Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Forward (+)

23982633 .. 23987575

Gene Structure 4943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG243600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGATATGTCTGGTGGTGAAGGATCTGACTTAGAGGATTATCCATCAATCAGAGACACAGACTCGGAAGATGAAGAGAGTGGTTTTTCTGAAGATGAGGGTGTGCTCAACACCAGCAGAAATGATGGTTTGGCCATTGATCATGGTAATGAGGAGGAAAGTGATAGTTCTGGACTTCATGAAGTAGTGGACGAAAGTGATTCATCTGAAGATGAGGTTGCTCCTCGAAATACAATTGGTGCTGTTCCCTTGGAGTGGTATCGGGATGAGAAACATATTGGTTATGACCTTACAGGGAAGAAGATTAAAAAGAAGGAAAGAGAAGATAAATTACAATCCTTTCTTGCTAGCGCTGATGATTCCAAAAATTGGCGCAAATTTTTGGATGAATACAATGACGAGGAAGTAGAAGTGACAAAAGAAGATATGAAAACTATAAATAGATTGCTTGAAGGAAAGGCGCCACACGGTGACTTTGATCCATATGCACCTTATGTTGATTGGTTTAAATGGGATGACTCAAAGCATCCACTGTCAAATGCCCCTGAACCCAAGAGACGATTCATTCCTTCAAAATCTGAAAGTAAACTGGTGAAGAGGTTAGTATTAGCAATTCGGAAGGGTTTAATTAAGCCTAGAAAGGATGAAGAAGAAGAAGAAGAAGAAAGTGTTTATCCCTTGTGGGGAGATGACTCTAATTCAACGGAAAAGGATGGTAGCCATTTATCTTACATTCCAGCGCCAAAGCCAAAATTGCCAGGGTATGAGGAGTCCTTCAATCCTCCTCCAGAATTCATCCCATCACAAGAAGAGATTGATGCTTATCAGTTAATGTATGAGGAAGACCGCCCTAAGTTTATACCGAAAAGGTTTACATCTATGAGAAGCATCCCTGCATATGAGAATGCTATTAAGGAGTGCTTCGAAAGATGTTTGGATCTATACTTGTGCCCCAGAGTTCGGAAGAAACGTATCAATATTGATCCTGAATCTCTGAAGCCCAAGCTACCAAGCCGAAAGGATCTCAAGCCTTATCCTGTGAAATGTTATCTAGAGTATAGAGGTCACAAAGACACAGTTACATCAGTTTCCACAGAAGTTTCAGGGCAGTGGATTGCATCAGGTTCATTGGATGGAACTGTGCGAATTTGGGAGGTTGAAACTGGTAGATGTCTCAAACTCTGGGAGATTGGAGAAGCTGTCACATATGTAGCTTGGAATCCCAATCCTGAGTATTCCGTATTGGCTGTCTCTGTGGGACAAGATGTACTTATTCTCAACACTGGTTTTGGGAATGAAGAAGTACAGAAAAAAACTAAAGAACTTCTTTCGGCTGAAACACCTACCACACCAGATGACACGGCTACCTTCGTGAGCTGGATTCAAGATGAAACACACGAGGGCACCAGGTTAAGACATTTTAAGACTGTGTCTTCAGTGGAATGGCATCGTAGAGGAGACTACTTTTCAACGGTGGTGCCAGCAGATATCCTTTTTACTCTACGCCAATCAAAATCAATTTTTATGCATAGGCTCTCTCAGAAGTCTACCCAGACATTTTCAATCAAGTTGGGTGGGCTAGCAGTTACTTCAGTTTTCCATCCTGTTCGCTCCCACATCTTCATTTCTACGAAGAAAACTATTCGCCAATATGATTTGGTGAAGGGAAAGCAAATCAGAAAGCTTGATACAGGACTAAAAGAAATCTCCTCCATTGCAGTTCATCCTTCTGGTGATCATGTAATTGTGGGGAGCAGAGAAGGAAAATTTTGTTGGTTTGATATGGACCTTTCAACCAAAAAACCTTACCTTATTCGCCAGTGGCATAAGAAGGACATCAACAATGTGTCTATCCATCATTTATATCCGTTGTTTGCAACATGCTCTGATGATTGCACTGTACAAGTTTCTCATGGCATGGTTTATTCAGATCTTAACCAGAACCCTCTTATAGTTCCACTGGAAATACTCCGAGGTCATGCAAGCTCAGATGGGAGAGGTGTAATGGATTGCAAATTCCACCCAAGGCAGCCCTGGTTGTTCACGGCCGGTGCTGACTCGGTGATCAGACTTTACTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

694

Amino Acids

79.27

Weight (kDa)

5.41

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	87 - 346	8.2e-100	BOP1NT (NUC169) domain
