Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Forward (+)

69967461 .. 69975571

Gene Structure 8111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG499600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGTCTGGTGGTGAAGGATCTGACTTAGAGGATTATCCATCAATCAGAGACAGAGACTCGGAAGATGAAGAGAGTGGTTCCTCTGAAAATGAGGGTGAGCTCAACACCAGCAGAAATGATGGTTTGGCCATTGATCATGGTAATGAGGAGGAAAGTGATAGTTCTGGACTTCATGAAGCAGTCGAGGAAAGTGATTCATCTGAAGATGAGGTTGCTCCCCGAAATACAATTGGTGCTGTTCCCTTGGAGTGGTATCGGGATGAGAAACATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAGAAGGAAAGAGAAGATAAATTACAATCCTTTCTTGCTAGTGCTGATGATTCCAAAAATTGGCGCAAATTTTTGGATGAATACAATGACGAGGAAGTAGAAGTGACAAAAGAAGATATGAAAACTATAAATAGATTGCTTGAAGGAAAGGCGCCACACGGTGACTTTGATCCATATGCGCCTTATGTTGATTGGTTTAAATGGGATGACTCAAAGCATCCACTGTCAAATGCCCCTGAACCCAAGAGACGATTCATTCCTTCAAAATCTGAAAGTAAACTGGTGAAGAGGTTAGTATTAGCAATTCGGAAGGGTTTAATTAAGCCTACAAAGGATGAAGAAGAGGAAGAAGAAAGTGTTTATCCCTTGTGGGGAGACGACTCTAATTCAACGGAAAAGGATGGTAGCCATTTATCTTACATTCCAGCGCCAAAGCCAAAATTGCCAGGGTATGAGGAGTCCTTCAATCCTCCTCCGGAATTCATCCCAACACAAGAAGAGATTGATGCTTATCAGTTAATGTATGAGGAAGACCGCCCTAAGTTTATACCGAAAAGGTTTACATCTATGAGAAGCATCCCTGCATATGAGAATGCTATTAAGGAGTGCTTCGAAAGATGTTTGGATCTATACTTGTGCCCCAGAGTTCGGAAGAAACGTATCAATATTGATCCTGAATCTCTGAAGCCCAAGCTACCAAGCCGAAAGGATCTCAAGCCTTATCCTGTGAAATGTTATCTAGAGTATAGAGGTCACAAAGACACAGTTACATCAGTTTCCACAGAAGCTTCAGGGCAGTGGATTGCATCAGGTTCATCGGATGGAACTGTGCGTATTTGGGAGGTTGAAACTGGTAGATGTCTCAAACTCTGGGAGATTGGAGAAGCTGTCACATATGTAGCTTGGAATCCCAATCCTGAGTATTCCGTATTGGCTGTCTCTGTGGGACAAGATGTACTTATTCTCAACACTGGTTTTGGGAATGAAGAAGTACAGAAAAAAACTAAAGAACTTCTTTCGGCTGAAAGACCTACCACACCAGATGACACGGCTACCTTCGTGAGCTGGATTCAAGATGAAACACATGAGGGCACCAGGTTAAGACATTTTAAGACTGTGTCTTCAGTGGAATGGCATCGTAGAGGAGACTACTTTTCAACGGTGGTGCCAGCAGGCCAATCGAAATCAATTTTTATGCATAGGCTCTCTCAGAAGTCTACCCAGACATTTTCAATCAAGTTGGGTGGGCTTGCAGTTACTTCAGTTTTCCATCCTGTTCGCTCCCACATCTTCATTTCTACAAAGAAAACTATTCGCCAATATGATTTGGTGAAGGGAAAGCAAATCAGAAAGCTTGATACAGGACTAAAAGAAATCTCCTCCATTGCAGTTCATCCTTCTGGTGATCATGTAATTGTGGGGAGCAGAGAAGGAAAATTTTGTTGGTTTGATATGGACCTTTCAACCAAAAAACCTTACCTTATTCGCCACGCTGATTTTCACAATTTTATCAGGTGGCATAAGAAGGACATCAACAATGTGTCTATCCATCGTTTATATCCGTTGTTTGCAACATGCTCTGATGATTGCACTGTACAAGTTTCTCATGGCATGGTTTATTCAGATCTTAACCAGAACCCTCTTATAGTTCCACTGGAAATACTCCGAGGTCATGCAAGCTCAGATGGGAGAGGTGTAATGGATTGCAAATTCCACCCAAGGCAGCCCTGGTTGTTCACGGCCGGTGCTGACTCGGTGATCAGACTTTACTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

693

Amino Acids

79.09

Weight (kDa)

5.61

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	85 - 343	3.5e-100	BOP1NT (NUC169) domain
