Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Forward (+)

21118390 .. 21136986

Gene Structure 18597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG238700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1971 bp

ATGAGATTTCGATTTAGTGCCGATGTGGTGATTGCTCTGCTAACCGGTGCTTGGTTGCAGAAAATAATTTGGGAATGCAATATGTGTCTGATCGACGGTCTTCCGCTTGTCGATATCGACGATAATGTGTTGGACAAGGTGGCTATTAAAGGATGCAGTGACTCTTTGGCCGAAAACCCTAAACCTCACATCCCCGCTTCTCATTCTCCCCCTCCCCACGTCGCCGGCCCTGAGCTTCACTTTTTGGCGCCGACGCCTCACCTTTTCGGACAGCCCCTGCCTCTCTTGTTCTTCTTCTTAGGAGAAAGAATGAAGGTGAAGAAGAAGAGCTCTGTTGTGGCAGACCCGGTGAAAGAACAACAGAAGAAGCAAAAGGGGAAGGGGAAGATGAAGATGAAGATTCCTGAAGCGAAACAAGAAAAACAGCAACCGGAGGAAGTAGACTCTGATTCTGTTTACGATTCCGGAGCTGAAGATGAGAGGAGTCTGTCAAATCTTGAGGATATGTCTGGTGGTGAAGGATCTGACTTAGAGGATTATCCATCAATCAGAGACACAGACTCGGAAGATGAAGAGAGTGGTTTTTCTGAAAATGAGGGTGAGCTCAACACCAGCAGAAATGATGGTTTGGCAATTGATCATGGTAATGAGGAGGAAAGTGATAGTTCTGGACTTGATGAAGTAGTCGAGGAAAGTGATTCATCTGAAGATGAGGTTGCTCCTCGAAATACAATTGGTGCTGTTCCCTTGGAGTGGTATCGGGATGAGAAACATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAGAAGGAAAGAGAAGATAAATTACAATCCTTTCTCGCTAGCGCTGATGATTCCAAAAATTGGCGCAAATTTTTGGATGAATACAATGACGAGGAAGTAGAAGTGACAAAAGAAGATATGAAAACTATAAATAGATTGCTTGAAGGAAAGGCGCCACACGGTGACTTTGATCCATATGCGCCTTATGTTGATTGGTTCAAATGGGATGACTCAAAGCATCCACTGTCAAATGCCCCTGAACCCAAGAGACGATTCATTCCTTCAAAATCTGAAAGTAAACTGGTGAAGAGGTTAGTATTAGCAATTCGGAAGGGTTTAATTAAGCCTAGAAAGGATGAAGAAGAAGAAGAAGAAGAAAGTGTTTATCCCTTGTGGGGAGACGACTCTAATTCAACGGAAAAGGATGGTAGCCATTTATCTTACATTCCAGCGCCAAAGCCAAAATTGCCAGGGTATGAGGAGTCTTTCAATCCTCCTCCAGAATTCATCCCAACACAAGAAGAGATTGATGCTTATCAGTTAATGTATGAGGAAGACCGCCCTAAGTTTATACCGAAAAGGTTTACATCTATGAGAAGCATCCCTGCATATGAGAATGCTATTAAGGAATGCTTCGAAAGATGTTTGGATCTATACTTGTGCCCCAGAGCTCGGAAGAAACGTATCAATATTGATCCTGAATCTCTGAAGCCCAAGCTACCAAGCCGAAAGGATCTCAAGCCTTATCCTGTGAAATGTTATCTAGAGTATAGAGGTCACAAAGACACAGTTACATCAGTTTCCACAGAAGTTTCAGGGCAGTGGATTGCATCAGGTTCATTGGATGGAACTGTGCGTATTTGGGAGGTTGAAACTGGTAGATGTCTCAAACTCTGGGAGATTGGAGAAGCTGTCACATATGTAGCTTGGAATCCCAATCCTGAGTATTCCGTATTGGCTGTCTCTGTGGGACAAGATGTACTTATTCTCAACACTGGTTTTGGGAATGAAGAAGTACAGAAAAAAACTAAAGAACTTCTTTCAGCTGAAACACCTACCACACCAGATGACACGGGTGAGTGTGAGTTTGCTGTTGCTCTGAATATATTCAAAAAATGGTTTCTAACCCTTACAATACACATACATTGGCAAAACAGCTACCTTCGTGAGCTGGATTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

656

Amino Acids

74.65

Weight (kDa)

4.91

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	253 - 512	7.5e-100	BOP1NT (NUC169) domain