WD40	PF00400	348 - 384	2e-09	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	349 - 428	8.4e-13	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	351 - 485	6.3e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	351 - 424	2.4e-07	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	351 - 434	3e-10	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	352 - 413	1.3e-06	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	353 - 433	1.9e-08	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	353 - 428	7e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	470 - 692	2.1e-06	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	475 - 692	6.4e-12	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	508 - 641	1.2e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	541 - 692	1.5e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	542 - 636	2.3e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	546 - 692	7.8e-09	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	460, 1403, 1477
AccB7I	CCANNNNNTGG	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	1547
AciI	CCGC	1 cut(s)	847
AclWI	GGATC	5 cut(s)	31, 473, 945, 977, 1029
AcoI	YGGCCR	2 cut(s)	132, 2046
AcsI	RAATTY	5 cut(s)	377, 791, 1146, 1766, 2015
AcuI	CTGAAG	5 cut(s)	111, 228, 1016, 1419, 1575
AcyI	GRCGYC	1 cut(s)	461
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	1269, 1305, 1902
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	4 cut(s)	255, 369, 683, 960
AgsI	TTSAA	9 cut(s)	452, 573, 702, 778, 1160, 1385, 1470, 1563, 1794
AjnI	CCWGG	3 cut(s)	757, 1406, 2033
AjuI	GAANNNNNNNTTGG	4 cut(s)	545, 577, 1756, 1788
AluBI	AGCT	6 cut(s)	1006, 1199, 1214, 1377, 1684, 1986
AluI	AGCT	6 cut(s)	1006, 1199, 1214, 1377, 1684, 1986
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	5 cut(s)	48, 550, 1178, 1255, 1452
AlwI	GGATC	5 cut(s)	31, 473, 945, 977, 1029
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	2 cut(s)	132, 2046
ApeKI	GCWGC	1 cut(s)	2029
ApoI	RAATTY	5 cut(s)	377, 791, 1146, 1766, 2015
AspLEI	GCGC	4 cut(s)	353, 375, 463, 742
AspS9I	GGNCC	1 cut(s)	1786
AsuHPI	GGTGA	6 cut(s)	29, 482, 604, 1672, 1745, 2074
AsuII	TTCGAA	1 cut(s)	924
AsuNHI	GCTAGC	2 cut(s)	347, 1579
AvaII	GGWCC	1 cut(s)	1786
BaeGI	GKGCMC	2 cut(s)	953, 1406
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	3 cut(s)	460, 1403, 1477
BarI	GAAGNNNNNNTAC	2 cut(s)	315, 347
BauI	CACGAG	1 cut(s)	1397
BbsI	GAAGAC	2 cut(s)	849, 1425
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	2041
BccI	CCATC	8 cut(s)	52, 119, 707, 808, 1127, 1608, 1863, 1985
BceAI	ACGGC	2 cut(s)	1377, 2061
BciT130I	CCWGG	3 cut(s)	759, 1408, 2035
BclI	TGATCA	3 cut(s)	139, 1735, 2064
BcoDI	GTCTC	5 cut(s)	48, 550, 1178, 1255, 1452
BfaI	CTAG	4 cut(s)	348, 636, 1052, 1580
