Prupe.6G114000_v2.0.a1

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
8224894 .. 8229779
4886 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G114000.1

Sequence Viewer

Length: 2007 bp
ATGACTCGGATGATTATCCAGCAATCAGAGACCCAGACTCAGAAGATAAAGAGAGTGGTTCCTCTGGAAATGAGCAACAAGGATCACTTGGCCAATGATCATGGTAATGATGAGGAAAGTGATAGTTCTGAACTTCATGAAGGAGTTGAGGAGAGTGATTCATCTGAAGATGAGGTGGTTCCTCGAAATACAATTGGTGATGTCCCCTTGGAGTGGTATCAGGATGAGAAACATATTGAACTGACGAAAGAAGATATCAAATCTATAAGCAGATTGCTCGAAGGAAAGGCTCCCCATGGTGACTTTGATCCTTATGCGCCATATGTTGATTGGTTTAAATGGGATGGCTCCAAGCATCCACTGTCAAATGCACCTGATCCCAAGAAACGATTAATTCCTTCAAAATCTGAAAGTAAACTGGTTAATAAGATCAAGTTGGCCATTCGCAAGGGTTTGATTAAGCCTAAAAAGTCCAAAGAGGTGGAGGAAGAAGAAGAAAGTGTTTATCCCTTGTGGGGAGATGACTCTAATTCAACAGAAAAGAATGACCATCTATCTTACATTCCTGCACCAAAGCCAAAATTGCCTGGCCATGAGGAGTCCTTCAATCCTTCTATAGAATACATCCCAACACAAGAAGAGATCAGTTCTTATCAGTTAACGTACGAGGAAGACCATCCTAAATTTATACCTAAAAGGTTTACATCTATGACAAGCATCCCTGCATATGAGAATGCTGTTAAGGAATGCTTTGAAAGATGTTTGGATCTATTTGTGCCCCCGAGTCCCAAAAAAACGCTATATCCTTTTATGTTCCAGCTTAATATCGATCCTGAGTCTCTGAAGCCCAAGCTACCAAACCGAAGTGATCTTAAGCCTTACCCTGTTTCTTGTTATCTTGAGTATAGAGGTCACGAAGATGCAGTTACGTCAGTTTCTGTAGAAGCTTCAGGGCAGTGGATTGCATCAGGTCTCATCATCTGTTCTTCTTACAGGTTTATTGGACGGACTGTGCGTATTTGGGAGGTTGAAACTGGTAGATGTCTAAAACACTATAAGATTGGCGAAGCGATCAAATATGTAGCGTGGAATCCTAATCCCGAGCATTCTATACTGGCTGTCTCTGTGGGCCAAGACGTACTTCTTTTGAACACTGGTTGTGGAAATGAAGAAGTACAGAAAAGGACTAAAGAACTTCTCTCTGTTGAGATGCCTGTGATGACTCTGGTCAGCAAAACAGCATCCAGTGTAAGCTGGCTTCAAGATGATAAACTTGAGGGAATCAGGTTAAGGCACTCTAAGTCTAAGACTGTTGCTTCAGTAGAATGGCATCGTAAAGTATCCTTCGACAGTGGTGCCAGCGGATATCCTTTCTGCATATTCATCTCCCTGGATTTTCTTGACTTGGCTTTACGTGAATCAAGAGCTATTTTTATACACAAGCTCTCTAAGAAGTTTACTCAGACACTTTCATTCAAGTTGCGAGGGATTGCAGTTACTTCAGTTTTCCATCCTACACGTTCCTTCTTCTTCATTTCAACAAAGAAGATAATTCGTGTTTATAATCTGGTGAAAGAGGGAAAGGTCGTCAGAAAACTTGAGATCAGACTACGTGAAGTCTCCTTTATTGCAGTTCATCCTTCTGGTGTTCATATAATTGTGGGGAGCAGAGAAGGAAAACTATGTTGGTTCGACATGGACCTTTCATCTAAACCTTACTCTCAAGCATATTTCTGGAAGATGTTGCATCAGAAGGACATCAACAATGTGTGTTTTCATCGCTCGTGCCCCCTGTTTGCAACATGCTCTGATGATTGCACTGCATATGTTTTTCATGGCATGGTTTATTCAGATCTTAACAAGAACCCTCTTATTGTTCCATTGGAAATACTCCGAGGTCATTCAAGCACAAATGAGAGAGGTGTAATGGACTGTAAATTCCATCCAAGGCAGCCATGGTTATTCACTGCTGGTGCGGACTCGGTGGTTAGACTTTATTGCCATTGA