WD40	PF00400	514 - 550	1.8e-09	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	515 - 594	8e-13	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	517 - 600	2.8e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	517 - 589	2.4e-07	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	518 - 579	2.9e-10	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	518 - 579	1.2e-06	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	519 - 581	3.5e-08	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	519 - 593	9.1e-06	CAF1B/HIR1 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	247, 958
AccB7I	CCANNNNNTGG	1 cut(s)	867
AccI	GTMKAC	1 cut(s)	441
AccIII	TCCGGA	1 cut(s)	464
AciI	CCGC	3 cut(s)	104, 195, 1345
AclWI	GGATC	5 cut(s)	529, 971, 1443, 1475, 1527
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	875, 1289
AcuI	CTGAAG	4 cut(s)	426, 492, 726, 1514
AcyI	GRCGYC	3 cut(s)	248, 254, 959
AdeI	CACNNNGTG	1 cut(s)	968
AfaI	GTAC	2 cut(s)	1767, 1803
AfeI	AGCGCT	1 cut(s)	850
AfiI	CCNNNNNNNGG	5 cut(s)	51, 753, 867, 1181, 1458
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	8 cut(s)	950, 1006, 1071, 1200, 1276, 1658, 1897, 1965
AjiI	CACGTC	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	1255
AjuI	GAANNNNNNNTTGG	2 cut(s)	1043, 1075
Alw21I	GWGCWC	3 cut(s)	332, 606, 1459
Alw26I	GTCTC	5 cut(s)	546, 1048, 1179, 1676, 1753
AlwI	GGATC	5 cut(s)	529, 971, 1443, 1475, 1527
AlwNI	CAGNNNCTG	1 cut(s)	277
Aor13HI	TCCGGA	1 cut(s)	464
Aor51HI	AGCGCT	1 cut(s)	850
AoxI	GGCC	2 cut(s)	168, 226
ApoI	RAATTY	2 cut(s)	875, 1289
AsiGI	ACCGGT	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	1892
AspLEI	GCGC	6 cut(s)	250, 851, 873, 961, 988, 1240
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	9 cut(s)	40, 251, 328, 361, 527, 611, 980, 1102, 1874
AsuII	TTCGAA	1 cut(s)	1422
AsuNHI	GCTAGC	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	1451
BanI	GGYRCC	2 cut(s)	247, 958
BanII	GRGCYC	3 cut(s)	332, 606, 1459
BarI	GAAGNNNNNNTAC	2 cut(s)	813, 845
BbsI	GAAGAC	2 cut(s)	92, 1347
Bbv12I	GWGCWC	3 cut(s)	332, 606, 1459
BccI	CCATC	4 cut(s)	550, 617, 1205, 1625
BciT130I	CCWGG	1 cut(s)	1257
BclI	TGATCA	1 cut(s)	637
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	5 cut(s)	546, 1048, 1179, 1676, 1753
BfaI	CTAG	3 cut(s)	846, 1134, 1550
BfoI	RGCGCY	4 cut(s)	251, 852, 962, 1241
Bme1390I	CCNGG	2 cut(s)	347, 1257
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	249, 960
