Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Forward (+)

23639558 .. 23645697

Gene Structure 6140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G020660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGAAGGTGAAGAAGAAGAGCTCTGTTGCGGCAGACTCGGTGAAAGAACAACAGAAGAAGCAAAAAGGGAAGGGGAAGATGAAGATGAAGATTCCTGAAGCGAAACAAGAAAAACAGCAACCGGAGGAAGTAGACTCTGATTCTGTTTACGATTCCGGAGCTGAAGATGAGAGGAGTCTGTCAAATCATGAGGATATGTCTGGTGGTGAAGGATCTGACTTAGAGGATTATCCATCAATCAGAGACACAGACTCGGAAGATGAAGAGAGTGGTTTTTCTGAAGATGAGGGTGTGCTCAACACCAGCAGAAATGATGGTTTGGCCATTGATCATGGTAATGAGGAGGAAAGTGATAGTTCTGGACTTCATGAAGTAGTCGAGGAAAGTGATTCATCTGAAGATGAGGTTGCTCCTCGAAATACAATTGGTGCTGTTCCCTTGGAGTGGTATCGGGATGAGAAACATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAGAAGGAAAGAGAAGATAAATTACAATCCTTTCTTGCTAGCGCTGATGATTCCAAAAATTGGCGCAAATTTTTGGATGAATACAATGACGAGGAAGTAGAAGTGACAAAAGAAGATATGAAAACTATAAATAGATTGCTTGAAGGAAAGGCGCCACACAGTGACTTTGATCCATATGCGCCTTATGTTGATTGGTTTAAATGGGATGACTCAAAGCATCCACTGTCAAATGCTCCTGAACCCAAGAGACGATTCATTCCTTCAAAATCTGAAAGTAAACTGGTGAAGAGGTTAGTATTAGCAATTCGGAAGGGTTTAATTAAGCCTAGAAAGGATGAAGAAGAAGAAGAAGAAGAAGAGGAAAGTGTTTATCCCTTGTGGGGAGACGACTCTAATTCAACGGAAAAGGATGGTAGCCATTTATCTTACATTCCAGCACCAAAGCCAAAATTGCCAGGGTATGAGGAGTCCTTCAATCCTCCTCCAGAATTCATCCCATCACAAGAAGGGATTGATGCTTATCAGTTAATGTATGAGGAAGACCGCCCTAAGTTTATACCAAAAAGGTTTACATCTATGAGAAGCATCCCTGCATATGAGAATGCTATTAAGGAGTGCTTCGAAAGATGTTTGGATCTATACTTGTGCCCCAGAGTTCGGAAGAAACGTATCAATATTGATCCTGAATCTCTGAAGCCCAAGCTACCAAGCCGAAAGGATCTCAAGCCTTATCCTGTGAAATGTTATCTAGAGTATAGAGGTCACAAAGACACAGTTACATCAGTTTCCACAGAAGTTTCAGGGCAGTGGATTGCATCAGGTTCATTGGATGGAACTGTGCGTATTTGGGAGGTTGAAACTGGTAGATGTCTCAAACTCTGGGAGATTGGAGAAGCTGTCACATATGTAGCTTGGAATCCCAATCCTGAGTATTCTGTATTGGCTGTCTCTGTGGGACAAGATGTACTTATTCTCAACACTGGTTTTGGGAATGAAGAAGTACAGAAAAAAACTAAAGAACTTCTTTCGGCTGAAACACCTACCACACCAGATGACACGGCTACCTTCGTGAGCTGGATTCAAGATGAAACACATGAGGGCACCAGGTTAAGACATTTTAAGACTGTGTCTTCAGTGGAATGGCATCGTAGAGGAGACTACTTTTCAACGGTGGTGCCAGCAGGCCAATCAAAATCAATTTTTATGCATAGGCTCTCTCAGAAGTCTACCCAGACATTTTCAATTAAGTTGGGTGGGCTTGCAGTTACTTCAGTTTTCCATCCTGTTCGCTCCCACATCTTCATTTCTACGAAGAAGACTATTCGCCAATATGATTTGGTGAAGGGAAAGCAAATCAGAAAGCTTGATACAGGACTAAAAGAAATCTCCTCCATTGCAGTTCATCCTTCTGGTGATCATGTCATTGTGGGGAGCAGAGAAGGAAAATTTTGTTGGTTTGATATGGACCTTTCAACCAAAAAACCTTACCTTATTCGCCAGTGGCATAAGAAGGACATCAACAATGTGTCTATCCATCGTTTATATCCGTTGTTTGCAACATGCTCTGATGATTGCACCATACAAGTTTCTCATGGCATGGTTTATTCAGATCTTAACCAGAACCCTCTTATAGTTCCACTGGAAATACTCCGAGGTCATGCAAGCTCAGATGGGAGAGGTGTAATGGATTGCAAATTCCACCCAAGGCAGCCCTGGTTGTTCACGGCCGGTGCTGACTCGGTGATCAGACTTTACTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

753

Amino Acids

85.81

