Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Forward (+)

67617021 .. 67626266

Gene Structure 9246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21644

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2016 bp

ATGTCTGGTGGTGAAGGATCTGACTTAGAGGATTATCCATCAATCAGAGACAGAGACTCGGAAGATGAAGAGAGTGGTTCCTCTGAAAATGAGGGTGAGCTCTACACCAGCAGAAATGATGGTTTGGCCATTGATCATGGTAATGAGGAGGAAAGTGATAGTTCTGGACTTCATGAAGCAGTCGAGGAAAGTGATTCATCTGAAGATGAGGTTGCTCCCCGAAATACAATTGGTGCTGTTCCCTTGGAGTGGTATCGGGATGAGAAACATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAGAAGGAAAGAGAAGATAAATTACAATCCTTTCTTGCTAGTGCTGATGATTCCAAAAATTGGCGCAAATTTTTGGATGAATACAATGACGAGGAAGTAGAAGTGACAAAAGAAGATATGAAAACTATAAATAGATTGCTTGAAGGAAAGGCGCCACACGGTGACTTTGATCCATATGCGCCTTATGTTGATTGGTTTAAATGGGATGACTCAAAGCATCCACTGTCAAATGCCCCTGAACCCAAGAGACGATTCATTCCTTCAAAATCTGAAAGTAAACTGGTGAAGAGGTTAGTATTAGCAATTCGGAAGGGTTTAATTAAGCCTACAAAGGATGAAGAAGAGGAAGAAGAAAGTGTTTATCCCTTGTGGGGAGACGACTCTAATTCAACGGAAAAGGATGGTAGCCATTTATCTTACATTCCAGCGCCAAAGCCAAAATTGCCAGGGTATGAGGAGTCCTTCAATCCTCCTCCGGAATTCATCCCAACACAAGAAGAGATTGATGCTTATCAGTTAATGTATGAGGAAGACCGCCCTAAGTTTATACCGAAAAGGTTTACATCTATGAGAAGCATCCCTGCATATGAGAATGCTATTAAGGAGTGCTTCGAAAGATGTTTGGATCTATACTTGTGCCCCAGAGTTCGGAAGAAACGTATCAATATTGATCCTGAATCTCTGAAGCCCAAGCTACCAAGCCGAAAGGATCTCAAGCCTTATCCTGTGAAATGTTATCTAGAGTATAGAGGTCACAAAGACACAGTTACATCAGTTTCCACAGAAGCTTCAGGGCAGTGGATTGCATCAGGTTCATCGGATGGAACTGTGCGTATTTGGGAGGTTGAAACTGGTAGATGTCTCAAACTCTGGGAGATTGGAGAAGCTGTCACATATGTAGCTTGGAATCCCAATCCTGAGTATTCCGTATTGGCTGTCTCTGTACTGTGTCTTCAGTGGAATGGCATCGTAGAGGAGACTACTTTTCAACGGTGGTGCCAGCAGATATCCTTTTTAGTGTCAAAATATCATATATGCTCTCTCTCTCTCTCCCTCTCTCTCATATCACTCACTCACTTTTTTTGCATGATCCAATTAGTCATCTCCTTGCATTTTCTTGACCTAGCTTTACGCCAATCGAAATCAATTTTTATGCATAGGCTCTCTCAGAAGTCTACCCAGACATTTTCAATCAAGTTGGGTGGGCTTGCAGTTACTTCAGTTTTCCATCCTGTTCGCTCCCACATCTTCATTTCTACAAAGAAAACTATTCGCCAATATGATTTGGTGAAGGGAAAGCAAATCAGAAAGCTTGATACAGGACTAAAAGAAATCTCCTCCATTGCAGCTCATCCTTCTGGTGATCATGTAATTGTGGGGAGCAGAGAAGGAAAATTTTGTTGGTTTGATATGGACCTTTCAACCAAAAAACCTTACCTTATTCGCCAGTGGCATAAGAAGGACATCAACAATGTGTCTATCCATCGTTTATATCCGTTGTTTGCAACATGCTCTGATGATTGCGCTGTACAAGTTTCTCATGGCATGGTTTATTCAGATCTTAACCAGAACCCTCTTATAGTTCCACTGGAAATACTCCGAGGTCATGCAAGCTCAGATGGGAGAGGTGTAATGGATTGCAAATTCCACCCAAGGCAGCCCTGGTTGTTCACGGCCGGTGCTGACTCGGTGATCAGACTTTACTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

671

Amino Acids

76.75

Weight (kDa)

5.66

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	85 - 343	3.2e-100	BOP1NT (NUC169) domain