BmrFI	CCNGG	2 cut(s)	347, 1257
BmsI	GCATC	5 cut(s)	143, 1033, 1306, 1395, 1625
BmtI	GCTAGC	1 cut(s)	849
BpiI	GAAGAC	2 cut(s)	92, 1347
BpmI	CTGGAG	1 cut(s)	1269
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	1422
BpuEI	CTTGAG	2 cut(s)	518, 1508
BpuMI	CCSGG	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	1320
BsaHI	GRCGYC	3 cut(s)	248, 254, 959
BsaJI	CCNNGG	2 cut(s)	747, 1256
BsaWI	WCCGGW	3 cut(s)	44, 430, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	1683, 1713
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 753, 867, 1181, 1458
Bse118I	RCCGGY	2 cut(s)	44, 224
Bse1I	ACTGG	3 cut(s)	1092, 1666, 1786
Bse8I	GATNNNNATC	1 cut(s)	1320
BseAI	TCCGGA	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	1257
BseDI	CCNNGG	2 cut(s)	747, 1256
BseJI	GATNNNNATC	1 cut(s)	1320
BseLI	CCNNNNNNNGG	5 cut(s)	51, 753, 867, 1181, 1458
BseMII	CTCAG	2 cut(s)	222, 1719
BseNI	ACTGG	3 cut(s)	1092, 1666, 1786
BseRI	GAGGAG	5 cut(s)	496, 665, 711, 1272, 1280
BseSI	GKGCMC	1 cut(s)	1451
BshFI	GGCC	2 cut(s)	170, 228
BshNI	GGYRCC	2 cut(s)	247, 958
BshTI	ACCGGT	1 cut(s)	44
BsiHKAI	GWGCWC	3 cut(s)	332, 606, 1459
BsiSI	CCGG	5 cut(s)	45, 225, 347, 431, 465
BslFI	GGGAC	1 cut(s)	1770
BslI	CCNNNNNNNGG	5 cut(s)	51, 753, 867, 1181, 1458
BsmAI	GTCTC	5 cut(s)	546, 1048, 1179, 1676, 1753
BsmBI	CGTCTC	2 cut(s)	1048, 1179
BsmFI	GGGAC	1 cut(s)	1770
BsmI	GAATGC	3 cut(s)	80, 1408, 1421
BsnI	GGCC	2 cut(s)	170, 228
Bsp119I	TTCGAA	1 cut(s)	1422
Bsp1286I	GDGCHC	4 cut(s)	332, 606, 1451, 1459
Bsp13I	TCCGGA	1 cut(s)	464
Bsp143I	GATC	8 cut(s)	90, 521, 637, 784, 976, 1435, 1480, 1519
BspACI	CCGC	3 cut(s)	104, 195, 1345
BspANI	GGCC	2 cut(s)	170, 228
BspCNI	CTCAG	2 cut(s)	223, 1720
BspEI	TCCGGA	1 cut(s)	464
BspLI	GGNNCC	2 cut(s)	249, 960
BspOI	GCTAGC	1 cut(s)	849
BspPI	GGATC	5 cut(s)	529, 971, 1443, 1475, 1527
BspQI	GCTCTTC	1 cut(s)	320
BspT104I	TTCGAA	1 cut(s)	1422
BspT107I	GGYRCC	2 cut(s)	247, 958
BsrFI	RCCGGY	2 cut(s)	44, 224
BsrI	ACTGG	3 cut(s)	1092, 1666, 1786
BssAI	RCCGGY	2 cut(s)	44, 224
BssECI	CCNNGG	2 cut(s)	747, 1256
BssMI	GATC	8 cut(s)	90, 521, 637, 784, 976, 1435, 1480, 1519
BssNI	GRCGYC	3 cut(s)	248, 254, 959
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	1 cut(s)	1257
Bst4CI	ACNGT	5 cut(s)	98, 968, 1032, 1576, 1639
Bst6I	CTCTTC	4 cut(s)	320, 567, 1088, 1302
BstACI	GRCGYC	3 cut(s)	248, 254, 959
BstBI	TTCGAA	1 cut(s)	1422
BstC8I	GCNNGC	2 cut(s)	226, 847
BstDEI	CTNAG	5 cut(s)	231, 298, 529, 1350, 1728