Weight (kDa)

5.53

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	150 - 411	8.5e-99	BOP1NT (NUC169) domain
WD40	PF00400	413 - 449	2.2e-09	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	414 - 493	9e-13	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	416 - 551	5.4e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	416 - 488	2.7e-07	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	416 - 499	3.4e-10	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	417 - 478	1.5e-06	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	418 - 495	2.2e-08	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	418 - 493	8.5e-06	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	526 - 655	8.3e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	538 - 751	9.8e-13	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	561 - 700	1.8e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	600 - 751	1.6e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	601 - 695	2e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	605 - 751	1.2e-08	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	626 - 751	1.6e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	649, 1598, 1672
AccB7I	CCANNNNNTGG	1 cut(s)	558
AccI	GTMKAC	2 cut(s)	132, 1724
AccIII	TCCGGA	1 cut(s)	155
AciI	CCGC	2 cut(s)	29, 1042
AclWI	GGATC	5 cut(s)	220, 662, 1140, 1172, 1224
AcoI	YGGCCR	2 cut(s)	321, 2223
AcsI	RAATTY	4 cut(s)	566, 986, 1943, 2192
AcuI	CTGAAG	7 cut(s)	117, 183, 300, 417, 1211, 1614, 1752
AcyI	GRCGYC	1 cut(s)	650
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	2 cut(s)	1464, 1500
AfeI	AGCGCT	1 cut(s)	541
AfiI	CCNNNNNNNGG	4 cut(s)	444, 558, 878, 1155
AgsI	TTSAA	9 cut(s)	641, 762, 897, 973, 1355, 1580, 1665, 1740, 1971
AjnI	CCWGG	3 cut(s)	952, 1601, 2210
AjuI	GAANNNNNNNTTGG	4 cut(s)	734, 766, 1933, 1965
AluBI	AGCT	8 cut(s)	21, 161, 1201, 1394, 1409, 1572, 1861, 2163
AluI	AGCT	8 cut(s)	21, 161, 1201, 1394, 1409, 1572, 1861, 2163
Alw21I	GWGCWC	2 cut(s)	23, 297
Alw26I	GTCTC	6 cut(s)	237, 739, 876, 1373, 1450, 1647
AlwI	GGATC	5 cut(s)	220, 662, 1140, 1172, 1224
Aor13HI	TCCGGA	1 cut(s)	155
Aor51HI	AGCGCT	1 cut(s)	541
AoxI	GGCC	3 cut(s)	321, 1681, 2223
ApeKI	GCWGC	1 cut(s)	2206
ApoI	RAATTY	4 cut(s)	566, 986, 1943, 2192
AspLEI	GCGC	4 cut(s)	542, 564, 652, 679
AspS9I	GGNCC	1 cut(s)	1963
AsuHPI	GGTGA	7 cut(s)	19, 52, 218, 793, 1849, 1922, 2251
AsuII	TTCGAA	1 cut(s)	1119
AsuNHI	GCTAGC	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	1963
BaeGI	GKGCMC	2 cut(s)	1148, 1601
BalI	TGGCCA	1 cut(s)	323
BanI	GGYRCC	3 cut(s)	649, 1598, 1672
BanII	GRGCYC	1 cut(s)	23