Protein Analysis

669

Amino Acids

76.44

Weight (kDa)

6.93

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1563
AccB1I GGYRCC 1 cut(s) 1355
AciI CCGC 2 cut(s) 1362, 1976
AclWI GGATC 5 cut(s) 90, 302, 371, 774, 824
AcoI YGGCCR 3 cut(s) 90, 438, 589
AcsI RAATTY 2 cut(s) 683, 1937
AcuI CTGAAG 5 cut(s) 186, 863, 933, 1302, 1485
AfaI GTAC 3 cut(s) 665, 1140, 1176
AfiI CCNNNNNNNGG 2 cut(s) 213, 515
AflII CTTAAG 1 cut(s) 872
AflIII ACRYGT 1 cut(s) 1517
AjnI CCWGG 2 cut(s) 586, 1389
AjuI GAANNNNNNNTTGG 4 cut(s) 1125, 1157, 1669, 1701
AluBI AGCT 6 cut(s) 820, 853, 947, 1254, 1427, 1444
AluI AGCT 6 cut(s) 820, 853, 947, 1254, 1427, 1444
Alw26I GTCTC 5 cut(s) 23, 843, 977, 1126, 1624
AlwI GGATC 5 cut(s) 90, 302, 371, 774, 824
AlwNI CAGNNNCTG 1 cut(s) 938
Ama87I CYCGRG 2 cut(s) 781, 1100
AoxI GGCC 4 cut(s) 90, 438, 589, 1129
ApeKI GCWGC 1 cut(s) 1951
ApoI RAATTY 2 cut(s) 683, 1937
AseI ATTAAT 1 cut(s) 392
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 2 cut(s) 1129, 1699
AsuHPI GGTGA 3 cut(s) 209, 311, 1582
AvaI CYCGRG 2 cut(s) 781, 1100
AvaII GGWCC 1 cut(s) 1699
BaeGI GKGCMC 2 cut(s) 780, 1790
BalI TGGCCA 3 cut(s) 92, 440, 591
BanI GGYRCC 1 cut(s) 1355
BarI GAAGNNNNNNTAC 2 cut(s) 1242, 1274
BauI CACGAG 1 cut(s) 1783
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 1 cut(s) 1963
BccI CCATC 5 cut(s) 338, 558, 684, 1518, 1950
BcgI CGANNNNNNTGC 4 cut(s) 259, 293, 1337, 1371
BciT130I CCWGG 2 cut(s) 588, 1391
BciVI GTATCC 1 cut(s) 1351
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 5 cut(s) 23, 843, 977, 1126, 1624
BfmI CTRYAG 2 cut(s) 615, 939
BfrI CTTAAG 1 cut(s) 872
BfuI GTATCC 1 cut(s) 1351
BglII AGATCT 1 cut(s) 1852
BisI GCNGC 1 cut(s) 1952
BlsI GCNGC 1 cut(s) 1953
Bme1390I CCNGG 2 cut(s) 588, 1391
Bme18I GGWCC 1 cut(s) 1699
BmeT110I CYCGRG 2 cut(s) 781, 1100
BmgT120I GGNCC 2 cut(s) 1129, 1699
BmiI GGNNCC 5 cut(s) 60, 180, 291, 349, 1357
BmrFI CCNGG 2 cut(s) 588, 1391
BmsI GCATC 8 cut(s) 364, 726, 910, 974, 1200, 1250, 1339, 1756
BoxI GACNNNNGTC 1 cut(s) 1226
BpiI GAAGAC 1 cut(s) 678
BpuEI CTTGAG 4 cut(s) 920, 1295, 1619, 1707
Bsa29I ATCGAT 1 cut(s) 828
BsaAI YACGTR 2 cut(s) 1415, 1613
BsaBI GATNNNNATC 1 cut(s) 14
BsaI GGTCTC 2 cut(s) 23, 977
BsaJI CCNNGG 6 cut(s) 207, 295, 1389, 1894, 1946, 1955
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 515
Bse1I ACTGG 5 cut(s) 423, 1039, 1119, 1159, 1245
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 2 cut(s) 588, 1391
BseCI ATCGAT 1 cut(s) 828
BseDI CCNNGG 6 cut(s) 207, 295, 1389, 1894, 1946, 1955