WD40_CDC20-Fz	PF24807	340 - 415	3.3e-06	CDC20/Fizzy WD40 domain
WD40	PF00400	345 - 381	9.2e-10	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	346 - 425	1.1e-12	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	348 - 480	4.1e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	348 - 419	4.1e-08	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	348 - 430	1e-10	WDHD1 first WD40 domain
WD40_Prp19	PF24814	349 - 412	4.2e-06	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	349 - 410	1.1e-06	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	350 - 414	5.1e-09	EIF3I
WD40_Prp19	PF24814	459 - 589	6.3e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	470 - 691	2.5e-11	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	493 - 640	1.9e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	532 - 691	5.8e-07	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	533 - 635	4.8e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	454, 1394, 1468
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	1520
AccIII	TCCGGA	1 cut(s)	778
AciI	CCGC	1 cut(s)	838
AclWI	GGATC	5 cut(s)	25, 467, 936, 968, 1020
AcoI	YGGCCR	2 cut(s)	126, 2043
AcsI	RAATTY	4 cut(s)	371, 782, 1739, 2012
AcuI	CTGAAG	5 cut(s)	222, 1007, 1077, 1410, 1548
AcyI	GRCGYC	1 cut(s)	455
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	3 cut(s)	1260, 1296, 1899
AfiI	CCNNNNNNNGG	4 cut(s)	249, 363, 674, 951
AgsI	TTSAA	9 cut(s)	446, 567, 693, 769, 1151, 1376, 1461, 1536, 1767
AjnI	CCWGG	3 cut(s)	748, 1397, 2030
AjuI	GAANNNNNNNTTGG	4 cut(s)	539, 571, 1729, 1761
AluBI	AGCT	8 cut(s)	100, 997, 1091, 1190, 1205, 1368, 1657, 1983
AluI	AGCT	8 cut(s)	100, 997, 1091, 1190, 1205, 1368, 1657, 1983
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	7 cut(s)	42, 48, 544, 672, 1169, 1246, 1443
AlwI	GGATC	5 cut(s)	25, 467, 936, 968, 1020
Aor13HI	TCCGGA	1 cut(s)	778
AoxI	GGCC	3 cut(s)	126, 1477, 2043
ApeKI	GCWGC	1 cut(s)	2026
ApoI	RAATTY	4 cut(s)	371, 782, 1739, 2012
AspLEI	GCGC	4 cut(s)	369, 457, 484, 733
AspS9I	GGNCC	1 cut(s)	1759
AsuHPI	GGTGA	7 cut(s)	23, 107, 476, 598, 1645, 1718, 2071
AsuII	TTCGAA	1 cut(s)	915
AvaII	GGWCC	1 cut(s)	1759
BaeGI	GKGCMC	2 cut(s)	944, 1397
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	3 cut(s)	454, 1394, 1468
BanII	GRGCYC	1 cut(s)	102
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
BbsI	GAAGAC	2 cut(s)	840, 1416
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	2038
BccI	CCATC	7 cut(s)	46, 113, 698, 1118, 1581, 1860, 1982
BceAI	ACGGC	2 cut(s)	1368, 2058
BcgI	CGANNNNNNTGC	2 cut(s)	1464, 1498
