Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000821.1

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Forward (+)

87499 .. 91114

Gene Structure 3616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000821.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

atgtctggtggtgaaggatctgacttagaggattatccatcaatcagagacacagactcggaagatgaagagagtggtttttctgaagatgagggtgtgctcaacaccagtagaaatgatggtttggccattgatcatggtaatgaggaggaaagtgatagttctggacttcatgaagtagtcgaggaaagtgattcatctgaagatgaggttgctcctcgaaatacaattggtgctgttcccttggagtggtatcgggatgagaaacatattggttatgatcttagagggaagaagattaaaaagaaggaaagagaagataaattacaatcctttcttgctagcgctgatgattccaaaaattggcgcaaattttttgatgaatacaatgacgaggaagtagaagtgacaaaagaagatatgaaatctataaatagattgcttgaaggaaaggcgccacacagtgactttgatccatatgcgccttatgttgattggtttaaatgggatgactcaaagcatccactgtcaaatgctcctgaacccaagagacgattcattccttcaaaatctgaaagtaaactggtgaagaggttagtattagcaattcggaagggtttaattaagcctagaaaggatgaagaagaagaagaagaggaaagtgtttatcccttgtggggagacgactctaattcaacggaaaaggatggtagccatttatcttacattccagcaccaaagccaaaattgccagggtatgaggagtccttcaatcctcctccagaattcatcccatcacaagaagagattgatgcttatcagttaatgtatgaggaagaccgccctaagtttataccaaaaaggtttacatctatgagaagcatccctgcatatgagaatgctattaaggagtgctttgaaagatgtttggatctatacttgtgccccagagttcggaagaaacgtatcaatattgatcctgaatctctgaagcccaagttaccaagccgaaaggatctcaagccttatcctgtgaaatgttatctagagtatagaggtcacaaagacacagttacatcagtttccacagaagtttcagggcagtggattgcatcaggttcattggatggaactgtgcgtatttgggaggttgaaactggtagatgtctcaaactctgggagattggagaagctgtcacatatgtagcttggaatcccaatcctgagtattctgtattggctgtctctgtgggacaagatgtacttattctcaacactggttttgggaatgaagaagtacagaaaaaaactaaagaacttctttcggctgaaacacctaccacagcagatgacacggctaccttcgtgagctggattcaagatgaaacacatgagggcaccaggttaagacattttaagactgtgtcttcagtggaatggcatcgtagaggagactacttttcaacggtgaagtctacccagacattttcaattaagttgggtgggcttgcagttacttcagttttccatcctgttcgctcccacatcttcatttctacgaagaaaactattcgccaatatgatttggtgaagggaaagcaaatcagaaagcttgatacaggactgaaagaaatctcctccattgcagttcatccttctggtgatcatgtaattgtggggagcagagaaggaaaattttgttggtttgatatggacctttcaaccaaaaaaccttaccttattcgccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

583

Amino Acids

66.72

Weight (kDa)