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
BbsI	GAAGAC	3 cut(s)	1044, 1620, 1820
Bbv12I	GWGCWC	2 cut(s)	23, 297
BbvI	GCAGC	1 cut(s)	2218
BccI	CCATC	8 cut(s)	241, 308, 902, 1003, 1322, 1785, 2040, 2162
BceAI	ACGGC	2 cut(s)	1572, 2238
BciT130I	CCWGG	3 cut(s)	954, 1603, 2212
BclI	TGATCA	3 cut(s)	328, 1912, 2241
BcoDI	GTCTC	6 cut(s)	237, 739, 876, 1373, 1450, 1647
BfaI	CTAG	3 cut(s)	537, 825, 1247
BfoI	RGCGCY	2 cut(s)	543, 653
BglII	AGATCT	1 cut(s)	2107
BisI	GCNGC	2 cut(s)	30, 2207
BlsI	GCNGC	2 cut(s)	31, 2208
Bme1390I	CCNGG	3 cut(s)	954, 1603, 2212
Bme18I	GGWCC	1 cut(s)	1963
BmgT120I	GGNCC	1 cut(s)	1963
BmiI	GGNNCC	3 cut(s)	651, 1600, 1674
BmrFI	CCNGG	3 cut(s)	954, 1603, 2212
BmsI	GCATC	5 cut(s)	724, 1003, 1092, 1322, 1651
BmtI	GCTAGC	1 cut(s)	540
BpiI	GAAGAC	3 cut(s)	1044, 1620, 1820
BpmI	CTGGAG	1 cut(s)	966
Bpu14I	TTCGAA	1 cut(s)	1119
BpuEI	CTTGAG	1 cut(s)	1205
BsaBI	GATNNNNATC	1 cut(s)	1017
BsaHI	GRCGYC	1 cut(s)	650
BsaJI	CCNNGG	5 cut(s)	438, 953, 2149, 2201, 2210
BsaWI	WCCGGW	2 cut(s)	121, 155
BsaXI	ACNNNNNCTCC	2 cut(s)	1380, 1410
Bsc4I	CCNNNNNNNGG	4 cut(s)	444, 558, 878, 1155
Bse118I	RCCGGY	1 cut(s)	2225
Bse1I	ACTGG	5 cut(s)	783, 1363, 1483, 1996, 2142
Bse3DI	GCAATG	1 cut(s)	1890
Bse8I	GATNNNNATC	1 cut(s)	1017
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	3 cut(s)	954, 1603, 2212
BseDI	CCNNGG	5 cut(s)	438, 953, 2149, 2201, 2210
BseJI	GATNNNNATC	1 cut(s)	1017
BseLI	CCNNNNNNNGG	4 cut(s)	444, 558, 878, 1155
BseMI	GCAATG	1 cut(s)	1890
BseMII	CTCAG	3 cut(s)	1416, 1730, 2178
BseNI	ACTGG	5 cut(s)	783, 1363, 1483, 1996, 2142
BseRI	GAGGAG	7 cut(s)	187, 356, 402, 969, 977, 1665, 1876
BseSI	GKGCMC	2 cut(s)	1148, 1601
BseX3I	CGGCCG	1 cut(s)	2223
BseXI	GCAGC	1 cut(s)	2218
Bsh1285I	CGRYCG	1 cut(s)	2226
BshFI	GGCC	3 cut(s)	323, 1683, 2225
BshNI	GGYRCC	3 cut(s)	649, 1598, 1672
BsiEI	CGRYCG	1 cut(s)	2226
BsiHKAI	GWGCWC	2 cut(s)	23, 297
BsiSI	CCGG	3 cut(s)	122, 156, 2226
BslFI	GGGAC	1 cut(s)	1467
BslI	CCNNNNNNNGG	4 cut(s)	444, 558, 878, 1155
BsmAI	GTCTC	6 cut(s)	237, 739, 876, 1373, 1450, 1647
BsmBI	CGTCTC	2 cut(s)	739, 876
BsmFI	GGGAC	1 cut(s)	1467
BsmI	GAATGC	1 cut(s)	1105
BsnI	GGCC	3 cut(s)	323, 1683, 2225
Bsp119I	TTCGAA	1 cut(s)	1119
Bsp1286I	GDGCHC	4 cut(s)	23, 297, 1148, 1601
Bsp13I	TCCGGA	1 cut(s)	155
BspACI	CCGC	2 cut(s)	29, 1042
BspANI	GGCC	3 cut(s)	323, 1683, 2225
BspCNI	CTCAG	3 cut(s)	1417, 1729, 2177
BspEI	TCCGGA	1 cut(s)	155
BspHI	TCATGA	2 cut(s)	187, 367
BspLI	GGNNCC	3 cut(s)	651, 1600, 1674
BspOI	GCTAGC	1 cut(s)	540
BspPI	GGATC	5 cut(s)	220, 662, 1140, 1172, 1224
BspQI	GCTCTTC	1 cut(s)	11