BciT130I	CCWGG	3 cut(s)	750, 1399, 2032
BclI	TGATCA	3 cut(s)	133, 1708, 2061
BcoDI	GTCTC	7 cut(s)	42, 48, 544, 672, 1169, 1246, 1443
BfaI	CTAG	2 cut(s)	342, 1043
BfoI	RGCGCY	2 cut(s)	458, 734
BglII	AGATCT	1 cut(s)	1927
BisI	GCNGC	1 cut(s)	2027
BlsI	GCNGC	1 cut(s)	2028
Bme1390I	CCNGG	3 cut(s)	750, 1399, 2032
Bme18I	GGWCC	1 cut(s)	1759
BmgT120I	GGNCC	1 cut(s)	1759
BmiI	GGNNCC	4 cut(s)	79, 456, 1396, 1470
BmrFI	CCNGG	3 cut(s)	750, 1399, 2032
BmsI	GCATC	5 cut(s)	529, 799, 888, 1118, 1447
BpiI	GAAGAC	2 cut(s)	840, 1416
Bpu14I	TTCGAA	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	1001
BsaBI	GATNNNNATC	1 cut(s)	813
BsaHI	GRCGYC	1 cut(s)	455
BsaJI	CCNNGG	5 cut(s)	243, 749, 1969, 2021, 2030
BsaWI	WCCGGW	1 cut(s)	778
BsaXI	ACNNNNNCTCC	2 cut(s)	1176, 1206
Bsc4I	CCNNNNNNNGG	4 cut(s)	249, 363, 674, 951
Bse118I	RCCGGY	1 cut(s)	2045
Bse1I	ACTGG	4 cut(s)	588, 1159, 1279, 1962
Bse3DI	GCAATG	1 cut(s)	1686
Bse8I	GATNNNNATC	1 cut(s)	813
BseAI	TCCGGA	1 cut(s)	778
BseBI	CCWGG	3 cut(s)	750, 1399, 2032
BseDI	CCNNGG	5 cut(s)	243, 749, 1969, 2021, 2030
BseJI	GATNNNNATC	1 cut(s)	813
BseLI	CCNNNNNNNGG	4 cut(s)	249, 363, 674, 951
BseMI	GCAATG	1 cut(s)	1686
BseMII	CTCAG	3 cut(s)	1212, 1526, 1998
BseNI	ACTGG	4 cut(s)	588, 1159, 1279, 1962
BseRI	GAGGAG	5 cut(s)	161, 765, 773, 1461, 1672
BseSI	GKGCMC	2 cut(s)	944, 1397
BseX3I	CGGCCG	1 cut(s)	2043
BseXI	GCAGC	1 cut(s)	2038
Bsh1285I	CGRYCG	1 cut(s)	2046
BshFI	GGCC	3 cut(s)	128, 1479, 2045
BshNI	GGYRCC	3 cut(s)	454, 1394, 1468
BsiEI	CGRYCG	1 cut(s)	2046
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	779, 2046
BslFI	GGGAC	1 cut(s)	1263
BslI	CCNNNNNNNGG	4 cut(s)	249, 363, 674, 951
BsmAI	GTCTC	7 cut(s)	42, 48, 544, 672, 1169, 1246, 1443
BsmBI	CGTCTC	2 cut(s)	544, 672
BsmFI	GGGAC	1 cut(s)	1263
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	3 cut(s)	128, 1479, 2045
Bsp119I	TTCGAA	1 cut(s)	915
Bsp1286I	GDGCHC	3 cut(s)	102, 944, 1397
Bsp13I	TCCGGA	1 cut(s)	778
Bsp1407I	TGTACA	1 cut(s)	1897
BspACI	CCGC	1 cut(s)	838
BspANI	GGCC	3 cut(s)	128, 1479, 2045
BspCNI	CTCAG	3 cut(s)	1213, 1525, 1997
BspEI	TCCGGA	1 cut(s)	778
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	4 cut(s)	79, 456, 1396, 1470
BspPI	GGATC	5 cut(s)	25, 467, 936, 968, 1020
BspT104I	TTCGAA	1 cut(s)	915
BspT107I	GGYRCC	3 cut(s)	454, 1394, 1468
BsrDI	GCAATG	1 cut(s)	1686
BsrFI	RCCGGY	1 cut(s)	2045
BsrGI	TGTACA	1 cut(s)	1897
BsrI	ACTGG	4 cut(s)	588, 1159, 1279, 1962
BssAI	RCCGGY	1 cut(s)	2045
BssECI	CCNNGG	5 cut(s)	243, 749, 1969, 2021, 2030
BssNI	GRCGYC	1 cut(s)	455