5.25

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	454, 1397
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	1475
AciI	CCGC	1 cut(s)	841
AclWI	GGATC	5 cut(s)	25, 467, 939, 971, 1023
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	371, 785, 1694
AcuI	CTGAAG	5 cut(s)	105, 222, 1010, 1413, 1503
AcyI	GRCGYC	1 cut(s)	455
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	1263, 1299
AfeI	AGCGCT	1 cut(s)	346
AfiI	CCNNNNNNNGG	4 cut(s)	249, 363, 677, 954
AjnI	CCWGG	2 cut(s)	751, 1400
AjuI	GAANNNNNNNTTGG	4 cut(s)	539, 571, 1684, 1716
AluBI	AGCT	4 cut(s)	1193, 1208, 1371, 1612
AluI	AGCT	4 cut(s)	1193, 1208, 1371, 1612
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	6 cut(s)	42, 544, 675, 1172, 1249, 1446
AlwI	GGATC	5 cut(s)	25, 467, 939, 971, 1023
Aor51HI	AGCGCT	1 cut(s)	346
AoxI	GGCC	1 cut(s)	126
ApoI	RAATTY	3 cut(s)	371, 785, 1694
AspLEI	GCGC	4 cut(s)	347, 369, 457, 484
AspS9I	GGNCC	1 cut(s)	1714
AsuHPI	GGTGA	5 cut(s)	23, 598, 1480, 1600, 1673
AsuNHI	GCTAGC	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	1714
BaeGI	GKGCMC	2 cut(s)	947, 1400
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	2 cut(s)	454, 1397
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
BbsI	GAAGAC	2 cut(s)	843, 1419
Bbv12I	GWGCWC	1 cut(s)	102
BccI	CCATC	6 cut(s)	46, 113, 701, 802, 1121, 1536
BceAI	ACGGC	1 cut(s)	1371
BciT130I	CCWGG	2 cut(s)	753, 1402
BclI	TGATCA	2 cut(s)	133, 1663
BcoDI	GTCTC	6 cut(s)	42, 544, 675, 1172, 1249, 1446
BfaI	CTAG	3 cut(s)	342, 630, 1046
BfoI	RGCGCY	2 cut(s)	348, 458
Bme1390I	CCNGG	2 cut(s)	753, 1402
Bme18I	GGWCC	1 cut(s)	1714
BmgT120I	GGNCC	1 cut(s)	1714
BmiI	GGNNCC	2 cut(s)	456, 1399
BmrFI	CCNGG	2 cut(s)	753, 1402
BmsI	GCATC	5 cut(s)	529, 802, 891, 1121, 1450
BmtI	GCTAGC	1 cut(s)	345
BpiI	GAAGAC	2 cut(s)	843, 1419
BpmI	CTGGAG	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	1004
BsaBI	GATNNNNATC	1 cut(s)	816
BsaHI	GRCGYC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	243, 752
BsaXI	ACNNNNNCTCC	2 cut(s)	1179, 1209
Bsc4I	CCNNNNNNNGG	4 cut(s)	249, 363, 677, 954
Bse1I	ACTGG	5 cut(s)	108, 588, 1162, 1282, 1747
Bse3DI	GCAATG	1 cut(s)	1641
Bse8I	GATNNNNATC	1 cut(s)	816
BseBI	CCWGG	2 cut(s)	753, 1402
BseDI	CCNNGG	2 cut(s)	243, 752
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	4 cut(s)	249, 363, 677, 954
BseMI	GCAATG	1 cut(s)	1641
BseMII	CTCAG	1 cut(s)	1215
BseNI	ACTGG	5 cut(s)	108, 588, 1162, 1282, 1747
BseRI	GAGGAG	6 cut(s)	161, 207, 768, 776, 1464, 1627
BseSI	GKGCMC	2 cut(s)	947, 1400
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	2 cut(s)	454, 1397
BsiHKAI	GWGCWC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	1266
BslI	CCNNNNNNNGG	4 cut(s)	249, 363, 677, 954
BsmAI	GTCTC	6 cut(s)	42, 544, 675, 1172, 1249, 1446
BsmBI	CGTCTC	2 cut(s)	544, 675
BsmFI	GGGAC	1 cut(s)	1266
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	102, 947, 1400
Bsp143I	GATC	8 cut(s)	17, 133, 280, 472, 931, 976, 1015, 1663
BspACI	CCGC	1 cut(s)	841
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	1216
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	456, 1399
BspOI	GCTAGC	1 cut(s)	345
BspPI	GGATC	5 cut(s)	25, 467, 939, 971, 1023
BspT107I	GGYRCC	2 cut(s)	454, 1397
BsrDI	GCAATG	1 cut(s)	1641
