Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Reverse (-)

6395402 .. 6397420

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTTTCAGCTTAAAATAGACCCTGAATCTCTCAAGCCCAAGCTACCGAGCCGAACTGAACTTGAGCCTTACCCTGTAGCATGTTATCTTGAGTATAGAGGCCACAAGGATGCAGTTACATCAGTTTCTGTAGAAGCTTCAGGGCAGTGGATTATTGGTGAAGCCGTCAAATATGTGGCTTGGAATCCTTATCCTGAGCATTCTATAGTGGCTGTCTCGGTGGGACAAGACGTACTTCTTTTGAACACTGGTTGTGGGACTGAAGAAGTACAGAAAAGAACTAAAGAACTTCTCTCTGTTGAGATGCCTATGCCCGACGACTCTGGTCAGTCTATATTTATACACAAGCTCTCTAAGAAGTTTAACCAGACACTTTCATTCAAGTTGCATGGGGTTGCAGTTACTTCAGTTTTCCATCCAACACGGTCTTTCTTCTTCATTTCAACAAAAAAGATTGTTAGTGTTTATAATCTGTGGTACTCGAATTGTACTCTGATATATCTGGATTTTACTGTTAATGCAAGTGATCATATAATTGTGGGAAGCAGAGAAGGAAAATTATGTTGGTTCGACATGGAACTTTCATCTAAACCTTACAAAACTCTCAAGGGGATAATACTTTCGTGCAAACTGCTGGCTTATTTCACTTCCAGTCATTTGCCTTGTTACTGTGGATGCATATATTTTTCTGACATTTCGAAACTTATCAGGTTGCTTCAGAAGGACATCAACAATGTATCTTTCCATCGTTCATACCCACTGTTTGCAACATGCTCTCATAACTGCACTGCATATGTTTTTCAAGGAATGGTTTATTCAGATCTTAACCAGAACCCTCTTATTGTTCCATTGGAAATAGTCCGAGGTCATACAAGCTCAAATGGGAGAGGTGCGACCTATAGCTTTCTCTATTTTATGTCCTGTTGGGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

312

Amino Acids

35.22

Weight (kDa)