WD40_CDC20-Fz	PF24807	343 - 407	5.3e-06	CDC20/Fizzy WD40 domain
WD40	PF00400	345 - 381	8.8e-10	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	346 - 412	5e-12	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	348 - 412	9.5e-11	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	348 - 399	1.8e-09	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	349 - 391	1.2e-07	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	349 - 413	4e-06	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	349 - 409	1.4e-06	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	350 - 411	1.1e-08	EIF3I
WD40_CDC20-Fz	PF24807	483 - 618	3.1e-07	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	510 - 669	2e-10	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	518 - 669	3.1e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	519 - 613	1e-06	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	523 - 669	2.5e-08	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	454, 1299
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	1478
AccIII	TCCGGA	1 cut(s)	778
AciI	CCGC	1 cut(s)	838
AclWI	GGATC	6 cut(s)	25, 467, 936, 968, 1020, 1387
AcoI	YGGCCR	2 cut(s)	126, 1977
AcsI	RAATTY	4 cut(s)	371, 782, 1697, 1946
AcuI	CTGAAG	5 cut(s)	222, 1007, 1077, 1241, 1506
AcyI	GRCGYC	1 cut(s)	455
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	1248, 1833
AfiI	CCNNNNNNNGG	4 cut(s)	249, 363, 674, 951
AgsI	TTSAA	8 cut(s)	446, 567, 693, 769, 1151, 1292, 1494, 1725
AjnI	CCWGG	2 cut(s)	748, 1964
AjuI	GAANNNNNNNTTGG	4 cut(s)	539, 571, 1687, 1719
AluBI	AGCT	9 cut(s)	100, 997, 1091, 1190, 1205, 1430, 1615, 1652, 1917
AluI	AGCT	9 cut(s)	100, 997, 1091, 1190, 1205, 1430, 1615, 1652, 1917
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	7 cut(s)	42, 48, 544, 672, 1169, 1246, 1274
AlwI	GGATC	6 cut(s)	25, 467, 936, 968, 1020, 1387
Aor13HI	TCCGGA	1 cut(s)	778
AoxI	GGCC	2 cut(s)	126, 1977
ApeKI	GCWGC	2 cut(s)	1649, 1960
ApoI	RAATTY	4 cut(s)	371, 782, 1697, 1946
AspLEI	GCGC	5 cut(s)	369, 457, 484, 733, 1829
AspS9I	GGNCC	1 cut(s)	1717
AsuHPI	GGTGA	7 cut(s)	23, 107, 476, 598, 1603, 1676, 2005
AsuII	TTCGAA	1 cut(s)	915
AvaII	GGWCC	1 cut(s)	1717
BaeGI	GKGCMC	1 cut(s)	944
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	2 cut(s)	454, 1299
BanII	GRGCYC	1 cut(s)	102
BarI	GAAGNNNNNNTAC	4 cut(s)	309, 341, 1239, 1271
BbsI	GAAGAC	2 cut(s)	840, 1247
