Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004333

Physical Location & Seq

Genomic Coordinates Reverse (-)

33871319 .. 33872456

Gene Structure 1138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56867

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGTGCTTCCAACTCCATCGACAGACCAGCACCAGACTCATCAGAGGCGTCTCCCCCACCAAAGACCGATTCAATTCCCTCCTCCGTCTCCGTCTCCATGTCCGATTCGGCTTCCAAACCCCAATCGGAAGACCAACCTCCGCCGCAGCCCCAATCGGACACAAAACCCTCCGAAGAAGAAGCGGCGGCGGCGAAGCCCAAGGGAGACGATGCAGTCCAATCGGAGGAGGAGGAGGAGGAAGATGAGGAGGAGAAGGGGGAGTGCGGGTTCTGCTTGTACATGAAAGGCGGCGGGTGCAAAGAGAGCTTTGTAGCTTGGGAAAACTGCATTGAAGAGGCGGAGAAGACGAACGAGGACATTGCTCAGAAGTGCTTCGACCTCACCTCCGCTCTCAGGACGTGTATGCTGGAACATTCCGATTACTACGAGCCCATTCTCAGGGCGGAGAAGGCCGCCGAGGAGGAAGCCATCAAGGAATTGGACAAGGAAAAGAAGGAAGAGAAGGAGAAGGAGAAGGAGAAGGAGGTGGTTATAGAATTGGAGAACGAAAAGGCTCCAGCTTCTAAGGTGGAGGAGAGTTCCGGTGGGAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCK

Protein Analysis

199

Amino Acids

21.83

Weight (kDa)

4.34

Isoelectric Point (pI)