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 213, 515
BseMII CTCAG 3 cut(s) 53, 825, 1475
BseNI ACTGG 5 cut(s) 423, 1039, 1119, 1159, 1245
BseRI GAGGAG 2 cut(s) 164, 611
BseSI GKGCMC 2 cut(s) 780, 1790
BseXI GCAGC 1 cut(s) 1963
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 4 cut(s) 92, 440, 591, 1131
BshNI GGYRCC 1 cut(s) 1355
BshVI ATCGAT 1 cut(s) 828
BsiHKCI CYCGRG 2 cut(s) 781, 1100
BsiWI CGTACG 1 cut(s) 663
BslFI GGGAC 2 cut(s) 188, 771
BslI CCNNNNNNNGG 2 cut(s) 213, 515
BsmAI GTCTC 5 cut(s) 23, 843, 977, 1126, 1624
BsmFI GGGAC 2 cut(s) 188, 771
BsmI GAATGC 3 cut(s) 739, 752, 1105
BsnI GGCC 4 cut(s) 92, 440, 591, 1131
Bso31I GGTCTC 2 cut(s) 23, 977
BsoBI CYCGRG 2 cut(s) 781, 1100
Bsp1286I GDGCHC 2 cut(s) 780, 1790
Bsp19I CCATGG 2 cut(s) 295, 1955
BspACI CCGC 2 cut(s) 1362, 1976
BspANI GGCC 4 cut(s) 92, 440, 591, 1131
BspCNI CTCAG 3 cut(s) 52, 826, 1474
BspDI ATCGAT 1 cut(s) 828
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 5 cut(s) 60, 180, 291, 349, 1357
BspPI GGATC 5 cut(s) 90, 302, 371, 774, 824
BspT107I GGYRCC 1 cut(s) 1355
BspTI CTTAAG 1 cut(s) 872
BspTNI GGTCTC 2 cut(s) 23, 977
BsrI ACTGG 5 cut(s) 423, 1039, 1119, 1159, 1245
BssECI CCNNGG 6 cut(s) 207, 295, 1389, 1894, 1946, 1955
BssSI CACGAG 1 cut(s) 1783
BssT1I CCWWGG 4 cut(s) 207, 295, 1946, 1955
Bst2BI CACGAG 1 cut(s) 1783
Bst2UI CCWGG 2 cut(s) 588, 1391
Bst4CI ACNGT 5 cut(s) 363, 1012, 1312, 1352, 1934
Bst6I CTCTTC 1 cut(s) 633
BstAFI CTTAAG 1 cut(s) 872
BstBAI YACGTR 2 cut(s) 1415, 1613
BstC8I GCNNGC 2 cut(s) 1256, 1360
BstDEI CTNAG 6 cut(s) 39, 834, 1299, 1305, 1449, 1461
BstDSI CCRYGG 2 cut(s) 295, 1955
BstHHI GCGC 1 cut(s) 319
BstMAI GTCTC 5 cut(s) 23, 843, 977, 1126, 1624
BstMWI GCNNNNNNNGC 1 cut(s) 583
BstNI CCWGG 2 cut(s) 588, 1391
BstNSI RCATGY 1 cut(s) 1806
BstPAI GACNNNNGTC 1 cut(s) 1226
BstSCI CCNGG 2 cut(s) 586, 1389
BstSFI CTRYAG 2 cut(s) 615, 939
BstSLI GKGCMC 2 cut(s) 780, 1790
BstV1I GCAGC 1 cut(s) 1963
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 2 cut(s) 766, 1852
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 2 cut(s) 766, 1852
Bsu15I ATCGAT 1 cut(s) 828
BsuI GTATCC 1 cut(s) 1351
BsuRI GGCC 4 cut(s) 92, 440, 591, 1131
BsuTUI ATCGAT 1 cut(s) 828
BtgI CCRYGG 2 cut(s) 295, 1955
BtgZI GCGATG 1 cut(s) 1763
BtsI GCAGTG 3 cut(s) 962, 1818, 1965
BtsIMutI CAGTG 7 cut(s) 359, 962, 1152, 1252, 1357, 1818, 1965
Cac8I GCNNGC 2 cut(s) 1256, 1360
CaiI CAGNNNCTG 1 cut(s) 938
CciI TCATGA 1 cut(s) 136
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 1129, 1699
ClaI ATCGAT 1 cut(s) 828