BfoI	RGCGCY	3 cut(s)	354, 464, 743
BglII	AGATCT	1 cut(s)	1930
BisI	GCNGC	1 cut(s)	2030
BlsI	GCNGC	1 cut(s)	2031
Bme1390I	CCNGG	3 cut(s)	759, 1408, 2035
Bme18I	GGWCC	1 cut(s)	1786
BmgT120I	GGNCC	1 cut(s)	1786
BmiI	GGNNCC	3 cut(s)	462, 1405, 1479
BmrFI	CCNGG	3 cut(s)	759, 1408, 2035
BmsI	GCATC	5 cut(s)	535, 808, 897, 1127, 1456
BmtI	GCTAGC	2 cut(s)	351, 1583
BpiI	GAAGAC	2 cut(s)	849, 1425
BpmI	CTGGAG	1 cut(s)	771
Bpu14I	TTCGAA	1 cut(s)	924
BpuEI	CTTGAG	1 cut(s)	1010
BsaBI	GATNNNNATC	1 cut(s)	822
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	5 cut(s)	249, 758, 1972, 2024, 2033
BsaXI	ACNNNNNCTCC	2 cut(s)	1185, 1215
Bsc4I	CCNNNNNNNGG	4 cut(s)	255, 369, 683, 960
Bse118I	RCCGGY	1 cut(s)	2048
Bse1I	ACTGG	5 cut(s)	594, 1168, 1288, 1819, 1965
Bse3DI	GCAATG	1 cut(s)	1713
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	3 cut(s)	759, 1408, 2035
BseDI	CCNNGG	5 cut(s)	249, 758, 1972, 2024, 2033
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	4 cut(s)	255, 369, 683, 960
BseMI	GCAATG	1 cut(s)	1713
BseMII	CTCAG	3 cut(s)	1221, 1553, 2001
BseNI	ACTGG	5 cut(s)	594, 1168, 1288, 1819, 1965
BseRI	GAGGAG	6 cut(s)	167, 213, 774, 782, 1470, 1699
BseSI	GKGCMC	2 cut(s)	953, 1406
BseX3I	CGGCCG	1 cut(s)	2046
BseXI	GCAGC	1 cut(s)	2041
Bsh1285I	CGRYCG	1 cut(s)	2049
BshFI	GGCC	2 cut(s)	134, 2048
BshNI	GGYRCC	3 cut(s)	460, 1403, 1477
BsiEI	CGRYCG	1 cut(s)	2049
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	2049
BslFI	GGGAC	1 cut(s)	1272
BslI	CCNNNNNNNGG	4 cut(s)	255, 369, 683, 960
BsmAI	GTCTC	5 cut(s)	48, 550, 1178, 1255, 1452
BsmBI	CGTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	1272
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	2 cut(s)	134, 2048
Bsp119I	TTCGAA	1 cut(s)	924
Bsp1286I	GDGCHC	3 cut(s)	108, 953, 1406
Bsp1407I	TGTACA	1 cut(s)	1900
Bsp143I	GATC	9 cut(s)	23, 139, 478, 937, 982, 1021, 1735, 1930, 2064
BspACI	CCGC	1 cut(s)	847
BspANI	GGCC	2 cut(s)	134, 2048
BspCNI	CTCAG	3 cut(s)	1222, 1552, 2000
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	462, 1405, 1479
BspOI	GCTAGC	2 cut(s)	351, 1583
BspPI	GGATC	5 cut(s)	31, 473, 945, 977, 1029
BspT104I	TTCGAA	1 cut(s)	924
BspT107I	GGYRCC	3 cut(s)	460, 1403, 1477
BsrDI	GCAATG	1 cut(s)	1713
BsrFI	RCCGGY	1 cut(s)	2048
BsrGI	TGTACA	1 cut(s)	1900
BsrI	ACTGG	5 cut(s)	594, 1168, 1288, 1819, 1965
BssAI	RCCGGY	1 cut(s)	2048
BssECI	CCNNGG	5 cut(s)	249, 758, 1972, 2024, 2033
BssMI	GATC	9 cut(s)	23, 139, 478, 937, 982, 1021, 1735, 1930, 2064
BssNI	GRCGYC	1 cut(s)	461
BssSI	CACGAG	1 cut(s)	1397
BssT1I	CCWWGG	2 cut(s)	249, 2024
Bst2BI	CACGAG	1 cut(s)	1397
Bst2UI	CCWGG	3 cut(s)	759, 1408, 2035
