389, 421, 561
Lsp1109I	GCAGC	2 cut(s)	41, 160
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	1 cut(s)	395
MbiI	CCGCTC	1 cut(s)	386
MboII	GAAGA	7 cut(s)	143, 188, 191, 251, 341, 352, 506
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	3 cut(s)	75, 473, 527
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	4 cut(s)	191, 291, 300, 446
NlaIII	CATG	2 cut(s)	103, 280
NlaIV	GGNNCC	1 cut(s)	546
NmeAIII	GCCGAG	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	71, 107
PkrI	GCNGC	8 cut(s)	31, 147, 150, 187, 190, 193, 287, 451
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	546
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	98
SatI	GCNGC	8 cut(s)	30, 146, 149, 186, 189, 192, 286, 450
SchI	GAGTC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	8 cut(s)	305, 313, 378, 383, 398, 519, 553, 561
SfaNI	GCATC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	75, 473, 527
StyI	CCWWGG	1 cut(s)	201
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	372
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	75, 473, 527
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	6 cut(s)	148, 188, 191, 194, 288, 452
TfiI	GAWTC	2 cut(s)	71, 107
TseI	GCWGC	2 cut(s)	29, 148
TspDTI	ATGAA	1 cut(s)	293
TspGWI	ACGGA	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.