Csp6I GTAC 3 cut(s) 664, 1139, 1175
CviAII CATG 9 cut(s) 101, 137, 296, 593, 1696, 1803, 1835, 1840, 1956
CviQI GTAC 3 cut(s) 664, 1139, 1175
DdeI CTNAG 6 cut(s) 39, 834, 1299, 1305, 1449, 1461
DraI TTTAAA 1 cut(s) 337
EaeI YGGCCR 3 cut(s) 90, 438, 589
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco130I CCWWGG 4 cut(s) 207, 295, 1946, 1955
Eco31I GGTCTC 2 cut(s) 23, 977
Eco32I GATATC 2 cut(s) 256, 1367
Eco47I GGWCC 1 cut(s) 1699
Eco57I CTGAAG 5 cut(s) 186, 863, 933, 1302, 1485
Eco88I CYCGRG 2 cut(s) 781, 1100
EcoRII CCWGG 2 cut(s) 586, 1389
EcoRV GATATC 2 cut(s) 256, 1367
EcoT14I CCWWGG 4 cut(s) 207, 295, 1946, 1955
ErhI CCWWGG 4 cut(s) 207, 295, 1946, 1955
FaeI CATG 9 cut(s) 104, 140, 299, 596, 1699, 1806, 1838, 1843, 1959
FalI AAGNNNNNCTT 6 cut(s) 71, 103, 734, 766, 1125, 1157
FaqI GGGAC 2 cut(s) 188, 771
FatI CATG 9 cut(s) 100, 136, 295, 592, 1695, 1802, 1834, 1839, 1955
FauNDI CATATG 3 cut(s) 322, 727, 1825
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 1952
Fsp4HI GCNGC 1 cut(s) 1952
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 1952
HaeIII GGCC 4 cut(s) 92, 440, 591, 1131
HhaI GCGC 1 cut(s) 319
Hin1II CATG 9 cut(s) 104, 140, 299, 596, 1699, 1806, 1838, 1843, 1959
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HindIII AAGCTT 1 cut(s) 945
HpaI GTTAAC 1 cut(s) 660
HphI GGTGA 3 cut(s) 209, 311, 1582
Hpy166II GTNNAC 4 cut(s) 416, 660, 702, 1458
Hpy8I GTNNAC 4 cut(s) 416, 660, 702, 1458
HpyCH4III ACNGT 5 cut(s) 363, 1012, 1312, 1352, 1934
HpyCH4IV ACGT 6 cut(s) 662, 929, 1137, 1414, 1519, 1612
HpyF10VI GCNNNNNNNGC 1 cut(s) 583
HpyF3I CTNAG 6 cut(s) 39, 834, 1299, 1305, 1449, 1461
HpySE526I ACGT 6 cut(s) 662, 929, 1137, 1414, 1519, 1612
Hsp92II CATG 9 cut(s) 104, 140, 299, 596, 1699, 1806, 1838, 1843, 1959
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 660
LmnI GCTCC 3 cut(s) 295, 353, 1665
Lsp1109I GCAGC 1 cut(s) 1963
LweI GCATC 8 cut(s) 364, 726, 910, 974, 1200, 1250, 1339, 1756
MaeII ACGT 6 cut(s) 662, 929, 1137, 1414, 1519, 1612
MaeIII GTNAC 4 cut(s) 299, 911, 925, 1495
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 2 cut(s) 766, 1852
MhlI GDGCHC 2 cut(s) 780, 1790
MlsI TGGCCA 3 cut(s) 92, 440, 591
MluCI AATT 8 cut(s) 192, 393, 529, 581, 683, 1551, 1656, 1937
MluNI TGGCCA 3 cut(s) 92, 440, 591
MlyI GAGTC 7 cut(s) 31, 518, 608, 793, 845, 1216, 1973
Mox20I TGGCCA 3 cut(s) 92, 440, 591
MscI TGGCCA 3 cut(s) 92, 440, 591
MslI CAYNNNNRTG 2 cut(s) 105, 918
Msp20I TGGCCA 3 cut(s) 92, 440, 591
MspA1I CMGCKG 1 cut(s) 1362
MspCI CTTAAG 1 cut(s) 872