Bst4CI	ACNGT	7 cut(s)	470, 534, 1078, 1141, 1429, 1474, 1900
Bst6I	CTCTTC	3 cut(s)	69, 590, 804
BstACI	GRCGYC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	1900
BstBI	TTCGAA	1 cut(s)	924
BstC8I	GCNNGC	4 cut(s)	349, 1482, 1581, 1984
BstDEI	CTNAG	5 cut(s)	31, 852, 1230, 1539, 1987
BstH2I	RGCGCY	3 cut(s)	354, 464, 743
BstHHI	GCGC	4 cut(s)	353, 375, 463, 742
BstKTI	GATC	9 cut(s)	26, 142, 481, 940, 985, 1024, 1738, 1933, 2067
BstMAI	GTCTC	5 cut(s)	48, 550, 1178, 1255, 1452
BstMBI	GATC	9 cut(s)	23, 139, 478, 937, 982, 1021, 1735, 1930, 2064
BstMCI	CGRYCG	1 cut(s)	2049
BstMWI	GCNNNNNNNGC	1 cut(s)	754
BstNI	CCWGG	3 cut(s)	759, 1408, 2035
BstNSI	RCATGY	1 cut(s)	1884
BstSCI	CCNGG	3 cut(s)	757, 1406, 2033
BstSLI	GKGCMC	2 cut(s)	953, 1406
BstV1I	GCAGC	1 cut(s)	2041
BstV2I	GAAGAC	2 cut(s)	849, 1425
BstX2I	RGATCY	4 cut(s)	23, 937, 1021, 1930
BstYI	RGATCY	4 cut(s)	23, 937, 1021, 1930
BstZI	CGGCCG	1 cut(s)	2046
BsuRI	GGCC	2 cut(s)	134, 2048
BtsI	GCAGTG	1 cut(s)	1115
BtsIMutI	CAGTG	7 cut(s)	530, 1115, 1281, 1443, 1826, 1896, 1958
Cac8I	GCNNGC	4 cut(s)	349, 1482, 1581, 1984
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	4 cut(s)	353, 375, 463, 742
Cfr10I	RCCGGY	1 cut(s)	2048
Cfr13I	GGNCC	1 cut(s)	1786
CsiI	ACCWGGT	1 cut(s)	1406
Csp6I	GTAC	3 cut(s)	1268, 1304, 1901
CspCI	CAANNNNNGTGG	2 cut(s)	1555, 1590
CviAII	CATG	7 cut(s)	143, 179, 1739, 1881, 1913, 1918, 1979
CviQI	GTAC	3 cut(s)	1268, 1304, 1901
DdeI	CTNAG	5 cut(s)	31, 852, 1230, 1539, 1987
DinI	GGCGCC	1 cut(s)	462
DpnI	GATC	9 cut(s)	25, 141, 480, 939, 984, 1023, 1737, 1932, 2066
DpnII	GATC	9 cut(s)	23, 139, 478, 937, 982, 1021, 1735, 1930, 2064
DraI	TTTAAA	1 cut(s)	508
DraIII	CACNNNGTG	1 cut(s)	470
EaeI	YGGCCR	2 cut(s)	132, 2046
EagI	CGGCCG	1 cut(s)	2046
Eam1104I	CTCTTC	3 cut(s)	69, 590, 804
EarI	CTCTTC	3 cut(s)	69, 590, 804
EclXI	CGGCCG	1 cut(s)	2046
Eco130I	CCWWGG	2 cut(s)	249, 2024
Eco32I	GATATC	1 cut(s)	1489
Eco47I	GGWCC	1 cut(s)	1786
Eco47III	AGCGCT	1 cut(s)	352
Eco52I	CGGCCG	1 cut(s)	2046
Eco57I	CTGAAG	5 cut(s)	111, 228, 1016, 1419, 1575
EcoRI	GAATTC	1 cut(s)	791
EcoRII	CCWGG	3 cut(s)	757, 1406, 2033
EcoRV	GATATC	1 cut(s)	1489
EcoT14I	CCWWGG	2 cut(s)	249, 2024
EcoT22I	ATGCAT	1 cut(s)	1530
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	249, 2024
Esp3I	CGTCTC	1 cut(s)	550
FaeI	CATG	7 cut(s)	146, 182, 1742, 1884, 1916, 1921, 1982
FalI	AAGNNNNNCTT	6 cut(s)	905, 937, 1254, 1286, 1311, 1343
FaqI	GGGAC	1 cut(s)	1272
FatI	CATG	7 cut(s)	142, 178, 1738, 1880, 1912, 1917, 1978
FauNDI	CATATG	3 cut(s)	484, 898, 1207
FbaI	TGATCA	3 cut(s)	139, 1735, 2064
FblI	GTMKAC	1 cut(s)	1547
Fnu4HI	GCNGC	1 cut(s)	2030
