Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Forward (+)

65870946 .. 65876281

Gene Structure 5336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G042200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGTGGATACGTAATTACGTAAATAAACTGGATACGTGGGGGTACATTTGGGTTTTTACCCTTAAAAAAAAAAAACAAAAACAGAAGACTACAGATCGACCTAACTCACCGCCGCTTCGCTTAATCGATCGTTCACTCGTTCCTCTCTTCTCATCTTCTTCGCAAGATTATCCATCAATCAGAGACACAGACTCGGAAGATGAAGAGAGTGGTTCCTCTGAAAATGAGGGTGAGCTCAACACCAGCAGAAATGATGGTTTGGCCATTGATCATGGTAATGAGGAGGAAAGTGATAGTTCTGGACTTCATGAAGCAGTCGAGGAAAGTGATTCATCTGAAGATGAGGTTGCTCCCCGAAATACAATTGGTGCTGTTCCCTTGGAGTGGTATCGGGATGAGAAACATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAGAAGGAAAGAGAAGATAAATTACAATCCTTTCTTGCTAGTGCTGATGATTCCAAAAATTGGCGCAAATTTTTGGATGAATACAATGACGAGGAAGTAGAAGTGACAAAAGAAGATATGAAAACTATAAATAGATTGCTTGAAGGAAAGGCGCCACACGGTGACTTTGATCCATATGCGCCTTATGTTGATTGGTTTAAATGGGATGACTCAAAGCATCCACTGTCAAATGCCCCTGAACCCAAGAGACGATTCATTCCTTCAAAATCTGAAAGTAAACTGGTGAAGAGGTTAGTATTAGCAATTCGGAAGGGTTTAATTAAGCCTACAAAGGATGAAGAAGAGGAAGAAGAAAGTGTTTATCCCTTGTGGGGAGACGACTCTAATTCAACGGAAAAGGATGGTAGCCATTTATCTTACATTCCAGCGCCAAAGCCAAAATTGCCAGGGTATGAGGAGTCCTTCAATCCTCCTCCGGAATTCATCCCAACACAAGAAGAGATTGATGCTTATCAGTTAATGTATGAGGAAGACCGCCCTAAGTTTATACCGAAAAGGTTTACATCTATGAGAAGCATCCCTGCATATGAGAATGCTATTAAGGAGTGCTTCGAAAGATGTTTGGATCTATACTTGTGCCCCAGAGTTCGGAAGAAACGTATCAATATTGATCCTGAATCTCTGAAGCCCAAGCTACCAAGCCGAAAGGATCTCAAGCCTTATCCTGTGAAATGTTATCTAGAGTATAGAGGTCACAAAGACACAGTTACATCAGTTTCCACAGAAGCTTCAGGGCAGTGGATTGCATCAGGTTCATCGGATGGAACTGTGCGTATTTGGGAGGTTGAAACTGGTAGATGTCTCAAACTCTGGGAGATTGGAGAAGCTGTCACATATGTAGCTTGGAATCCCAATCCTGAGTATTCCGTATTGGCTGTCTCTGTGGGACAAGATGTACTTATTCTCAACACTGGTTTTGGGAATGAAGAAGTACAGAAAAAAACTAAAGAACTTCTTTCGGCTGAAAGACCTACCACACCAGATGACACGGCTACCTTCGTGAGCTGGATTCAAGATGAAACACATGAGGGCACCAGGTTAAGACATTTTAAGACTGTGTCTTCAGTGGAATGGCATCGTAGAGGAGACTACTTTTCAACGGTGGTGCCAGCAGATATCCTTTTTACTTTACGCCAATCGAAATCAATTTTTATGCATAGGCTCTCTCAGAAGTCTACCCAGACATTTTCAATCAAGTTGGGTGGGCTTGCAGTTACTTCAGTTTTCCATCCTGTTCGCTCCCACATCTTCATTTCTACAAAGAAAACTATTCGCCAATATGATTTGGTGAAGGGAAAGCAAATCAGAAAGCTTGATACAGGACTAAAAGAAATCTCCTCCATTGCAGTTCATCCTTCTGGTGATCATGTAATTGTGGGGAGCAGAGAAGGAAAATTTTGTTGGTTTGATATGGACCTTTCAACCAAAAAACCTTACCTTATTCGCCAGTGGCATAAGAAGGACATCAACAATGTGTCTATCCATCGTTTATATCCGTTGTTTGCAACATGCTCTGATGATTGCACTGTACAAGTTTCTCATGGCATGGTTTATTCAGATCTTAACCAGAACCCTCTTATAGTTCCACTGGAAATACTCCGAGGTCATGCAAGCTCAGATGGGAGAGGTGTAATGGATTGCAAATTCCACCCAAGGCAGCCCTGGTTGTTCACGGCCGGTGCTGACTCGGTGATCAGACTTTACTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

736

Amino Acids

84.46

Weight (kDa)