8.39

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
AcuI	CTGAAG	4 cut(s)	123, 282, 390, 701
AfaI	GTAC	4 cut(s)	234, 270, 479, 490
AgsI	TTSAA	4 cut(s)	244, 382, 444, 803
AjuI	GAANNNNNNNTTGG	2 cut(s)	547, 579
AluBI	AGCT	6 cut(s)	10, 43, 137, 349, 876, 903
AluI	AGCT	6 cut(s)	10, 43, 137, 349, 876, 903
Alw26I	GTCTC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	170
AsuII	TTCGAA	1 cut(s)	698
BccI	CCATC	2 cut(s)	423, 753
BceAI	ACGGC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	220
BfmI	CTRYAG	4 cut(s)	75, 129, 204, 898
BglII	AGATCT	1 cut(s)	820
BmsI	GCATC	3 cut(s)	100, 294, 665
BoxI	GACNNNNGTC	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	698
BpuEI	CTTGAG	4 cut(s)	17, 83, 110, 590
BsaJI	CCNNGG	1 cut(s)	862
Bse1I	ACTGG	2 cut(s)	253, 651
BseDI	CCNNGG	1 cut(s)	862
BseGI	GGATG	3 cut(s)	115, 415, 680
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	253, 651
BsgI	GTGCAG	1 cut(s)	769
BshFI	GGCC	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	237, 271
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	2 cut(s)	237, 271
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	102
Bsp119I	TTCGAA	1 cut(s)	698
Bsp143I	GATC	2 cut(s)	526, 820
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	253, 651
BssECI	CCNNGG	1 cut(s)	862
BssMI	GATC	2 cut(s)	526, 820
Bst4CI	ACNGT	4 cut(s)	426, 514, 671, 762
BstBI	TTCGAA	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	2 cut(s)	195, 354
BstF5I	GGATG	3 cut(s)	115, 415, 680
BstKTI	GATC	2 cut(s)	529, 823
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	526, 820
BstNSI	RCATGY	2 cut(s)	84, 774
BstPAI	GACNNNNGTC	1 cut(s)	324
BstSFI	CTRYAG	4 cut(s)	75, 129, 204, 898
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	115, 415, 680
BtsI	GCAGTG	2 cut(s)	152, 786
BtsIMutI	CAGTG	4 cut(s)	152, 246, 758, 786
Cac8I	GCNNGC	1 cut(s)	636
CaiI	CAGNNNCTG	1 cut(s)	128
Csp6I	GTAC	4 cut(s)	233, 269, 478, 489
CviAII	CATG	4 cut(s)	81, 389, 574, 771
CviQI	GTAC	4 cut(s)	233, 269, 478, 489
DdeI	CTNAG	2 cut(s)	195, 354
DpnI	GATC	2 cut(s)	528, 822
DpnII	GATC	2 cut(s)	526, 820
Eco57I	CTGAAG	4 cut(s)	123, 282, 390, 701
EcoT22I	ATGCAT	1 cut(s)	680
FaeI	CATG	4 cut(s)	84, 392, 577, 774
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	2 cut(s)	237, 271
FatI	CATG	4 cut(s)	80, 388, 573, 770
FauNDI	CATATG	1 cut(s)	793
FbaI	TGATCA	1 cut(s)	526
FokI	GGATG	3 cut(s)	122, 402, 687
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	84, 392, 577, 774
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	3 cut(s)	26, 184, 320
HphI	GGTGA	1 cut(s)	170
Hpy188I	TCNGA	5 cut(s)	495, 691, 720, 820, 863
Hpy188III	TCNNGA	3 cut(s)	89, 194, 503
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	545, 715
HpyCH4III	ACNGT	4 cut(s)	426, 514, 671, 762
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	9 cut(s)	113, 388, 398, 521, 627, 678, 767, 786, 791
HpyF3I	CTNAG	2 cut(s)	195, 354
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	84, 392, 577, 774
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	526, 820
LweI	GCATC	3 cut(s)	100, 294, 665
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	115, 400, 665
MalI	GATC	2 cut(s)	528, 822
MboI	GATC	2 cut(s)	526, 820
MboII	GAAGA	3 cut(s)	275, 424, 427
MflI	RGATCY	1 cut(s)	820
MluCI	AATT	3 cut(s)	484, 534, 557
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	4 cut(s)	92, 846, 857, 881
Mph1103I	ATGCAT	1 cut(s)	680
MseI	TTAA	5 cut(s)	12, 363, 516, 825, 934
MslI	CAYNNNNRTG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	199
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	2 cut(s)	526, 820
NlaIII	CATG	4 cut(s)	84, 392, 577, 774
NsiI	ATGCAT	1 cut(s)	680
NspI	RCATGY	2 cut(s)	84, 774
NspV	TTCGAA	1 cut(s)	698
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	26, 184
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PshAI	GACNNNNGTC	1 cut(s)	324
PsiI	TTATAA	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	820
RsaI	GTAC	4 cut(s)	234, 270, 479, 490
RsaNI	GTAC	4 cut(s)	233, 269, 478, 489
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	5 cut(s)	12, 363, 516, 825, 934
Sau3AI	GATC	2 cut(s)	526, 820
SchI	GAGTC	1 cut(s)	314
SfaNI	GCATC	3 cut(s)	100, 294, 665
SfcI	CTRYAG	4 cut(s)	75, 129, 204, 898
SfuI	TTCGAA	1 cut(s)	698
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	4 cut(s)	32, 62, 89, 605
SmoI	CTYRAG	4 cut(s)	32, 62, 89, 605
Sse9I	AATT	3 cut(s)	484, 534, 557
TaaI	ACNGT	4 cut(s)	426, 514, 671, 762
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	482, 570, 698
TasI	AATT	3 cut(s)	484, 534, 557
TatI	WGTACW	2 cut(s)	268, 488
TfiI	GAWTC	2 cut(s)	26, 184
Tru1I	TTAA	5 cut(s)	12, 363, 516, 825, 934
Tru9I	TTAA	5 cut(s)	12, 363, 516, 825, 934
TscAI	CASTG	4 cut(s)	152, 253, 765, 793
TspDTI	ATGAA	4 cut(s)	366, 427, 573, 741
TspRI	CASTG	4 cut(s)	152, 253, 765, 793
XceI	RCATGY	2 cut(s)	84, 774
Zsp2I	ATGCAT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.