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	1661, 1972
BccI	CCATC	7 cut(s)	46, 113, 698, 1118, 1539, 1794, 1916
BceAI	ACGGC	1 cut(s)	1992
BciT130I	CCWGG	2 cut(s)	750, 1966
BclI	TGATCA	3 cut(s)	133, 1666, 1995
BcoDI	GTCTC	7 cut(s)	42, 48, 544, 672, 1169, 1246, 1274
BfaI	CTAG	3 cut(s)	342, 1043, 1427
BfoI	RGCGCY	2 cut(s)	458, 734
BglII	AGATCT	1 cut(s)	1861
BisI	GCNGC	2 cut(s)	1650, 1961
BlsI	GCNGC	2 cut(s)	1651, 1962
Bme1390I	CCNGG	2 cut(s)	750, 1966
Bme18I	GGWCC	1 cut(s)	1717
BmgT120I	GGNCC	1 cut(s)	1717
BmiI	GGNNCC	3 cut(s)	79, 456, 1301
BmrFI	CCNGG	2 cut(s)	750, 1966
BmsI	GCATC	5 cut(s)	529, 799, 888, 1118, 1278
BpiI	GAAGAC	2 cut(s)	840, 1247
Bpu14I	TTCGAA	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	1001
BsaBI	GATNNNNATC	1 cut(s)	813
BsaHI	GRCGYC	1 cut(s)	455
BsaJI	CCNNGG	5 cut(s)	243, 749, 1903, 1955, 1964
BsaWI	WCCGGW	1 cut(s)	778
BsaXI	ACNNNNNCTCC	2 cut(s)	1176, 1206
Bsc4I	CCNNNNNNNGG	4 cut(s)	249, 363, 674, 951
Bse118I	RCCGGY	1 cut(s)	1979
Bse1I	ACTGG	4 cut(s)	588, 1159, 1750, 1896
Bse3DI	GCAATG	1 cut(s)	1644
Bse8I	GATNNNNATC	1 cut(s)	813
BseAI	TCCGGA	1 cut(s)	778
BseBI	CCWGG	2 cut(s)	750, 1966
BseDI	CCNNGG	5 cut(s)	243, 749, 1903, 1955, 1964
BseJI	GATNNNNATC	1 cut(s)	813
BseLI	CCNNNNNNNGG	4 cut(s)	249, 363, 674, 951
BseMI	GCAATG	1 cut(s)	1644
BseMII	CTCAG	3 cut(s)	1212, 1484, 1932
BseNI	ACTGG	4 cut(s)	588, 1159, 1750, 1896
BseRI	GAGGAG	5 cut(s)	161, 765, 773, 1292, 1630
BseSI	GKGCMC	1 cut(s)	944
BseX3I	CGGCCG	1 cut(s)	1977
BseXI	GCAGC	2 cut(s)	1661, 1972
Bsh1285I	CGRYCG	1 cut(s)	1980
BshFI	GGCC	2 cut(s)	128, 1979
BshNI	GGYRCC	2 cut(s)	454, 1299
BsiEI	CGRYCG	1 cut(s)	1980
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	779, 1980
BslI	CCNNNNNNNGG	4 cut(s)	249, 363, 674, 951
BsmAI	GTCTC	7 cut(s)	42, 48, 544, 672, 1169, 1246, 1274
BsmBI	CGTCTC	2 cut(s)	544, 672
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	2 cut(s)	128, 1979
Bsp119I	TTCGAA	1 cut(s)	915
Bsp1286I	GDGCHC	2 cut(s)	102, 944
Bsp13I	TCCGGA	1 cut(s)	778
Bsp1407I	TGTACA	1 cut(s)	1831
BspACI	CCGC	1 cut(s)	838
BspANI	GGCC	2 cut(s)	128, 1979
BspCNI	CTCAG	3 cut(s)	1213, 1483, 1931
BspEI	TCCGGA	1 cut(s)	778
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	79, 456, 1301
BspPI	GGATC	6 cut(s)	25, 467, 936, 968, 1020, 1387
BspT104I	TTCGAA	1 cut(s)	915
BspT107I	GGYRCC	2 cut(s)	454, 1299
BsrDI	GCAATG	1 cut(s)	1644
BsrFI	RCCGGY	1 cut(s)	1979
BsrGI	TGTACA	1 cut(s)	1831
BsrI	ACTGG	4 cut(s)	588, 1159, 1750, 1896