BspT104I	TTCGAA	1 cut(s)	1119
BspT107I	GGYRCC	3 cut(s)	649, 1598, 1672
BsrDI	GCAATG	1 cut(s)	1890
BsrFI	RCCGGY	1 cut(s)	2225
BsrI	ACTGG	5 cut(s)	783, 1363, 1483, 1996, 2142
BssAI	RCCGGY	1 cut(s)	2225
BssECI	CCNNGG	5 cut(s)	438, 953, 2149, 2201, 2210
BssNI	GRCGYC	1 cut(s)	650
BssT1I	CCWWGG	2 cut(s)	438, 2201
Bst2UI	CCWGG	3 cut(s)	954, 1603, 2212
Bst4CI	ACNGT	6 cut(s)	659, 723, 1273, 1336, 1624, 1669
Bst6I	CTCTTC	4 cut(s)	11, 258, 779, 849
BstACI	GRCGYC	1 cut(s)	650
BstBI	TTCGAA	1 cut(s)	1119
BstC8I	GCNNGC	5 cut(s)	538, 1677, 1681, 1758, 2161
BstDEI	CTNAG	5 cut(s)	220, 1047, 1425, 1716, 2164
BstH2I	RGCGCY	2 cut(s)	543, 653
BstHHI	GCGC	4 cut(s)	542, 564, 652, 679
BstMAI	GTCTC	6 cut(s)	237, 739, 876, 1373, 1450, 1647
BstMCI	CGRYCG	1 cut(s)	2226
BstMWI	GCNNNNNNNGC	1 cut(s)	949
BstNI	CCWGG	3 cut(s)	954, 1603, 2212
BstNSI	RCATGY	1 cut(s)	2061
BstSCI	CCNGG	3 cut(s)	952, 1601, 2210
BstSLI	GKGCMC	2 cut(s)	1148, 1601
BstV1I	GCAGC	1 cut(s)	2218
BstV2I	GAAGAC	3 cut(s)	1044, 1620, 1820
BstX2I	RGATCY	4 cut(s)	212, 1132, 1216, 2107
BstYI	RGATCY	4 cut(s)	212, 1132, 1216, 2107
BstZI	CGGCCG	1 cut(s)	2223
BsuRI	GGCC	3 cut(s)	323, 1683, 2225
BtsI	GCAGTG	1 cut(s)	1310
BtsIMutI	CAGTG	7 cut(s)	664, 719, 1310, 1476, 1638, 2003, 2135
Cac8I	GCNNGC	5 cut(s)	538, 1677, 1681, 1758, 2161
CciI	TCATGA	2 cut(s)	187, 367
CfoI	GCGC	4 cut(s)	542, 564, 652, 679
Cfr10I	RCCGGY	1 cut(s)	2225
Cfr13I	GGNCC	1 cut(s)	1963
CsiI	ACCWGGT	1 cut(s)	1601
Csp6I	GTAC	2 cut(s)	1463, 1499
CviAII	CATG	9 cut(s)	188, 332, 368, 1592, 1916, 2058, 2090, 2095, 2156
CviQI	GTAC	2 cut(s)	1463, 1499
DdeI	CTNAG	5 cut(s)	220, 1047, 1425, 1716, 2164
DinI	GGCGCC	1 cut(s)	651
DraI	TTTAAA	1 cut(s)	697
DraIII	CACNNNGTG	1 cut(s)	659
EaeI	YGGCCR	2 cut(s)	321, 2223
EagI	CGGCCG	1 cut(s)	2223
Eam1104I	CTCTTC	4 cut(s)	11, 258, 779, 849
EarI	CTCTTC	4 cut(s)	11, 258, 779, 849
Ecl136II	GAGCTC	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	2223
Eco130I	CCWWGG	2 cut(s)	438, 2201
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	1963
Eco47III	AGCGCT	1 cut(s)	541
Eco52I	CGGCCG	1 cut(s)	2223
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	7 cut(s)	117, 183, 300, 417, 1211, 1614, 1752
EcoICRI	GAGCTC	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	986
EcoRII	CCWGG	3 cut(s)	952, 1601, 2210
EcoT14I	CCWWGG	2 cut(s)	438, 2201
EcoT22I	ATGCAT	1 cut(s)	1707
EcoT38I	GRGCYC	1 cut(s)	23
EgeI	GGCGCC	1 cut(s)	651
EheI	GGCGCC	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	438, 2201
Esp3I	CGTCTC	2 cut(s)	739, 876
FaeI	CATG	9 cut(s)	191, 335, 371, 1595, 1919, 2061, 2093, 2098, 2159