BssT1I	CCWWGG	2 cut(s)	243, 2021
Bst2UI	CCWGG	3 cut(s)	750, 1399, 2032
Bst4CI	ACNGT	7 cut(s)	464, 528, 1069, 1132, 1420, 1465, 1897
Bst6I	CTCTTC	4 cut(s)	63, 584, 639, 795
BstACI	GRCGYC	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	1897
BstBI	TTCGAA	1 cut(s)	915
BstC8I	GCNNGC	4 cut(s)	1473, 1477, 1554, 1981
BstDEI	CTNAG	5 cut(s)	25, 843, 1221, 1512, 1984
BstH2I	RGCGCY	2 cut(s)	458, 734
BstHHI	GCGC	4 cut(s)	369, 457, 484, 733
BstMAI	GTCTC	7 cut(s)	42, 48, 544, 672, 1169, 1246, 1443
BstMCI	CGRYCG	1 cut(s)	2046
BstMWI	GCNNNNNNNGC	1 cut(s)	745
BstNI	CCWGG	3 cut(s)	750, 1399, 2032
BstNSI	RCATGY	1 cut(s)	1881
BstSCI	CCNGG	3 cut(s)	748, 1397, 2030
BstSLI	GKGCMC	2 cut(s)	944, 1397
BstV1I	GCAGC	1 cut(s)	2038
BstV2I	GAAGAC	2 cut(s)	840, 1416
BstX2I	RGATCY	4 cut(s)	17, 928, 1012, 1927
BstYI	RGATCY	4 cut(s)	17, 928, 1012, 1927
BstZI	CGGCCG	1 cut(s)	2043
BsuRI	GGCC	3 cut(s)	128, 1479, 2045
BtsI	GCAGTG	1 cut(s)	1106
BtsIMutI	CAGTG	6 cut(s)	524, 1106, 1272, 1434, 1893, 1955
Cac8I	GCNNGC	4 cut(s)	1473, 1477, 1554, 1981
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	4 cut(s)	369, 457, 484, 733
Cfr10I	RCCGGY	1 cut(s)	2045
Cfr13I	GGNCC	1 cut(s)	1759
CsiI	ACCWGGT	1 cut(s)	1397
Csp6I	GTAC	3 cut(s)	1259, 1295, 1898
CspCI	CAANNNNNGTGG	2 cut(s)	1528, 1563
CviAII	CATG	8 cut(s)	137, 173, 1388, 1712, 1878, 1910, 1915, 1976
CviQI	GTAC	3 cut(s)	1259, 1295, 1898
DdeI	CTNAG	5 cut(s)	25, 843, 1221, 1512, 1984
DinI	GGCGCC	1 cut(s)	456
DraI	TTTAAA	1 cut(s)	502
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	2 cut(s)	126, 2043
EagI	CGGCCG	1 cut(s)	2043
Eam1104I	CTCTTC	4 cut(s)	63, 584, 639, 795
EarI	CTCTTC	4 cut(s)	63, 584, 639, 795
Ecl136II	GAGCTC	1 cut(s)	100
EclXI	CGGCCG	1 cut(s)	2043
Eco130I	CCWWGG	2 cut(s)	243, 2021
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	1759
Eco52I	CGGCCG	1 cut(s)	2043
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	5 cut(s)	222, 1007, 1077, 1410, 1548
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	3 cut(s)	748, 1397, 2030
EcoT14I	CCWWGG	2 cut(s)	243, 2021
EcoT22I	ATGCAT	1 cut(s)	1503
EcoT38I	GRGCYC	1 cut(s)	102
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
ErhI	CCWWGG	2 cut(s)	243, 2021
Esp3I	CGTCTC	2 cut(s)	544, 672
FaeI	CATG	8 cut(s)	140, 176, 1391, 1715, 1881, 1913, 1918, 1979
FalI	AAGNNNNNCTT	6 cut(s)	896, 928, 1245, 1277, 1302, 1334
FaqI	GGGAC	1 cut(s)	1263
FatI	CATG	8 cut(s)	136, 172, 1387, 1711, 1877, 1909, 1914, 1975
FauNDI	CATATG	3 cut(s)	478, 889, 1198
FbaI	TGATCA	3 cut(s)	133, 1708, 2061
FblI	GTMKAC	1 cut(s)	1520