BssAI	RCCGGY	1 cut(s)	1979
BssECI	CCNNGG	5 cut(s)	243, 749, 1903, 1955, 1964
BssNI	GRCGYC	1 cut(s)	455
BssT1I	CCWWGG	2 cut(s)	243, 1955
Bst2UI	CCWGG	2 cut(s)	750, 1966
Bst4CI	ACNGT	6 cut(s)	464, 528, 1069, 1132, 1251, 1296
Bst6I	CTCTTC	4 cut(s)	63, 584, 639, 795
BstACI	GRCGYC	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	1831
BstBI	TTCGAA	1 cut(s)	915
BstC8I	GCNNGC	3 cut(s)	1304, 1512, 1915
BstDEI	CTNAG	5 cut(s)	25, 843, 1221, 1470, 1918
BstH2I	RGCGCY	2 cut(s)	458, 734
BstHHI	GCGC	5 cut(s)	369, 457, 484, 733, 1829
BstMAI	GTCTC	7 cut(s)	42, 48, 544, 672, 1169, 1246, 1274
BstMCI	CGRYCG	1 cut(s)	1980
BstMWI	GCNNNNNNNGC	1 cut(s)	745
BstNI	CCWGG	2 cut(s)	750, 1966
BstNSI	RCATGY	1 cut(s)	1815
BstSCI	CCNGG	2 cut(s)	748, 1964
BstSLI	GKGCMC	1 cut(s)	944
BstV1I	GCAGC	2 cut(s)	1661, 1972
BstV2I	GAAGAC	2 cut(s)	840, 1247
BstX2I	RGATCY	4 cut(s)	17, 928, 1012, 1861
BstYI	RGATCY	4 cut(s)	17, 928, 1012, 1861
BstZI	CGGCCG	1 cut(s)	1977
BsuRI	GGCC	2 cut(s)	128, 1979
BtsI	GCAGTG	1 cut(s)	1106
BtsIMutI	CAGTG	5 cut(s)	524, 1106, 1265, 1757, 1889
Cac8I	GCNNGC	3 cut(s)	1304, 1512, 1915
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	5 cut(s)	369, 457, 484, 733, 1829
Cfr10I	RCCGGY	1 cut(s)	1979
Cfr13I	GGNCC	1 cut(s)	1717
Csp6I	GTAC	2 cut(s)	1247, 1832
CspCI	CAANNNNNGTGG	2 cut(s)	1486, 1521
CviAII	CATG	8 cut(s)	137, 173, 1390, 1670, 1812, 1844, 1849, 1910
CviQI	GTAC	2 cut(s)	1247, 1832
DdeI	CTNAG	5 cut(s)	25, 843, 1221, 1470, 1918
DinI	GGCGCC	1 cut(s)	456
DraI	TTTAAA	1 cut(s)	502
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	2 cut(s)	126, 1977
EagI	CGGCCG	1 cut(s)	1977
Eam1104I	CTCTTC	4 cut(s)	63, 584, 639, 795
EarI	CTCTTC	4 cut(s)	63, 584, 639, 795
Ecl136II	GAGCTC	1 cut(s)	100
EclXI	CGGCCG	1 cut(s)	1977
Eco130I	CCWWGG	2 cut(s)	243, 1955
Eco24I	GRGCYC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	1311
Eco47I	GGWCC	1 cut(s)	1717
Eco52I	CGGCCG	1 cut(s)	1977
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	5 cut(s)	222, 1007, 1077, 1241, 1506
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	2 cut(s)	748, 1964
EcoRV	GATATC	1 cut(s)	1311
EcoT14I	CCWWGG	2 cut(s)	243, 1955
EcoT22I	ATGCAT	1 cut(s)	1461
EcoT38I	GRGCYC	1 cut(s)	102
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
ErhI	CCWWGG	2 cut(s)	243, 1955
Esp3I	CGTCTC	2 cut(s)	544, 672
FaeI	CATG	8 cut(s)	140, 176, 1393, 1673, 1815, 1847, 1852, 1913
FalI	AAGNNNNNCTT	2 cut(s)	896, 928