MspR9I CCNGG 2 cut(s) 588, 1391
MunI CAATTG 1 cut(s) 192
Mva1269I GAATGC 3 cut(s) 739, 752, 1105
MvaI CCWGG 2 cut(s) 588, 1391
MwoI GCNNNNNNNGC 1 cut(s) 583
NcoI CCATGG 2 cut(s) 295, 1955
NdeI CATATG 3 cut(s) 322, 727, 1825
NlaIII CATG 9 cut(s) 104, 140, 299, 596, 1699, 1806, 1838, 1843, 1959
NlaIV GGNNCC 5 cut(s) 60, 180, 291, 349, 1357
NmuCI GTSAC 2 cut(s) 299, 911
NspI RCATGY 1 cut(s) 1806
PagI TCATGA 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 1012
PctI GAATGC 3 cut(s) 739, 752, 1105
PfeI GAWTC 4 cut(s) 158, 1090, 1281, 1418
Pfl23II CGTACG 1 cut(s) 663
PkrI GCNGC 1 cut(s) 1953
PleI GAGTC 7 cut(s) 31, 518, 607, 792, 844, 1216, 1973
PpsI GAGTC 7 cut(s) 31, 518, 607, 792, 844, 1216, 1973
Ppu21I YACGTR 2 cut(s) 1415, 1613
PshAI GACNNNNGTC 1 cut(s) 1226
PshBI ATTAAT 1 cut(s) 392
PsiI TTATAA 1 cut(s) 1563
Psp6I CCWGG 2 cut(s) 586, 1389
PspGI CCWGG 2 cut(s) 586, 1389
PspLI CGTACG 1 cut(s) 663
PspN4I GGNNCC 5 cut(s) 60, 180, 291, 349, 1357
PspPI GGNCC 2 cut(s) 1129, 1699
PstNI CAGNNNCTG 1 cut(s) 938
PsuI RGATCY 2 cut(s) 766, 1852
RsaI GTAC 3 cut(s) 665, 1140, 1176
RsaNI GTAC 3 cut(s) 664, 1139, 1175
RseI CAYNNNNRTG 2 cut(s) 105, 918
SatI GCNGC 1 cut(s) 1952
Sau96I GGNCC 2 cut(s) 1129, 1699
SchI GAGTC 7 cut(s) 31, 518, 608, 793, 845, 1216, 1973
ScrFI CCNGG 2 cut(s) 588, 1391
SduI GDGCHC 2 cut(s) 780, 1790
SfaNI GCATC 8 cut(s) 364, 726, 910, 974, 1200, 1250, 1339, 1756
SfcI CTRYAG 2 cut(s) 615, 939
SinI GGWCC 1 cut(s) 1699
SmiMI CAYNNNNRTG 2 cut(s) 105, 918
SmlI CTYRAG 5 cut(s) 872, 899, 1274, 1598, 1722
SmoI CTYRAG 5 cut(s) 872, 899, 1274, 1598, 1722
Sse9I AATT 8 cut(s) 192, 393, 529, 581, 683, 1551, 1656, 1937
SsiI CCGC 2 cut(s) 1362, 1976
StyD4I CCNGG 2 cut(s) 586, 1389
StyI CCWWGG 4 cut(s) 207, 295, 1946, 1955
TaaI ACNGT 5 cut(s) 363, 1012, 1312, 1352, 1934
TaiI ACGT 6 cut(s) 665, 932, 1140, 1417, 1522, 1615
TaqI TCGA 5 cut(s) 184, 279, 828, 1347, 1692
TasI AATT 8 cut(s) 192, 393, 529, 581, 683, 1551, 1656, 1937
TatI WGTACW 1 cut(s) 1174
TfiI GAWTC 4 cut(s) 158, 1090, 1281, 1418
TscAI CASTG 7 cut(s) 366, 962, 1159, 1252, 1357, 1825, 1972
TseFI GTSAC 2 cut(s) 299, 911
TseI GCWGC 1 cut(s) 1951
Tsp45I GTSAC 2 cut(s) 299, 911
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 7 cut(s) 366, 962, 1159, 1252, 1357, 1825, 1972
Vha464I CTTAAG 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 1699
VspI ATTAAT 1 cut(s) 392
XapI RAATTY 2 cut(s) 683, 1937
XceI RCATGY 1 cut(s) 1806
XcmI CCANNNNNNNNNTGG 2 cut(s) 327, 1953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.