Fnu4HI	GCNGC	1 cut(s)	2027
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	2027
FspBI	CTAG	2 cut(s)	342, 1043
GlaI	GCGC	4 cut(s)	368, 456, 483, 732
GluI	GCNGC	1 cut(s)	2027
HaeII	RGCGCY	2 cut(s)	458, 734
HaeIII	GGCC	3 cut(s)	128, 1479, 2045
HapII	CCGG	2 cut(s)	779, 2046
HhaI	GCGC	4 cut(s)	369, 457, 484, 733
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	8 cut(s)	140, 176, 1391, 1715, 1881, 1913, 1918, 1979
Hin6I	GCGC	4 cut(s)	367, 455, 482, 731
HinP1I	GCGC	4 cut(s)	367, 455, 482, 731
HindIII	AAGCTT	2 cut(s)	1089, 1655
HpaII	CCGG	2 cut(s)	779, 2046
HphI	GGTGA	7 cut(s)	23, 107, 476, 598, 1645, 1718, 2071
Hpy166II	GTNNAC	4 cut(s)	581, 864, 1521, 2040
Hpy188III	TCNNGA	9 cut(s)	165, 173, 257, 779, 977, 1043, 1220, 1363, 1376
Hpy8I	GTNNAC	4 cut(s)	581, 864, 1521, 2040
HpyCH4III	ACNGT	7 cut(s)	464, 528, 1069, 1132, 1420, 1465, 1897
HpyCH4IV	ACGT	1 cut(s)	961
HpyCH4V	TGCA	9 cut(s)	887, 1109, 1501, 1556, 1691, 1874, 1893, 1979, 2010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	745
HpyF3I	CTNAG	5 cut(s)	25, 843, 1221, 1512, 1984
HpySE526I	ACGT	1 cut(s)	961
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	8 cut(s)	140, 176, 1391, 1715, 1881, 1913, 1918, 1979
HspAI	GCGC	4 cut(s)	367, 455, 482, 731
KasI	GGCGCC	1 cut(s)	454
Kpn2I	TCCGGA	1 cut(s)	778
Ksp22I	TGATCA	3 cut(s)	133, 1708, 2061
LmnI	GCTCC	3 cut(s)	220, 1589, 1725
Lsp1109I	GCAGC	1 cut(s)	2038
LweI	GCATC	5 cut(s)	529, 799, 888, 1118, 1447
MabI	ACCWGGT	1 cut(s)	1397
MaeI	CTAG	2 cut(s)	342, 1043
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	6 cut(s)	406, 464, 1055, 1069, 1192, 1558
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	4 cut(s)	17, 928, 1012, 1927
MhlI	GDGCHC	3 cut(s)	102, 944, 1397
MlsI	TGGCCA	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	128
Mly113I	GGCGCC	1 cut(s)	455
MlyI	GAGTC	5 cut(s)	50, 506, 677, 770, 2048
Mox20I	TGGCCA	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	1503
MroI	TCCGGA	1 cut(s)	778
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	9 cut(s)	300, 501, 620, 624, 821, 903, 1403, 1413, 1932
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	2 cut(s)	779, 2046
MspR9I	CCNGG	3 cut(s)	750, 1399, 2032
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	3 cut(s)	750, 1399, 2032
MwoI	GCNNNNNNNGC	1 cut(s)	745
NarI	GGCGCC	1 cut(s)	455
NdeI	CATATG	3 cut(s)	478, 889, 1198
NlaIII	CATG	8 cut(s)	140, 176, 1391, 1715, 1881, 1913, 1918, 1979
NlaIV	GGNNCC	4 cut(s)	79, 456, 1396, 1470
NmuCI	GTSAC	4 cut(s)	406, 464, 1055, 1192
NsiI	ATGCAT	1 cut(s)	1503