FatI	CATG	8 cut(s)	136, 172, 1389, 1669, 1811, 1843, 1848, 1909
FauNDI	CATATG	3 cut(s)	478, 889, 1198
FbaI	TGATCA	3 cut(s)	133, 1666, 1995
FblI	GTMKAC	1 cut(s)	1478
Fnu4HI	GCNGC	2 cut(s)	1650, 1961
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	1650, 1961
FspBI	CTAG	3 cut(s)	342, 1043, 1427
GlaI	GCGC	5 cut(s)	368, 456, 483, 732, 1828
GluI	GCNGC	2 cut(s)	1650, 1961
HaeII	RGCGCY	2 cut(s)	458, 734
HaeIII	GGCC	2 cut(s)	128, 1979
HapII	CCGG	2 cut(s)	779, 1980
HhaI	GCGC	5 cut(s)	369, 457, 484, 733, 1829
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	8 cut(s)	140, 176, 1393, 1673, 1815, 1847, 1852, 1913
Hin6I	GCGC	5 cut(s)	367, 455, 482, 731, 1827
HinP1I	GCGC	5 cut(s)	367, 455, 482, 731, 1827
HindIII	AAGCTT	2 cut(s)	1089, 1613
HpaII	CCGG	2 cut(s)	779, 1980
HphI	GGTGA	7 cut(s)	23, 107, 476, 598, 1603, 1676, 2005
Hpy166II	GTNNAC	4 cut(s)	581, 864, 1479, 1974
Hpy188III	TCNNGA	8 cut(s)	165, 173, 257, 779, 977, 1043, 1220, 1421
Hpy8I	GTNNAC	4 cut(s)	581, 864, 1479, 1974
HpyCH4III	ACNGT	6 cut(s)	464, 528, 1069, 1132, 1251, 1296
HpyCH4IV	ACGT	1 cut(s)	961
HpyF10VI	GCNNNNNNNGC	1 cut(s)	745
HpyF3I	CTNAG	5 cut(s)	25, 843, 1221, 1470, 1918
HpySE526I	ACGT	1 cut(s)	961
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	8 cut(s)	140, 176, 1393, 1673, 1815, 1847, 1852, 1913
HspAI	GCGC	5 cut(s)	367, 455, 482, 731, 1827
KasI	GGCGCC	1 cut(s)	454
Kpn2I	TCCGGA	1 cut(s)	778
Ksp22I	TGATCA	3 cut(s)	133, 1666, 1995
LmnI	GCTCC	3 cut(s)	220, 1547, 1683
Lsp1109I	GCAGC	2 cut(s)	1661, 1972
LweI	GCATC	5 cut(s)	529, 799, 888, 1118, 1278
MaeI	CTAG	3 cut(s)	342, 1043, 1427
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	6 cut(s)	406, 464, 1055, 1069, 1192, 1516
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	4 cut(s)	17, 928, 1012, 1861
MhlI	GDGCHC	2 cut(s)	102, 944
MlsI	TGGCCA	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	128
Mly113I	GGCGCC	1 cut(s)	455
MlyI	GAGTC	5 cut(s)	50, 506, 677, 770, 1982
Mox20I	TGGCCA	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	1461
MroI	TCCGGA	1 cut(s)	778
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	7 cut(s)	300, 501, 620, 624, 821, 903, 1866
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	2 cut(s)	779, 1980
MspR9I	CCNGG	2 cut(s)	750, 1966
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	2 cut(s)	750, 1966
MwoI	GCNNNNNNNGC	1 cut(s)	745
NarI	GGCGCC	1 cut(s)	455
NdeI	CATATG	3 cut(s)	478, 889, 1198
NlaIII	CATG	8 cut(s)	140, 176, 1393, 1673, 1815, 1847, 1852, 1913