FalI	AAGNNNNNCTT	6 cut(s)	1100, 1132, 1449, 1481, 1506, 1538
FaqI	GGGAC	1 cut(s)	1467
FatI	CATG	9 cut(s)	187, 331, 367, 1591, 1915, 2057, 2089, 2094, 2155
FauNDI	CATATG	3 cut(s)	673, 1093, 1402
FbaI	TGATCA	3 cut(s)	328, 1912, 2241
FblI	GTMKAC	2 cut(s)	132, 1724
Fnu4HI	GCNGC	2 cut(s)	30, 2207
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	30, 2207
FspBI	CTAG	3 cut(s)	537, 825, 1247
GlaI	GCGC	4 cut(s)	541, 563, 651, 678
GluI	GCNGC	2 cut(s)	30, 2207
GsuI	CTGGAG	1 cut(s)	966
HaeII	RGCGCY	2 cut(s)	543, 653
HaeIII	GGCC	3 cut(s)	323, 1683, 2225
HapII	CCGG	3 cut(s)	122, 156, 2226
HhaI	GCGC	4 cut(s)	542, 564, 652, 679
Hin1I	GRCGYC	1 cut(s)	650
Hin1II	CATG	9 cut(s)	191, 335, 371, 1595, 1919, 2061, 2093, 2098, 2159
Hin6I	GCGC	4 cut(s)	540, 562, 650, 677
HinP1I	GCGC	4 cut(s)	540, 562, 650, 677
HindIII	AAGCTT	1 cut(s)	1859
HpaII	CCGG	3 cut(s)	122, 156, 2226
HphI	GGTGA	7 cut(s)	19, 52, 218, 793, 1849, 1922, 2251
Hpy166II	GTNNAC	6 cut(s)	133, 148, 776, 1068, 1725, 2220
Hpy8I	GTNNAC	6 cut(s)	133, 148, 776, 1068, 1725, 2220
HpyCH4III	ACNGT	6 cut(s)	659, 723, 1273, 1336, 1624, 1669
HpyCH4IV	ACGT	1 cut(s)	1165
HpyCH4V	TGCA	9 cut(s)	1091, 1313, 1705, 1760, 1895, 2054, 2073, 2159, 2190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	949
HpyF3I	CTNAG	5 cut(s)	220, 1047, 1425, 1716, 2164
HpySE526I	ACGT	1 cut(s)	1165
Hsp92I	GRCGYC	1 cut(s)	650
Hsp92II	CATG	9 cut(s)	191, 335, 371, 1595, 1919, 2061, 2093, 2098, 2159
HspAI	GCGC	4 cut(s)	540, 562, 650, 677
KasI	GGCGCC	1 cut(s)	649
Kpn2I	TCCGGA	1 cut(s)	155
Ksp22I	TGATCA	3 cut(s)	328, 1912, 2241
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	5 cut(s)	158, 415, 736, 1793, 1929
Lsp1109I	GCAGC	1 cut(s)	2218
LweI	GCATC	5 cut(s)	724, 1003, 1092, 1322, 1651
MabI	ACCWGGT	1 cut(s)	1601
MaeI	CTAG	3 cut(s)	537, 825, 1247
MaeII	ACGT	1 cut(s)	1165
MaeIII	GTNAC	6 cut(s)	601, 659, 1259, 1273, 1396, 1762
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	4 cut(s)	212, 1132, 1216, 2107
MhlI	GDGCHC	4 cut(s)	23, 297, 1148, 1601
MlsI	TGGCCA	1 cut(s)	323
MluNI	TGGCCA	1 cut(s)	323
Mly113I	GGCGCC	1 cut(s)	650
MlyI	GAGTC	8 cut(s)	29, 128, 184, 245, 701, 881, 974, 2228
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	1707
MroI	TCCGGA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	323
MspI	CCGG	3 cut(s)	122, 156, 2226
MspR9I	CCNGG	3 cut(s)	954, 1603, 2212
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	1105
MvaI	CCWGG	3 cut(s)	954, 1603, 2212
MwoI	GCNNNNNNNGC	1 cut(s)	949
NarI	GGCGCC	1 cut(s)	650
NdeI	CATATG	3 cut(s)	673, 1093, 1402
NheI	GCTAGC	1 cut(s)	536
NlaIII	CATG	9 cut(s)	191, 335, 371, 1595, 1919, 2061, 2093, 2098, 2159