BstH2I	RGCGCY	4 cut(s)	251, 852, 962, 1241
BstHHI	GCGC	6 cut(s)	250, 851, 873, 961, 988, 1240
BstKTI	GATC	8 cut(s)	93, 524, 640, 787, 979, 1438, 1483, 1522
BstMAI	GTCTC	5 cut(s)	546, 1048, 1179, 1676, 1753
BstMBI	GATC	8 cut(s)	90, 521, 637, 784, 976, 1435, 1480, 1519
BstMWI	GCNNNNNNNGC	1 cut(s)	1252
BstNI	CCWGG	1 cut(s)	1257
BstSCI	CCNGG	2 cut(s)	345, 1255
BstSLI	GKGCMC	1 cut(s)	1451
BstV2I	GAAGAC	2 cut(s)	92, 1347
BstX2I	RGATCY	3 cut(s)	521, 1435, 1519
BstYI	RGATCY	3 cut(s)	521, 1435, 1519
BsuRI	GGCC	2 cut(s)	170, 228
BtrI	CACGTC	1 cut(s)	220
BtsI	GCAGTG	2 cut(s)	163, 1613
BtsIMutI	CAGTG	4 cut(s)	163, 1028, 1613, 1779
Cac8I	GCNNGC	2 cut(s)	226, 847
CaiI	CAGNNNCTG	1 cut(s)	277
CfoI	GCGC	6 cut(s)	250, 851, 873, 961, 988, 1240
Cfr10I	RCCGGY	2 cut(s)	44, 224
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	1766, 1802
CspAI	ACCGGT	1 cut(s)	44
CviAII	CATG	1 cut(s)	641
CviQI	GTAC	2 cut(s)	1766, 1802
DdeI	CTNAG	5 cut(s)	231, 298, 529, 1350, 1728
DinI	GGCGCC	2 cut(s)	249, 960
DpnI	GATC	8 cut(s)	92, 523, 639, 786, 978, 1437, 1482, 1521
DpnII	GATC	8 cut(s)	90, 521, 637, 784, 976, 1435, 1480, 1519
DraIII	CACNNNGTG	1 cut(s)	968
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	4 cut(s)	320, 567, 1088, 1302
EarI	CTCTTC	4 cut(s)	320, 567, 1088, 1302
Ecl136II	GAGCTC	3 cut(s)	330, 604, 1457
Eco130I	CCWWGG	1 cut(s)	747
Eco24I	GRGCYC	3 cut(s)	332, 606, 1459
Eco32I	GATATC	1 cut(s)	115
Eco47III	AGCGCT	1 cut(s)	850
Eco53kI	GAGCTC	3 cut(s)	330, 604, 1457
Eco57I	CTGAAG	4 cut(s)	426, 492, 726, 1514
EcoICRI	GAGCTC	3 cut(s)	330, 604, 1457
EcoRI	GAATTC	1 cut(s)	1289
EcoRII	CCWGG	1 cut(s)	1255
EcoRV	GATATC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	747
EcoT38I	GRGCYC	3 cut(s)	332, 606, 1459
EgeI	GGCGCC	2 cut(s)	249, 960
EheI	GGCGCC	2 cut(s)	249, 960
ErhI	CCWWGG	1 cut(s)	747
Esp3I	CGTCTC	2 cut(s)	1048, 1179
FaeI	CATG	1 cut(s)	644
FalI	AAGNNNNNCTT	6 cut(s)	1403, 1435, 1752, 1784, 1809, 1841
FaqI	GGGAC	1 cut(s)	1770
FatI	CATG	1 cut(s)	640
FauI	CCCGC	1 cut(s)	202
FauNDI	CATATG	3 cut(s)	982, 1396, 1705
FbaI	TGATCA	1 cut(s)	637
FblI	GTMKAC	1 cut(s)	441
FriOI	GRGCYC	3 cut(s)	332, 606, 1459
FspBI	CTAG	3 cut(s)	846, 1134, 1550
GlaI	GCGC	6 cut(s)	249, 850, 872, 960, 987, 1239
GsuI	CTGGAG	1 cut(s)	1269
HaeII	RGCGCY	4 cut(s)	251, 852, 962, 1241
HaeIII	GGCC	2 cut(s)	170, 228
HapII	CCGG	5 cut(s)	45, 225, 347, 431, 465