NlaIV	GGNNCC	3 cut(s)	79, 456, 1301
NmuCI	GTSAC	4 cut(s)	406, 464, 1055, 1192
NsiI	ATGCAT	1 cut(s)	1461
NspI	RCATGY	1 cut(s)	1815
NspV	TTCGAA	1 cut(s)	915
PacI	TTAATTAA	1 cut(s)	624
PagI	TCATGA	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	958
PctI	GAATGC	1 cut(s)	901
PfeI	GAWTC	5 cut(s)	194, 353, 555, 980, 1210
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	1651, 1962
PleI	GAGTC	5 cut(s)	50, 506, 677, 769, 1982
PluTI	GGCGCC	1 cut(s)	458
PpsI	GAGTC	5 cut(s)	50, 506, 677, 769, 1982
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	748, 1964
PspGI	CCWGG	2 cut(s)	748, 1964
PspN4I	GGNNCC	3 cut(s)	79, 456, 1301
PspPI	GGNCC	1 cut(s)	1717
PsuI	RGATCY	4 cut(s)	17, 928, 1012, 1861
RsaI	GTAC	2 cut(s)	1248, 1833
RsaNI	GTAC	2 cut(s)	1247, 1832
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	7 cut(s)	300, 501, 620, 624, 821, 903, 1866
SatI	GCNGC	2 cut(s)	1650, 1961
Sau96I	GGNCC	1 cut(s)	1717
SchI	GAGTC	5 cut(s)	50, 506, 677, 770, 1982
ScrFI	CCNGG	2 cut(s)	750, 1966
SduI	GDGCHC	2 cut(s)	102, 944
SfaNI	GCATC	5 cut(s)	529, 799, 888, 1118, 1278
SfoI	GGCGCC	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	915
SinI	GGWCC	1 cut(s)	1717
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	1016
SmoI	CTYRAG	1 cut(s)	1016
SsiI	CCGC	1 cut(s)	838
SspDI	GGCGCC	1 cut(s)	454
SspI	AATATT	1 cut(s)	970
SspMI	CTAG	3 cut(s)	342, 1043, 1427
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	748, 1964
StyI	CCWWGG	2 cut(s)	243, 1955
TaaI	ACNGT	6 cut(s)	464, 528, 1069, 1132, 1251, 1296
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	3 cut(s)	183, 915, 1442
TatI	WGTACW	2 cut(s)	1246, 1831
TfiI	GAWTC	5 cut(s)	194, 353, 555, 980, 1210
Tru1I	TTAA	7 cut(s)	300, 501, 620, 624, 821, 903, 1866
Tru9I	TTAA	7 cut(s)	300, 501, 620, 624, 821, 903, 1866
TscAI	CASTG	5 cut(s)	531, 1106, 1265, 1757, 1896
TseFI	GTSAC	4 cut(s)	406, 464, 1055, 1192
TseI	GCWGC	2 cut(s)	1649, 1960
Tsp45I	GTSAC	4 cut(s)	406, 464, 1055, 1192
TspGWI	ACGGA	3 cut(s)	710, 1219, 1788
TspRI	CASTG	5 cut(s)	531, 1106, 1265, 1757, 1896
Van91I	CCANNNNNTGG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	1717
XapI	RAATTY	4 cut(s)	371, 782, 1697, 1946
XbaI	TCTAGA	1 cut(s)	1042
XceI	RCATGY	1 cut(s)	1815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1962
XmiI	GTMKAC	1 cut(s)	1478
XspI	CTAG	3 cut(s)	342, 1043, 1427
Zsp2I	ATGCAT	1 cut(s)	1461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.