Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004333

Physical Location & Seq

Genomic Coordinates Reverse (-)

13456264 .. 13456980

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATCAGAAACATTGCTTCGATGGCTGGTAAGTTCCTCAAAATGGAGGATAAGCTTTTTGCAAATCAAGGCAAGGGTGTGCAAACACCTATCCTGCCATCTATTTGCAAGTCTCTCTTCCAACCCAAGGAAGCTGTGATCCCAACCCCGGCCATTGAAATATCCCACCCTGACATAGCTGCTCCAAGGGATGGCATGGAAGTTGAGAAGGAAGTACAGTCTGAACATGATGATAATACCCAAAACCCAAAAGCTGCTGATGCTTCTAAAGGTCCACCTGCACATGTTGAAGTAAGTACTAAAGAGAATAGGGGAGACAAGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCK

Protein Analysis

108

Amino Acids

11.77

Weight (kDa)

6.29

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14048 AT1G14060
fragaria_vesca	FvH4_5g26420 FvH4_7g07760
malus_domestica	MD04G1004200.v1.1 MD06G1002200.v1.1
prunus_persica	Prupe.1G004000_v2.0.a1 Prupe.5G003300_v2.0.a1
pyrus_communis	pycom04g00420 pycom06g00230
rosa_chinensis	RchiOBHm_Chr1g0342011 RchiOBHm_Chr7g0217291
rosa_laevigata	RLG00000002498 RLG00000029137
rosa_multiflora	Rmu_co8386161.1_g000001 Rmu_sc0002161.1_g000004 Rmu_sc0013923.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242470 Rroxscaffold_4G00312730
rosa_rugosa	Rorug07G0167300 Rorug07G0167400 Rorug07G0167500 Rorug07G0167600 Rorug07G0167700
rosa_samantha	Rh1AG168000 Rh1BG134700 Rh1DG168800 Rh7AG306900 Rh7BG297900 Rh7CG326000 Rh7DG306600
rosa_wichuraiana	Rw7G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	191
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	150
AfaI	GTAC	2 cut(s)	216, 298
AfeI	AGCGCT	1 cut(s)	323
AfiI	CCNNNNNNNGG	4 cut(s)	43, 127, 148, 191
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	158, 290
AluBI	AGCT	4 cut(s)	55, 134, 179, 254
AluI	AGCT	4 cut(s)	55, 134, 179, 254
Alw26I	GTCTC	2 cut(s)	117, 309
AlwI	GGATC	1 cut(s)	133
Aor51HI	AGCGCT	1 cut(s)	323
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	179, 254
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	166, 241
BccI	CCATC	3 cut(s)	16, 106, 185
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	117, 309
BfoI	RGCGCY	1 cut(s)	325
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	2 cut(s)	180, 255
BlsI	GCNGC	2 cut(s)	181, 256
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	126, 147, 185
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 127, 148, 191
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	126, 147, 185
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	4 cut(s)	43, 127, 148, 191
BseMI	GCAATG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	166, 241
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	4 cut(s)	43, 127, 148, 191
BsmAI	GTCTC	2 cut(s)	117, 309
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	3, 138
BspANI	GGCC	1 cut(s)	152
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	12
BssECI	CCNNGG	3 cut(s)	126, 147, 185
BssMI	GATC	2 cut(s)	3, 138
BssT1I	CCWWGG	2 cut(s)	126, 185
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	2 cut(s)	6, 141
BstMAI	GTCTC	2 cut(s)	117, 309
BstMBI	GATC	2 cut(s)	3, 138
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 260
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	166, 241
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	286
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	215, 297
CviAII	CATG	3 cut(s)	196, 227, 284
CviJI	RGCY	6 cut(s)	26, 55, 134, 152, 179, 254
CviKI_1	RGCY	6 cut(s)	26, 55, 134, 152, 179, 254
CviQI	GTAC	2 cut(s)	215, 297
DpnI	GATC	2 cut(s)	5, 140
DpnII	GATC	2 cut(s)	3, 138
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	126, 185
Eco47I	GGWCC	1 cut(s)	272
Eco47III	AGCGCT	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	126, 185
ErhI	CCWWGG	2 cut(s)	126, 185
FaeI	CATG	3 cut(s)	199, 230, 287
FaiI	YATR	4 cut(s)	176, 197, 228, 285
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FatI	CATG	3 cut(s)	195, 226, 283
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	180, 255
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	180, 255
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	2 cut(s)	180, 255
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	199, 230, 287
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	53
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	8, 223
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	4 cut(s)	62, 82, 108, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 260
Hsp92II	CATG	3 cut(s)	199, 230, 287
HspAI	GCGC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 138
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	5 cut(s)	12, 107, 162, 183, 291
Lsp1109I	GCAGC	2 cut(s)	166, 241
LweI	GCATC	1 cut(s)	250
MalI	GATC	2 cut(s)	5, 140
MboI	GATC	2 cut(s)	3, 138
MboII	GAAGA	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	40, 47
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	23, 260
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	3, 138
NlaIII	CATG	3 cut(s)	199, 230, 287
NspI	RCATGY	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	286
PciI	ACATGT	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	181, 256
PscI	ACATGT	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	2 cut(s)	216, 298
RsaNI	GTAC	2 cut(s)	215, 297
SatI	GCNGC	2 cut(s)	180, 255
Sau3AI	GATC	2 cut(s)	3, 138
Sau96I	GGNCC	1 cut(s)	272
ScaI	AGTACT	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	7 cut(s)	57, 91, 136, 181, 256, 274, 280
SfaNI	GCATC	1 cut(s)	250
SinI	GGWCC	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	126, 185
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	20
TatI	WGTACW	2 cut(s)	214, 296
TseI	GCWGC	2 cut(s)	179, 254
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	272
XceI	RCATGY	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.