Fsp4HI	GCNGC	1 cut(s)	2030
FspBI	CTAG	4 cut(s)	348, 636, 1052, 1580
GlaI	GCGC	4 cut(s)	352, 374, 462, 741
GluI	GCNGC	1 cut(s)	2030
GsuI	CTGGAG	1 cut(s)	771
HaeII	RGCGCY	3 cut(s)	354, 464, 743
HaeIII	GGCC	2 cut(s)	134, 2048
HapII	CCGG	1 cut(s)	2049
HhaI	GCGC	4 cut(s)	353, 375, 463, 742
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	7 cut(s)	146, 182, 1742, 1884, 1916, 1921, 1982
Hin6I	GCGC	4 cut(s)	351, 373, 461, 740
HinP1I	GCGC	4 cut(s)	351, 373, 461, 740
HindIII	AAGCTT	1 cut(s)	1682
HpaII	CCGG	1 cut(s)	2049
HphI	GGTGA	6 cut(s)	29, 482, 604, 1672, 1745, 2074
Hpy166II	GTNNAC	5 cut(s)	190, 587, 873, 1548, 2043
Hpy188III	TCNNGA	9 cut(s)	171, 179, 263, 788, 986, 1052, 1229, 1372, 1385
Hpy8I	GTNNAC	5 cut(s)	190, 587, 873, 1548, 2043
HpyCH4III	ACNGT	7 cut(s)	470, 534, 1078, 1141, 1429, 1474, 1900
HpyCH4IV	ACGT	1 cut(s)	970
HpyCH4V	TGCA	9 cut(s)	488, 896, 1118, 1528, 1718, 1877, 1896, 1982, 2013
HpyF10VI	GCNNNNNNNGC	1 cut(s)	754
HpyF3I	CTNAG	5 cut(s)	31, 852, 1230, 1539, 1987
HpySE526I	ACGT	1 cut(s)	970
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	7 cut(s)	146, 182, 1742, 1884, 1916, 1921, 1982
HspAI	GCGC	4 cut(s)	351, 373, 461, 740
KasI	GGCGCC	1 cut(s)	460
Ksp22I	TGATCA	3 cut(s)	139, 1735, 2064
Kzo9I	GATC	9 cut(s)	23, 139, 478, 937, 982, 1021, 1735, 1930, 2064
LmnI	GCTCC	3 cut(s)	226, 1616, 1752
Lsp1109I	GCAGC	1 cut(s)	2041
LweI	GCATC	5 cut(s)	535, 808, 897, 1127, 1456
MabI	ACCWGGT	1 cut(s)	1406
MaeI	CTAG	4 cut(s)	348, 636, 1052, 1580
MaeII	ACGT	1 cut(s)	970
MaeIII	GTNAC	6 cut(s)	412, 470, 1064, 1078, 1201, 1585
MalI	GATC	9 cut(s)	25, 141, 480, 939, 984, 1023, 1737, 1932, 2066
MboI	GATC	9 cut(s)	23, 139, 478, 937, 982, 1021, 1735, 1930, 2064
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	4 cut(s)	23, 937, 1021, 1930
MhlI	GDGCHC	3 cut(s)	108, 953, 1406
MlsI	TGGCCA	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	134
Mly113I	GGCGCC	1 cut(s)	461
MlyI	GAGTC	5 cut(s)	56, 512, 686, 779, 2051
Mox20I	TGGCCA	1 cut(s)	134
Mph1103I	ATGCAT	1 cut(s)	1530
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	9 cut(s)	306, 507, 626, 630, 830, 912, 1412, 1422, 1935
MslI	CAYNNNNRTG	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	1 cut(s)	2049
MspR9I	CCNGG	3 cut(s)	759, 1408, 2035
MunI	CAATTG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	910
MvaI	CCWGG	3 cut(s)	759, 1408, 2035
MwoI	GCNNNNNNNGC	1 cut(s)	754
NarI	GGCGCC	1 cut(s)	461
NdeI	CATATG	3 cut(s)	484, 898, 1207
NdeII	GATC	9 cut(s)	23, 139, 478, 937, 982, 1021, 1735, 1930, 2064
NheI	GCTAGC	2 cut(s)	347, 1579
NlaIII	CATG	7 cut(s)	146, 182, 1742, 1884, 1916, 1921, 1982
NlaIV	GGNNCC	3 cut(s)	462, 1405, 1479