NlaIV	GGNNCC	3 cut(s)	651, 1600, 1674
NmuCI	GTSAC	4 cut(s)	601, 659, 1259, 1396
NsiI	ATGCAT	1 cut(s)	1707
NspI	RCATGY	1 cut(s)	2061
NspV	TTCGAA	1 cut(s)	1119
PacI	TTAATTAA	1 cut(s)	819
PagI	TCATGA	2 cut(s)	187, 367
PciSI	GCTCTTC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	1162
PctI	GAATGC	1 cut(s)	1105
PfeI	GAWTC	9 cut(s)	91, 140, 152, 389, 548, 750, 1184, 1414, 1576
PflFI	GACNNNGTC	1 cut(s)	1624
PflMI	CCANNNNNTGG	1 cut(s)	558
PkrI	GCNGC	2 cut(s)	31, 2208
PleI	GAGTC	8 cut(s)	29, 128, 183, 245, 701, 881, 973, 2228
PluTI	GGCGCC	1 cut(s)	653
PpsI	GAGTC	8 cut(s)	29, 128, 183, 245, 701, 881, 973, 2228
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	3 cut(s)	952, 1601, 2210
PspGI	CCWGG	3 cut(s)	952, 1601, 2210
PspN4I	GGNNCC	3 cut(s)	651, 1600, 1674
PspPI	GGNCC	1 cut(s)	1963
PsuI	RGATCY	4 cut(s)	212, 1132, 1216, 2107
PsyI	GACNNNGTC	1 cut(s)	1624
RsaI	GTAC	2 cut(s)	1464, 1500
RsaNI	GTAC	2 cut(s)	1463, 1499
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	2 cut(s)	30, 2207
Sau96I	GGNCC	1 cut(s)	1963
SchI	GAGTC	8 cut(s)	29, 128, 184, 245, 701, 881, 974, 2228
ScrFI	CCNGG	3 cut(s)	954, 1603, 2212
SduI	GDGCHC	4 cut(s)	23, 297, 1148, 1601
SexAI	ACCWGGT	1 cut(s)	1601
SfaNI	GCATC	5 cut(s)	724, 1003, 1092, 1322, 1651
SfoI	GGCGCC	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	1119
SinI	GGWCC	1 cut(s)	1963
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	1220
SmoI	CTYRAG	1 cut(s)	1220
SsiI	CCGC	2 cut(s)	29, 1042
SspDI	GGCGCC	1 cut(s)	649
SspI	AATATT	1 cut(s)	1174
SspMI	CTAG	3 cut(s)	537, 825, 1247
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	3 cut(s)	952, 1601, 2210
StyI	CCWWGG	2 cut(s)	438, 2201
TaaI	ACNGT	6 cut(s)	659, 723, 1273, 1336, 1624, 1669
TaiI	ACGT	1 cut(s)	1168
TaqI	TCGA	3 cut(s)	378, 415, 1119
TatI	WGTACW	2 cut(s)	1462, 1498
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	9 cut(s)	91, 140, 152, 389, 548, 750, 1184, 1414, 1576
TscAI	CASTG	7 cut(s)	664, 726, 1310, 1483, 1638, 2003, 2142
TseFI	GTSAC	4 cut(s)	601, 659, 1259, 1396
TseI	GCWGC	1 cut(s)	2206
Tsp45I	GTSAC	4 cut(s)	601, 659, 1259, 1396
TspGWI	ACGGA	2 cut(s)	914, 2034
TspRI	CASTG	7 cut(s)	664, 726, 1310, 1483, 1638, 2003, 2142
Tth111I	GACNNNGTC	1 cut(s)	1624
Van91I	CCANNNNNTGG	1 cut(s)	558
VpaK11BI	GGWCC	1 cut(s)	1963
XapI	RAATTY	4 cut(s)	566, 986, 1943, 2192
XbaI	TCTAGA	1 cut(s)	1246
XceI	RCATGY	1 cut(s)	2061
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2208
XmiI	GTMKAC	2 cut(s)	132, 1724
XspI	CTAG	3 cut(s)	537, 825, 1247
Zsp2I	ATGCAT	1 cut(s)	1707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.