NspI	RCATGY	1 cut(s)	1881
NspV	TTCGAA	1 cut(s)	915
PacI	TTAATTAA	1 cut(s)	624
PagI	TCATGA	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	958
PctI	GAATGC	1 cut(s)	901
PfeI	GAWTC	6 cut(s)	194, 353, 555, 980, 1210, 1372
PflFI	GACNNNGTC	1 cut(s)	1420
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	2028
PleI	GAGTC	5 cut(s)	50, 506, 677, 769, 2048
PluTI	GGCGCC	1 cut(s)	458
PpsI	GAGTC	5 cut(s)	50, 506, 677, 769, 2048
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	3 cut(s)	748, 1397, 2030
PspGI	CCWGG	3 cut(s)	748, 1397, 2030
PspN4I	GGNNCC	4 cut(s)	79, 456, 1396, 1470
PspPI	GGNCC	1 cut(s)	1759
PsuI	RGATCY	4 cut(s)	17, 928, 1012, 1927
PsyI	GACNNNGTC	1 cut(s)	1420
RsaI	GTAC	3 cut(s)	1260, 1296, 1899
RsaNI	GTAC	3 cut(s)	1259, 1295, 1898
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	9 cut(s)	300, 501, 620, 624, 821, 903, 1403, 1413, 1932
SatI	GCNGC	1 cut(s)	2027
Sau96I	GGNCC	1 cut(s)	1759
SchI	GAGTC	5 cut(s)	50, 506, 677, 770, 2048
ScrFI	CCNGG	3 cut(s)	750, 1399, 2032
SduI	GDGCHC	3 cut(s)	102, 944, 1397
SexAI	ACCWGGT	1 cut(s)	1397
SfaNI	GCATC	5 cut(s)	529, 799, 888, 1118, 1447
SfoI	GGCGCC	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	915
SinI	GGWCC	1 cut(s)	1759
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	1016
SmoI	CTYRAG	1 cut(s)	1016
SsiI	CCGC	1 cut(s)	838
SspDI	GGCGCC	1 cut(s)	454
SspI	AATATT	1 cut(s)	970
SspMI	CTAG	2 cut(s)	342, 1043
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	748, 1397, 2030
StyI	CCWWGG	2 cut(s)	243, 2021
TaaI	ACNGT	7 cut(s)	464, 528, 1069, 1132, 1420, 1465, 1897
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	3 cut(s)	183, 915, 1484
TatI	WGTACW	3 cut(s)	1258, 1294, 1897
TfiI	GAWTC	6 cut(s)	194, 353, 555, 980, 1210, 1372
Tru1I	TTAA	9 cut(s)	300, 501, 620, 624, 821, 903, 1403, 1413, 1932
Tru9I	TTAA	9 cut(s)	300, 501, 620, 624, 821, 903, 1403, 1413, 1932
TscAI	CASTG	6 cut(s)	531, 1106, 1279, 1434, 1900, 1962
TseFI	GTSAC	4 cut(s)	406, 464, 1055, 1192
TseI	GCWGC	1 cut(s)	2026
Tsp45I	GTSAC	4 cut(s)	406, 464, 1055, 1192
TspGWI	ACGGA	3 cut(s)	710, 1219, 1854
TspRI	CASTG	6 cut(s)	531, 1106, 1279, 1434, 1900, 1962
Tth111I	GACNNNGTC	1 cut(s)	1420
Van91I	CCANNNNNTGG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	1759
XapI	RAATTY	4 cut(s)	371, 782, 1739, 2012
XbaI	TCTAGA	1 cut(s)	1042
XceI	RCATGY	1 cut(s)	1881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2028
XmiI	GTMKAC	1 cut(s)	1520
XspI	CTAG	2 cut(s)	342, 1043
Zsp2I	ATGCAT	1 cut(s)	1503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.