NmuCI	GTSAC	4 cut(s)	412, 470, 1064, 1201
NsiI	ATGCAT	1 cut(s)	1530
NspI	RCATGY	1 cut(s)	1884
NspV	TTCGAA	1 cut(s)	924
PacI	TTAATTAA	1 cut(s)	630
PagI	TCATGA	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	1 cut(s)	967
PctI	GAATGC	1 cut(s)	910
PfeI	GAWTC	6 cut(s)	200, 359, 561, 989, 1219, 1381
PflFI	GACNNNGTC	1 cut(s)	1429
PflMI	CCANNNNNTGG	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	2031
PleI	GAGTC	5 cut(s)	56, 512, 686, 778, 2051
PluTI	GGCGCC	1 cut(s)	464
PpsI	GAGTC	5 cut(s)	56, 512, 686, 778, 2051
Psp6I	CCWGG	3 cut(s)	757, 1406, 2033
PspGI	CCWGG	3 cut(s)	757, 1406, 2033
PspN4I	GGNNCC	3 cut(s)	462, 1405, 1479
PspPI	GGNCC	1 cut(s)	1786
PsuI	RGATCY	4 cut(s)	23, 937, 1021, 1930
PsyI	GACNNNGTC	1 cut(s)	1429
RsaI	GTAC	3 cut(s)	1269, 1305, 1902
RsaNI	GTAC	3 cut(s)	1268, 1304, 1901
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	9 cut(s)	306, 507, 626, 630, 830, 912, 1412, 1422, 1935
SatI	GCNGC	1 cut(s)	2030
Sau3AI	GATC	9 cut(s)	23, 139, 478, 937, 982, 1021, 1735, 1930, 2064
Sau96I	GGNCC	1 cut(s)	1786
SchI	GAGTC	5 cut(s)	56, 512, 686, 779, 2051
ScrFI	CCNGG	3 cut(s)	759, 1408, 2035
SduI	GDGCHC	3 cut(s)	108, 953, 1406
SexAI	ACCWGGT	1 cut(s)	1406
SfaNI	GCATC	5 cut(s)	535, 808, 897, 1127, 1456
SfoI	GGCGCC	1 cut(s)	462
SfuI	TTCGAA	1 cut(s)	924
SinI	GGWCC	1 cut(s)	1786
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	1025
SmoI	CTYRAG	1 cut(s)	1025
SsiI	CCGC	1 cut(s)	847
SspDI	GGCGCC	1 cut(s)	460
SspI	AATATT	1 cut(s)	979
SspMI	CTAG	4 cut(s)	348, 636, 1052, 1580
StyD4I	CCNGG	3 cut(s)	757, 1406, 2033
StyI	CCWWGG	2 cut(s)	249, 2024
TaaI	ACNGT	7 cut(s)	470, 534, 1078, 1141, 1429, 1474, 1900
TaiI	ACGT	1 cut(s)	973
TaqI	TCGA	2 cut(s)	226, 924
TatI	WGTACW	3 cut(s)	1267, 1303, 1900
TfiI	GAWTC	6 cut(s)	200, 359, 561, 989, 1219, 1381
Tru1I	TTAA	9 cut(s)	306, 507, 626, 630, 830, 912, 1412, 1422, 1935
Tru9I	TTAA	9 cut(s)	306, 507, 626, 630, 830, 912, 1412, 1422, 1935
TscAI	CASTG	7 cut(s)	537, 1115, 1288, 1443, 1826, 1903, 1965
TseFI	GTSAC	4 cut(s)	412, 470, 1064, 1201
TseI	GCWGC	1 cut(s)	2029
Tsp45I	GTSAC	4 cut(s)	412, 470, 1064, 1201
TspGWI	ACGGA	3 cut(s)	719, 1228, 1857
TspRI	CASTG	7 cut(s)	537, 1115, 1288, 1443, 1826, 1903, 1965
Tth111I	GACNNNGTC	1 cut(s)	1429
Van91I	CCANNNNNTGG	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	1786
XapI	RAATTY	5 cut(s)	377, 791, 1146, 1766, 2015
XbaI	TCTAGA	1 cut(s)	1051
XceI	RCATGY	1 cut(s)	1884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2031
XmiI	GTMKAC	1 cut(s)	1547
XspI	CTAG	4 cut(s)	348, 636, 1052, 1580
Zsp2I	ATGCAT	1 cut(s)	1530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.