Rh7BG297900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004333
Physical Location & Seq
Forward (+)
28263844 .. 28266564
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG297900.1

Sequence Viewer

Length: 357 bp
ATGTGTCGAACAGTTGAAGCGTCGAAGTGTCGAAGGCTCGAGAGGACGAGAGAGACAGAAACTCAGGAAAGGATAAGAGGGAAGGGAAATGTCGGGGACTCGGGGCATCGCGAAGATAAATTAGGGTTGAGGTTTACTACTCGAGAGTACAATGTGGATATGAGGATGGGAGGCGCTGCCATCACAACCGAACCTGACTCTTCCAACTCCACGCTTCCGCTGCCTTCTCAGAAAAATGACGGCCAATCAGAGAATGCCGAGAAAGCAGAATTGGAGAAGGAAGAGGATTCGATGAGTGAGAGCTCAGAGCACAAAGCCAGATCAATTGGGGATTCTACTGACAAGCAAGAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.18

Weight (kDa)

5.17

Isoelectric Point (pI)

59.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 111
AciI CCGC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 241
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 1 cut(s) 17
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
Alw21I GWGCWC 2 cut(s) 305, 312
Alw26I GTCTC 1 cut(s) 47
Ama87I CYCGRG 3 cut(s) 38, 100, 141
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 176, 220
AspLEI GCGC 1 cut(s) 176
AvaI CYCGRG 3 cut(s) 38, 100, 141
BanII GRGCYC 1 cut(s) 305
Bbv12I GWGCWC 2 cut(s) 305, 312
BbvI GCAGC 2 cut(s) 163, 207
BccI CCATC 2 cut(s) 160, 188
BceAI ACGGC 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 2 cut(s) 177, 221
BlsI GCNGC 2 cut(s) 178, 222
BmeT110I CYCGRG 3 cut(s) 38, 100, 141
BmsI GCATC 1 cut(s) 115
BseGI GGATG 1 cut(s) 171
BseMII CTCAG 3 cut(s) 77, 242, 318
BseXI GCAGC 2 cut(s) 163, 207
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 305, 312
BsiHKCI CYCGRG 3 cut(s) 38, 100, 141
BslFI GGGAC 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 1 cut(s) 243
BsoBI CYCGRG 3 cut(s) 38, 100, 141
Bsp1286I GDGCHC 2 cut(s) 305, 312
Bsp143I GATC 1 cut(s) 320
Bsp68I TCGCGA 1 cut(s) 111
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 3 cut(s) 76, 241, 317
BspFNI CGCG 1 cut(s) 111
BssMI GATC 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 205, 276
BstDEI CTNAG 3 cut(s) 63, 228, 304
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 1 cut(s) 320
BstMWI GCNNNNNNNGC 2 cut(s) 220, 263
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 163, 207
BsuRI GGCC 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 92
BtsCI GGATG 1 cut(s) 171
BtuMI TCGCGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 176
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 148
CviJI RGCY 4 cut(s) 37, 243, 303, 317
CviKI_1 RGCY 4 cut(s) 37, 243, 303, 317
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 3 cut(s) 63, 228, 304
DpnI GATC 1 cut(s) 322
DpnII GATC 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 205, 276
EarI CTCTTC 2 cut(s) 205, 276
Ecl136II GAGCTC 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 303
Eco88I CYCGRG 3 cut(s) 38, 100, 141
EcoICRI GAGCTC 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 305
FaiI YATR 1 cut(s) 161
FaqI GGGAC 1 cut(s) 110
Fnu4HI GCNGC 2 cut(s) 177, 221
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 177, 221
GlaI GCGC 1 cut(s) 175
GluI GCNGC 2 cut(s) 177, 221
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 243
HgaI GACGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 176
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HinfI GANTC 4 cut(s) 98, 197, 287, 332
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 3 cut(s) 231, 250, 307
Hpy188III TCNNGA 4 cut(s) 40, 65, 110, 143
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 5 cut(s) 27, 76, 234, 271, 344
HpyCH4III ACNGT 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 263
HpyF3I CTNAG 3 cut(s) 63, 228, 304
HspAI GCGC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 320
LpnPI CCDG 3 cut(s) 50, 207, 331
Lsp1109I GCAGC 2 cut(s) 163, 207
LweI GCATC 1 cut(s) 115
MalI GATC 1 cut(s) 322
MboI GATC 1 cut(s) 320
MboII GAAGA 3 cut(s) 125, 192, 293
MfeI CAATTG 1 cut(s) 324
MhlI GDGCHC 2 cut(s) 305, 312
MluCI AATT 3 cut(s) 119, 269, 324
MlyI GAGTC 2 cut(s) 92, 191
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 6 cut(s) 36, 71, 123, 156, 164, 277
MspA1I CMGCKG 1 cut(s) 220
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 259
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 220, 263
NdeII GATC 1 cut(s) 320
NmeAIII GCCGAG 1 cut(s) 283
NruI TCGCGA 1 cut(s) 111
PaeR7I CTCGAG 2 cut(s) 38, 141
PctI GAATGC 1 cut(s) 259
PfeI GAWTC 2 cut(s) 287, 332
PkrI GCNGC 2 cut(s) 178, 222
PleI GAGTC 2 cut(s) 92, 191
PpsI GAGTC 2 cut(s) 92, 191
Psp124BI GAGCTC 1 cut(s) 305
RruI TCGCGA 1 cut(s) 111
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SacI GAGCTC 1 cut(s) 305
SatI GCNGC 2 cut(s) 177, 221
Sau3AI GATC 1 cut(s) 320
SchI GAGTC 2 cut(s) 92, 191
SduI GDGCHC 2 cut(s) 305, 312
SetI ASST 4 cut(s) 134, 196, 305, 355
SfaNI GCATC 1 cut(s) 115
Sfr274I CTCGAG 2 cut(s) 38, 141
SlaI CTCGAG 2 cut(s) 38, 141
SmlI CTYRAG 2 cut(s) 38, 141
SmoI CTYRAG 2 cut(s) 38, 141
Sse9I AATT 3 cut(s) 119, 269, 324
SsiI CCGC 1 cut(s) 218
SstI GAGCTC 1 cut(s) 305
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 6 cut(s) 7, 23, 31, 39, 142, 290
TasI AATT 3 cut(s) 119, 269, 324
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 2 cut(s) 287, 332
TseI GCWGC 2 cut(s) 176, 220
XhoI CTCGAG 2 cut(s) 38, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.