85.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCK	PF07802	87 - 160	1.6e-34	GCK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14048 AT1G14060
fragaria_vesca	FvH4_5g26420 FvH4_7g07760
malus_domestica	MD04G1004200.v1.1 MD06G1002200.v1.1
prunus_persica	Prupe.1G004000_v2.0.a1 Prupe.5G003300_v2.0.a1
pyrus_communis	pycom04g00420 pycom06g00230
rosa_chinensis	RchiOBHm_Chr1g0342011 RchiOBHm_Chr7g0217291
rosa_laevigata	RLG00000002498 RLG00000029137
rosa_multiflora	Rmu_co8386161.1_g000001 Rmu_sc0002161.1_g000004 Rmu_sc0013923.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242470 Rroxscaffold_4G00312730
rosa_rugosa	Rorug07G0167300 Rorug07G0167400 Rorug07G0167500 Rorug07G0167600 Rorug07G0167700
rosa_samantha	Rh1AG168000 Rh1BG134700 Rh1DG168800 Rh7AG306900 Rh7BG297900 Rh7CG326000 Rh7DG306600
rosa_wichuraiana	Rw7G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	226, 396, 441
AflIII	ACRYGT	1 cut(s)	401
AgsI	TTSAA	2 cut(s)	75, 335
AjiI	CACGTC	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	3 cut(s)	309, 317, 563
AluI	AGCT	3 cut(s)	309, 317, 563
Alw26I	GTCTC	4 cut(s)	57, 94, 100, 201
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	2 cut(s)	138, 353
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	26, 479
BcgI	CGANNNNNNTGC	4 cut(s)	204, 238, 344, 378
BcoDI	GTCTC	4 cut(s)	57, 94, 100, 201
BisI	GCNGC	7 cut(s)	146, 149, 186, 189, 192, 292, 456
BlsI	GCNGC	7 cut(s)	147, 150, 187, 190, 193, 293, 457
BmgBI	CACGTC	1 cut(s)	402
BmiI	GGNNCC	1 cut(s)	558
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	2 cut(s)	138, 353
BpmI	CTGGAG	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	201, 459
BsaWI	WCCGGW	1 cut(s)	584
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 371, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 396, 441
Bse3DI	GCAATG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	201, 459
BseLI	CCNNNNNNNGG	3 cut(s)	226, 396, 441
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	3 cut(s)	380, 409, 454
BseRI	GAGGAG	9 cut(s)	73, 242, 245, 248, 251, 263, 266, 476, 590
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	585
BslI	CCNNNNNNNGG	3 cut(s)	226, 396, 441
BsmAI	GTCTC	4 cut(s)	57, 94, 100, 201
BsmBI	CGTCTC	4 cut(s)	57, 94, 100, 201
BsnI	GGCC	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp1407I	TGTACA	1 cut(s)	279
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	3 cut(s)	379, 408, 453
BspLI	GGNNCC	1 cut(s)	558
BsrBI	CCGCTC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	201, 459
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	201
Bst6I	CTCTTC	2 cut(s)	330, 495
BstACI	GRCGYC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	279
BstDEI	CTNAG	4 cut(s)	366, 395, 440, 567
BstMAI	GTCTC	4 cut(s)	57, 94, 100, 201
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 273, 297, 306, 452
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	2 cut(s)	138, 353
BsuRI	GGCC	1 cut(s)	455
BtrI	CACGTC	1 cut(s)	402
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	2 cut(s)	100, 283
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	4 cut(s)	366, 395, 440, 567
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	330, 495
EarI	CTCTTC	2 cut(s)	330, 495
EciI	GGCGGA	3 cut(s)	132, 356, 461
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	4 cut(s)	57, 94, 100, 201
FaeI	CATG	2 cut(s)	103, 286
FaiI	YATR	4 cut(s)	101, 284, 407, 536
FatI	CATG	2 cut(s)	99, 282
FauI	CCCGC	2 cut(s)	260, 287
Fnu4HI	GCNGC	7 cut(s)	146, 149, 186, 189, 192, 292, 456
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	7 cut(s)	146, 149, 186, 189, 192, 292, 456
GluI	GCNGC	7 cut(s)	146, 149, 186, 189, 192, 292, 456
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	103, 286
HinfI	GANTC	3 cut(s)	38, 71, 107
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	1 cut(s)	376
Hpy188I	TCNGA	8 cut(s)	46, 106, 130, 160, 175, 226, 369, 421
Hpy188III	TCNNGA	1 cut(s)	397
HpyAV	CCTTC	7 cut(s)	250, 445, 490, 499, 505, 511, 517
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	3 cut(s)	215, 300, 330
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 273, 297, 306, 452
HpyF3I	CTNAG	4 cut(s)	366, 395, 440, 567
HpySE526I	ACGT	1 cut(s)	401
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	103, 286
LmnI	GCTCC	1 cut(s)	562
LpnPI	CCDG	6 cut(s)	42, 48, 382, 395, 427, 573
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	1 cut(s)	401
MbiI	CCGCTC	1 cut(s)	392
MboII	GAAGA	7 cut(s)	143, 188, 191, 254, 347, 358, 512
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	3 cut(s)	75, 479, 539
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	374
MspI	CCGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	5 cut(s)	191, 273, 297, 306, 452
NlaIII	CATG	2 cut(s)	103, 286
NlaIV	GGNNCC	1 cut(s)	558
NmeAIII	GCCGAG	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	71, 107
PkrI	GCNGC	7 cut(s)	147, 150, 187, 190, 193, 293, 457
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	558
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SatI	GCNGC	7 cut(s)	146, 149, 186, 189, 192, 292, 456
SchI	GAGTC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	435
SetI	ASST	9 cut(s)	142, 311, 319, 384, 389, 404, 531, 565, 573
SfaNI	GCATC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	75, 479, 539
StyI	CCWWGG	1 cut(s)	201
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	2 cut(s)	21, 378
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	75, 479, 539
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	6 cut(s)	148, 188, 191, 194, 294, 458
TfiI	GAWTC	2 cut(s)	71, 107
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	2 cut(s)	76, 82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.