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	6 cut(s)	250, 851, 873, 961, 988, 1240
Hin1I	GRCGYC	3 cut(s)	248, 254, 959
Hin1II	CATG	1 cut(s)	644
Hin6I	GCGC	6 cut(s)	248, 849, 871, 959, 986, 1238
HinP1I	GCGC	6 cut(s)	248, 849, 871, 959, 986, 1238
HpaII	CCGG	5 cut(s)	45, 225, 347, 431, 465
HphI	GGTGA	9 cut(s)	40, 251, 328, 361, 527, 611, 980, 1102, 1874
Hpy166II	GTNNAC	4 cut(s)	442, 457, 1085, 1371
Hpy8I	GTNNAC	4 cut(s)	442, 457, 1085, 1371
Hpy99I	CGWCG	4 cut(s)	98, 122, 224, 256
HpyAV	CCTTC	8 cut(s)	307, 373, 512, 805, 944, 1077, 1111, 1958
HpyCH4III	ACNGT	5 cut(s)	98, 968, 1032, 1576, 1639
HpyCH4IV	ACGT	2 cut(s)	219, 1468
HpyCH4V	TGCA	5 cut(s)	58, 78, 156, 1394, 1616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1252
HpyF3I	CTNAG	5 cut(s)	231, 298, 529, 1350, 1728
HpySE526I	ACGT	2 cut(s)	219, 1468
Hsp92I	GRCGYC	3 cut(s)	248, 254, 959
Hsp92II	CATG	1 cut(s)	644
HspAI	GCGC	6 cut(s)	248, 849, 871, 959, 986, 1238
KasI	GGCGCC	2 cut(s)	247, 958
Kpn2I	TCCGGA	1 cut(s)	464
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	8 cut(s)	90, 521, 637, 784, 976, 1435, 1480, 1519
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	467, 724
LweI	GCATC	5 cut(s)	143, 1033, 1306, 1395, 1625
MaeI	CTAG	3 cut(s)	846, 1134, 1550
MaeII	ACGT	2 cut(s)	219, 1468
MaeIII	GTNAC	6 cut(s)	158, 910, 968, 1562, 1576, 1699
MalI	GATC	8 cut(s)	92, 523, 639, 786, 978, 1437, 1482, 1521
MboI	GATC	8 cut(s)	90, 521, 637, 784, 976, 1435, 1480, 1519
MfeI	CAATTG	2 cut(s)	633, 732
MflI	RGATCY	3 cut(s)	521, 1435, 1519
MhlI	GDGCHC	4 cut(s)	332, 606, 1451, 1459
Mly113I	GGCGCC	2 cut(s)	248, 959
MlyI	GAGTC	7 cut(s)	155, 437, 493, 554, 1010, 1184, 1277
MmeI	TCCRAC	1 cut(s)	111
MroI	TCCGGA	1 cut(s)	464
MroNI	GCCGGC	1 cut(s)	224
MroXI	GAANNNNTTC	1 cut(s)	1892
MseI	TTAA	6 cut(s)	147, 804, 1124, 1128, 1328, 1410
MslI	CAYNNNNRTG	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	1832
MspI	CCGG	5 cut(s)	45, 225, 347, 431, 465
MspR9I	CCNGG	2 cut(s)	347, 1257
MunI	CAATTG	2 cut(s)	633, 732
Mva1269I	GAATGC	3 cut(s)	80, 1408, 1421
MvaI	CCWGG	1 cut(s)	1257
MwoI	GCNNNNNNNGC	1 cut(s)	1252
NaeI	GCCGGC	1 cut(s)	226
NarI	GGCGCC	2 cut(s)	248, 959
NciI	CCSGG	1 cut(s)	347
NdeI	CATATG	3 cut(s)	982, 1396, 1705
NdeII	GATC	8 cut(s)	90, 521, 637, 784, 976, 1435, 1480, 1519
NgoMIV	GCCGGC	1 cut(s)	224
NheI	GCTAGC	1 cut(s)	845
NlaIII	CATG	1 cut(s)	644
NlaIV	GGNNCC	2 cut(s)	249, 960
NmuCI	GTSAC	5 cut(s)	158, 910, 968, 1562, 1699
NspV	TTCGAA	1 cut(s)	1422