BsrI	ACTGG	5 cut(s)	108, 588, 1162, 1282, 1747
BssECI	CCNNGG	2 cut(s)	243, 752
BssMI	GATC	8 cut(s)	17, 133, 280, 472, 931, 976, 1015, 1663
BssNI	GRCGYC	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	753, 1402
Bst4CI	ACNGT	6 cut(s)	464, 528, 1072, 1135, 1423, 1468
Bst6I	CTCTTC	4 cut(s)	63, 584, 648, 798
BstACI	GRCGYC	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	343, 1509
BstDEI	CTNAG	4 cut(s)	25, 284, 846, 1224
BstH2I	RGCGCY	2 cut(s)	348, 458
BstHHI	GCGC	4 cut(s)	347, 369, 457, 484
BstKTI	GATC	8 cut(s)	20, 136, 283, 475, 934, 979, 1018, 1666
BstMAI	GTCTC	6 cut(s)	42, 544, 675, 1172, 1249, 1446
BstMBI	GATC	8 cut(s)	17, 133, 280, 472, 931, 976, 1015, 1663
BstMWI	GCNNNNNNNGC	1 cut(s)	748
BstNI	CCWGG	2 cut(s)	753, 1402
BstSCI	CCNGG	2 cut(s)	751, 1400
BstSLI	GKGCMC	2 cut(s)	947, 1400
BstV2I	GAAGAC	2 cut(s)	843, 1419
BstX2I	RGATCY	3 cut(s)	17, 931, 1015
BstYI	RGATCY	3 cut(s)	17, 931, 1015
BsuRI	GGCC	1 cut(s)	128
BtsI	GCAGTG	1 cut(s)	1109
BtsIMutI	CAGTG	5 cut(s)	469, 524, 1109, 1275, 1437
Cac8I	GCNNGC	2 cut(s)	343, 1509
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	4 cut(s)	347, 369, 457, 484
Cfr13I	GGNCC	1 cut(s)	1714
CsiI	ACCWGGT	1 cut(s)	1400
Csp6I	GTAC	2 cut(s)	1262, 1298
CviAII	CATG	4 cut(s)	137, 173, 1391, 1667
CviQI	GTAC	2 cut(s)	1262, 1298
DdeI	CTNAG	4 cut(s)	25, 284, 846, 1224
DinI	GGCGCC	1 cut(s)	456
DpnI	GATC	8 cut(s)	19, 135, 282, 474, 933, 978, 1017, 1665
DpnII	GATC	8 cut(s)	17, 133, 280, 472, 931, 976, 1015, 1663
DraI	TTTAAA	1 cut(s)	502
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	4 cut(s)	63, 584, 648, 798
EarI	CTCTTC	4 cut(s)	63, 584, 648, 798
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	1714
Eco47III	AGCGCT	1 cut(s)	346
Eco57I	CTGAAG	5 cut(s)	105, 222, 1010, 1413, 1503
EcoRI	GAATTC	1 cut(s)	785
EcoRII	CCWGG	2 cut(s)	751, 1400
EcoT14I	CCWWGG	1 cut(s)	243
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	2 cut(s)	544, 675
FaeI	CATG	4 cut(s)	140, 176, 1394, 1670
FalI	AAGNNNNNCTT	6 cut(s)	899, 931, 1248, 1280, 1305, 1337
FaqI	GGGAC	1 cut(s)	1266
FatI	CATG	4 cut(s)	136, 172, 1390, 1666
FauNDI	CATATG	3 cut(s)	478, 892, 1201
FbaI	TGATCA	2 cut(s)	133, 1663
FblI	GTMKAC	1 cut(s)	1475
FspBI	CTAG	3 cut(s)	342, 630, 1046
GlaI	GCGC	4 cut(s)	346, 368, 456, 483
GsuI	CTGGAG	1 cut(s)	765
HaeII	RGCGCY	2 cut(s)	348, 458
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	4 cut(s)	347, 369, 457, 484
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	4 cut(s)	140, 176, 1394, 1670
Hin6I	GCGC	4 cut(s)	345, 367, 455, 482
HinP1I	GCGC	4 cut(s)	345, 367, 455, 482
HindIII	AAGCTT	1 cut(s)	1610
HphI	GGTGA	5 cut(s)	23, 598, 1480, 1600, 1673
Hpy166II	GTNNAC	3 cut(s)	581, 867, 1476
Hpy8I	GTNNAC	3 cut(s)	581, 867, 1476
HpyCH4III	ACNGT	6 cut(s)	464, 528, 1072, 1135, 1423, 1468
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	4 cut(s)	890, 1112, 1511, 1646
HpyF10VI	GCNNNNNNNGC	1 cut(s)	748
HpyF3I	CTNAG	4 cut(s)	25, 284, 846, 1224
HpySE526I	ACGT	1 cut(s)	964
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	4 cut(s)	140, 176, 1394, 1670
HspAI	GCGC	4 cut(s)	345, 367, 455, 482
KasI	GGCGCC	1 cut(s)	454
Ksp22I	TGATCA	2 cut(s)	133, 1663
Kzo9I	GATC	8 cut(s)	17, 133, 280, 472, 931, 976, 1015, 1663
LmnI	GCTCC	4 cut(s)	220, 541, 1544, 1680
