Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004333

Physical Location & Seq

Genomic Coordinates Reverse (-)

13479097 .. 13480789

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0167500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCAGCGAGGCCAAAAGCGCAGAGAAGACTCGGTTCTCGCCGGAATTGAAGAATCTCTTCACTCTGGAATCTCCGTCGTTCACTCTGGTTTTGGCGCGGAGGTATTCGGCGGCGAGGCGGGAGTGGAGAGACTTGATTCTATCCTGATTCTGGTCCAGCACAATTGCGTCCAGCCCTTTACCCAAGAATCCAAGGCTGGGCGTAAAGTTCAGTACATTGCGTGCAAACAATTTCTTGCTGGTCTACTTGAGCACGGCAGACTTACACAGCAACAATTAATGGACAGAGCCAATCAGAAATCCAAATCAAATAGCAGTCAAGTTCAGAATGCTGCTCAAGATAACTTTGTTAGACTTGTGACTGCTCGTTTTGTTGAACGTTGCCCGGCCCCTGAACCACTTCTTGAAGAAGCACCTGAACAAGAAGGTCCAAAGAAGCCACGCTCTAAATCTGCTAAGGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCK

Protein Analysis

155

Amino Acids

17.14

Weight (kDa)

8.49

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14048 AT1G14060
fragaria_vesca	FvH4_5g26420 FvH4_7g07760
malus_domestica	MD04G1004200.v1.1 MD06G1002200.v1.1
prunus_persica	Prupe.1G004000_v2.0.a1 Prupe.5G003300_v2.0.a1
pyrus_communis	pycom04g00420 pycom06g00230
rosa_chinensis	RchiOBHm_Chr1g0342011 RchiOBHm_Chr7g0217291
rosa_laevigata	RLG00000002498 RLG00000029137
rosa_multiflora	Rmu_co8386161.1_g000001 Rmu_sc0002161.1_g000004 Rmu_sc0013923.1_g000003
rosa_roxburghii	Rroxscaffold_3G00242470 Rroxscaffold_4G00312730
rosa_rugosa	Rorug07G0167300 Rorug07G0167400 Rorug07G0167500 Rorug07G0167600 Rorug07G0167700
rosa_samantha	Rh1AG168000 Rh1BG134700 Rh1DG168800 Rh7AG306900 Rh7BG297900 Rh7CG326000 Rh7DG306600
rosa_wichuraiana	Rw7G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	244
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	98, 111, 119
AclI	AACGTT	1 cut(s)	379
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	151, 198
AgsI	TTSAA	3 cut(s)	50, 377, 407
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	124
AoxI	GGCC	2 cut(s)	10, 387
ApeKI	GCWGC	2 cut(s)	4, 332
AseI	ATTAAT	1 cut(s)	278
Asp700I	GAANNNNTTC	2 cut(s)	57, 399
AspLEI	GCGC	2 cut(s)	21, 98
AspS9I	GGNCC	3 cut(s)	154, 388, 428
AsuC2I	CCSGG	1 cut(s)	386
AvaII	GGWCC	2 cut(s)	154, 428
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	16, 319
BceAI	ACGGC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	124
BisI	GCNGC	3 cut(s)	5, 112, 333
BlsI	GCNGC	3 cut(s)	6, 113, 334
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	2 cut(s)	154, 428
BmgT120I	GGNCC	3 cut(s)	154, 388, 428
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	2 cut(s)	269, 321
BpuMI	CCSGG	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 198
Bse3DI	GCAATG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	151, 198
BseMI	GCAATG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	16, 319
BseYI	CCCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	12, 389
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	42, 386
BslI	CCNNNNNNNGG	2 cut(s)	151, 198
BsmAI	GTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	12, 389
Bsp1286I	GDGCHC	1 cut(s)	255
BspACI	CCGC	3 cut(s)	98, 111, 119
BspANI	GGCC	2 cut(s)	12, 389
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	21, 98
BstMAI	GTCTC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	16, 319
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	12, 389
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	2 cut(s)	21, 98
Cfr13I	GGNCC	3 cut(s)	154, 388, 428
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	214
CviJI	RGCY	6 cut(s)	12, 175, 197, 290, 389, 439
CviKI_1	RGCY	6 cut(s)	12, 175, 197, 290, 389, 439
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	154, 428
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaiI	YATR	1 cut(s)	466
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	5, 112, 333
Fsp4HI	GCNGC	3 cut(s)	5, 112, 333
GlaI	GCGC	2 cut(s)	20, 97
GluI	GCNGC	3 cut(s)	5, 112, 333
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	12, 389
HapII	CCGG	2 cut(s)	42, 386
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	2 cut(s)	21, 98
Hin6I	GCGC	2 cut(s)	19, 96
HinP1I	GCGC	2 cut(s)	19, 96
HinfI	GANTC	6 cut(s)	29, 53, 69, 137, 148, 188
HpaII	CCGG	2 cut(s)	42, 386
Hpy166II	GTNNAC	2 cut(s)	82, 245
Hpy188I	TCNGA	2 cut(s)	297, 327
Hpy188III	TCNNGA	4 cut(s)	66, 145, 338, 404
Hpy8I	GTNNAC	2 cut(s)	82, 245
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	419
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	2 cut(s)	4, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	1 cut(s)	379
HspAI	GCGC	2 cut(s)	19, 96
Lsp1109I	GCAGC	2 cut(s)	16, 319
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	358
MboII	GAAGA	4 cut(s)	38, 50, 62, 419
MfeI	CAATTG	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	5 cut(s)	45, 163, 230, 275, 461
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	94, 109
MroXI	GAANNNNTTC	2 cut(s)	57, 399
MseI	TTAA	1 cut(s)	278
MspI	CCGG	2 cut(s)	42, 386
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	334
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	386
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	358
PctI	GAATGC	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	57, 399
PfeI	GAWTC	5 cut(s)	53, 69, 137, 148, 188
PkrI	GCNGC	3 cut(s)	6, 113, 334
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PshBI	ATTAAT	1 cut(s)	278
Psp1406I	AACGTT	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	3 cut(s)	154, 388, 428
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	3 cut(s)	5, 112, 333
Sau96I	GGNCC	3 cut(s)	154, 388, 428
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	4 cut(s)	105, 382, 418, 430
SinI	GGWCC	2 cut(s)	154, 428
SmlI	CTYRAG	2 cut(s)	248, 336
SmoI	CTYRAG	2 cut(s)	248, 336
Sse9I	AATT	5 cut(s)	45, 163, 230, 275, 461
SsiI	CCGC	3 cut(s)	98, 111, 119
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	1 cut(s)	382
TasI	AATT	5 cut(s)	45, 163, 230, 275, 461
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	5 cut(s)	53, 69, 137, 148, 188
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	4, 332
Tsp45I	GTSAC	1 cut(s)	358
TspGWI	ACGGA	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	154, 428
VspI	ATTAAT	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	244
XmnI	GAANNNNTTC	2 cut(s)	57, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.