PacI	TTAATTAA	1 cut(s)	1128
PciSI	GCTCTTC	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 1465
PctI	GAATGC	3 cut(s)	80, 1408, 1421
PdiI	GCCGGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	1892
PfeI	GAWTC	9 cut(s)	400, 449, 461, 698, 857, 1059, 1487, 1717, 1961
PflMI	CCANNNNNTGG	1 cut(s)	867
PinAI	ACCGGT	1 cut(s)	44
PleI	GAGTC	7 cut(s)	155, 437, 492, 554, 1010, 1184, 1276
PluTI	GGCGCC	2 cut(s)	251, 962
PpsI	GAGTC	7 cut(s)	155, 437, 492, 554, 1010, 1184, 1276
Psp124BI	GAGCTC	3 cut(s)	332, 606, 1459
Psp6I	CCWGG	1 cut(s)	1255
PspGI	CCWGG	1 cut(s)	1255
PspN4I	GGNNCC	2 cut(s)	249, 960
PspPI	GGNCC	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	3 cut(s)	521, 1435, 1519
PvuII	CAGCTG	1 cut(s)	1832
RsaI	GTAC	2 cut(s)	1767, 1803
RsaNI	GTAC	2 cut(s)	1766, 1802
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	3 cut(s)	332, 606, 1459
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	6 cut(s)	147, 804, 1124, 1128, 1328, 1410
Sau3AI	GATC	8 cut(s)	90, 521, 637, 784, 976, 1435, 1480, 1519
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	7 cut(s)	155, 437, 493, 554, 1010, 1184, 1277
ScrFI	CCNGG	2 cut(s)	347, 1257
SduI	GDGCHC	4 cut(s)	332, 606, 1451, 1459
SfaNI	GCATC	5 cut(s)	143, 1033, 1306, 1395, 1625
SfoI	GGCGCC	2 cut(s)	249, 960
SfuI	TTCGAA	1 cut(s)	1422
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	2 cut(s)	497, 1523
SmoI	CTYRAG	2 cut(s)	497, 1523
SsiI	CCGC	3 cut(s)	104, 195, 1345
SspDI	GGCGCC	2 cut(s)	247, 958
SspI	AATATT	1 cut(s)	1477
SspMI	CTAG	3 cut(s)	846, 1134, 1550
SstI	GAGCTC	3 cut(s)	332, 606, 1459
StyD4I	CCNGG	2 cut(s)	345, 1255
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	5 cut(s)	98, 968, 1032, 1576, 1639
TaiI	ACGT	2 cut(s)	222, 1471
TaqI	TCGA	7 cut(s)	10, 93, 111, 117, 687, 724, 1422
TatI	WGTACW	2 cut(s)	1765, 1801
TfiI	GAWTC	9 cut(s)	400, 449, 461, 698, 857, 1059, 1487, 1717, 1961
Tru1I	TTAA	6 cut(s)	147, 804, 1124, 1128, 1328, 1410
Tru9I	TTAA	6 cut(s)	147, 804, 1124, 1128, 1328, 1410
TscAI	CASTG	4 cut(s)	163, 1035, 1613, 1786
TseFI	GTSAC	5 cut(s)	158, 910, 968, 1562, 1699
Tsp45I	GTSAC	5 cut(s)	158, 910, 968, 1562, 1699
TspGWI	ACGGA	2 cut(s)	1217, 1726
TspRI	CASTG	4 cut(s)	163, 1035, 1613, 1786
Van91I	CCANNNNNTGG	1 cut(s)	867
XapI	RAATTY	2 cut(s)	875, 1289
XbaI	TCTAGA	1 cut(s)	1549
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	1892
XspI	CTAG	3 cut(s)	846, 1134, 1550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.