LweI	GCATC	5 cut(s)	529, 802, 891, 1121, 1450
MabI	ACCWGGT	1 cut(s)	1400
MaeI	CTAG	3 cut(s)	342, 630, 1046
MaeII	ACGT	1 cut(s)	964
MaeIII	GTNAC	7 cut(s)	406, 464, 999, 1058, 1072, 1195, 1513
MalI	GATC	8 cut(s)	19, 135, 282, 474, 933, 978, 1017, 1665
MboI	GATC	8 cut(s)	17, 133, 280, 472, 931, 976, 1015, 1663
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	3 cut(s)	17, 931, 1015
MhlI	GDGCHC	3 cut(s)	102, 947, 1400
MlsI	TGGCCA	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	128
Mly113I	GGCGCC	1 cut(s)	455
MlyI	GAGTC	4 cut(s)	50, 506, 680, 773
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	9 cut(s)	300, 501, 620, 624, 824, 906, 1406, 1416, 1494
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	753, 1402
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	2 cut(s)	753, 1402
MwoI	GCNNNNNNNGC	1 cut(s)	748
NarI	GGCGCC	1 cut(s)	455
NdeI	CATATG	3 cut(s)	478, 892, 1201
NdeII	GATC	8 cut(s)	17, 133, 280, 472, 931, 976, 1015, 1663
NheI	GCTAGC	1 cut(s)	341
NlaIII	CATG	4 cut(s)	140, 176, 1394, 1670
NlaIV	GGNNCC	2 cut(s)	456, 1399
NmuCI	GTSAC	4 cut(s)	406, 464, 1058, 1195
PacI	TTAATTAA	1 cut(s)	624
PagI	TCATGA	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	961
PctI	GAATGC	1 cut(s)	904
PfeI	GAWTC	6 cut(s)	194, 353, 555, 983, 1213, 1375
PflFI	GACNNNGTC	1 cut(s)	1423
PflMI	CCANNNNNTGG	1 cut(s)	363
PleI	GAGTC	4 cut(s)	50, 506, 680, 772
PluTI	GGCGCC	1 cut(s)	458
PpsI	GAGTC	4 cut(s)	50, 506, 680, 772
Psp6I	CCWGG	2 cut(s)	751, 1400
PspGI	CCWGG	2 cut(s)	751, 1400
PspN4I	GGNNCC	2 cut(s)	456, 1399
PspPI	GGNCC	1 cut(s)	1714
PsuI	RGATCY	3 cut(s)	17, 931, 1015
PsyI	GACNNNGTC	1 cut(s)	1423
RsaI	GTAC	2 cut(s)	1263, 1299
RsaNI	GTAC	2 cut(s)	1262, 1298
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	9 cut(s)	300, 501, 620, 624, 824, 906, 1406, 1416, 1494
Sau3AI	GATC	8 cut(s)	17, 133, 280, 472, 931, 976, 1015, 1663
Sau96I	GGNCC	1 cut(s)	1714
SchI	GAGTC	4 cut(s)	50, 506, 680, 773
ScrFI	CCNGG	2 cut(s)	753, 1402
SduI	GDGCHC	3 cut(s)	102, 947, 1400
SexAI	ACCWGGT	1 cut(s)	1400
SfaNI	GCATC	5 cut(s)	529, 802, 891, 1121, 1450
SfoI	GGCGCC	1 cut(s)	456
SinI	GGWCC	1 cut(s)	1714
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	1019
SmoI	CTYRAG	1 cut(s)	1019
SsiI	CCGC	1 cut(s)	841
SspDI	GGCGCC	1 cut(s)	454
SspI	AATATT	1 cut(s)	973
SspMI	CTAG	3 cut(s)	342, 630, 1046
StyD4I	CCNGG	2 cut(s)	751, 1400
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	6 cut(s)	464, 528, 1072, 1135, 1423, 1468
TaiI	ACGT	1 cut(s)	967
TaqI	TCGA	2 cut(s)	183, 220
TatI	WGTACW	2 cut(s)	1261, 1297
TfiI	GAWTC	6 cut(s)	194, 353, 555, 983, 1213, 1375
Tru1I	TTAA	9 cut(s)	300, 501, 620, 624, 824, 906, 1406, 1416, 1494
Tru9I	TTAA	9 cut(s)	300, 501, 620, 624, 824, 906, 1406, 1416, 1494
TscAI	CASTG	5 cut(s)	469, 531, 1109, 1282, 1437
TseFI	GTSAC	4 cut(s)	406, 464, 1058, 1195
Tsp45I	GTSAC	4 cut(s)	406, 464, 1058, 1195
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	5 cut(s)	469, 531, 1109, 1282, 1437
Tth111I	GACNNNGTC	1 cut(s)	1423
Van91I	CCANNNNNTGG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	1714
XapI	RAATTY	3 cut(s)	371, 785, 1694
XbaI	TCTAGA	1 cut(s)	1045
XmiI	GTMKAC	1 cut(s)	1475
XspI	CTAG	3 cut(s)	342, 630, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.