6.06

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	130 - 388	3.9e-100	BOP1NT (NUC169) domain
WD40_CDC20-Fz	PF24807	385 - 460	3.4e-06	CDC20/Fizzy WD40 domain
WD40	PF00400	390 - 426	9.9e-10	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	391 - 470	1.2e-12	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	393 - 464	4.6e-08	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	393 - 475	1.1e-10	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	393 - 527	3.3e-11	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	394 - 455	1.2e-06	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	395 - 457	4.7e-06	Prp19 WD40 domain
EIF3I	PF24805	395 - 464	5.1e-09	EIF3I
Beta-prop_WDR36-Utp21_1st	PF25171	512 - 734	3.4e-06	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	517 - 734	1.2e-11	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	550 - 683	1.6e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	583 - 734	2.2e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	584 - 678	3.2e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	588 - 734	1e-08	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	609 - 734	1.4e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	589, 1529, 1603
AccB7I	CCANNNNNTGG	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	1673
AccIII	TCCGGA	1 cut(s)	913
AciI	CCGC	3 cut(s)	110, 113, 973
AclWI	GGATC	4 cut(s)	602, 1071, 1103, 1155
AcoI	YGGCCR	2 cut(s)	261, 2172
AcsI	RAATTY	4 cut(s)	506, 917, 1892, 2141
AcuI	CTGAAG	5 cut(s)	357, 1142, 1212, 1545, 1701
AcyI	GRCGYC	1 cut(s)	590
AdeI	CACNNNGTG	1 cut(s)	599
AfaI	GTAC	4 cut(s)	44, 1395, 1431, 2028
AfiI	CCNNNNNNNGG	4 cut(s)	384, 498, 809, 1086
AgsI	TTSAA	9 cut(s)	581, 702, 828, 904, 1286, 1511, 1596, 1689, 1920
AjnI	CCWGG	3 cut(s)	883, 1532, 2159
AjuI	GAANNNNNNNTTGG	4 cut(s)	674, 706, 1882, 1914
AluBI	AGCT	8 cut(s)	235, 1132, 1226, 1325, 1340, 1503, 1810, 2112
AluI	AGCT	8 cut(s)	235, 1132, 1226, 1325, 1340, 1503, 1810, 2112
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	6 cut(s)	177, 679, 807, 1304, 1381, 1578
AlwI	GGATC	4 cut(s)	602, 1071, 1103, 1155
Aor13HI	TCCGGA	1 cut(s)	913
AoxI	GGCC	2 cut(s)	261, 2172
ApeKI	GCWGC	1 cut(s)	2155
ApoI	RAATTY	4 cut(s)	506, 917, 1892, 2141
AspLEI	GCGC	4 cut(s)	504, 592, 619, 868
AspS9I	GGNCC	1 cut(s)	1912
AsuHPI	GGTGA	7 cut(s)	99, 242, 611, 733, 1798, 1871, 2200
AsuII	TTCGAA	1 cut(s)	1050
AvaII	GGWCC	1 cut(s)	1912
BaeGI	GKGCMC	2 cut(s)	1079, 1532
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	3 cut(s)	589, 1529, 1603
BanII	GRGCYC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BbsI	GAAGAC	3 cut(s)	92, 975, 1551
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	2167
BccI	CCATC	7 cut(s)	181, 248, 833, 1253, 1734, 1989, 2111
BceAI	ACGGC	2 cut(s)	1503, 2187
BciT130I	CCWGG	3 cut(s)	885, 1534, 2161
BciVI	GTATCC	1 cut(s)	25
BclI	TGATCA	3 cut(s)	268, 1861, 2190
BcoDI	GTCTC	6 cut(s)	177, 679, 807, 1304, 1381, 1578
BfaI	CTAG	2 cut(s)	477, 1178
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	2 cut(s)	593, 869
BfuI	GTATCC	1 cut(s)	25
BglII	AGATCT	1 cut(s)	2056
BisI	GCNGC	2 cut(s)	113, 2156
BlsI	GCNGC	2 cut(s)	114, 2157
Bme1390I	CCNGG	3 cut(s)	885, 1534, 2161
Bme18I	GGWCC	1 cut(s)	1912
BmgT120I	GGNCC	1 cut(s)	1912
BmiI	GGNNCC	4 cut(s)	214, 591, 1531, 1605
BmrFI	CCNGG	3 cut(s)	885, 1534, 2161
BmsI	GCATC	5 cut(s)	664, 934, 1023, 1253, 1582
BpiI	GAAGAC	3 cut(s)	92, 975, 1551
Bpu14I	TTCGAA	1 cut(s)	1050
BpuEI	CTTGAG	1 cut(s)	1136
Bsa29I	ATCGAT	1 cut(s)	126
BsaAI	YACGTR	3 cut(s)	11, 19, 36
BsaBI	GATNNNNATC	1 cut(s)	948
BsaHI	GRCGYC	1 cut(s)	590
BsaJI	CCNNGG	5 cut(s)	378, 884, 2098, 2150, 2159
BsaWI	WCCGGW	1 cut(s)	913
BsaXI	ACNNNNNCTCC	2 cut(s)	1311, 1341
Bsc4I	CCNNNNNNNGG	4 cut(s)	384, 498, 809, 1086
Bse118I	RCCGGY	1 cut(s)	2174
Bse1I	ACTGG	6 cut(s)	33, 723, 1294, 1414, 1945, 2091
Bse3DI	GCAATG	1 cut(s)	1839
Bse8I	GATNNNNATC	1 cut(s)	948
BseAI	TCCGGA	1 cut(s)	913
BseBI	CCWGG	3 cut(s)	885, 1534, 2161
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	5 cut(s)	378, 884, 2098, 2150, 2159
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	4 cut(s)	384, 498, 809, 1086
BseMI	GCAATG	1 cut(s)	1839
BseMII	CTCAG	3 cut(s)	1347, 1679, 2127
BseNI	ACTGG	6 cut(s)	33, 723, 1294, 1414, 1945, 2091
BseRI	GAGGAG	5 cut(s)	296, 900, 908, 1596, 1825
BseSI	GKGCMC	2 cut(s)	1079, 1532
BseX3I	CGGCCG	1 cut(s)	2172
BseXI	GCAGC	1 cut(s)	2167
Bsh1285I	CGRYCG	2 cut(s)	130, 2175
BshFI	GGCC	2 cut(s)	263, 2174
BshNI	GGYRCC	3 cut(s)	589, 1529, 1603
BshVI	ATCGAT	1 cut(s)	126
BsiEI	CGRYCG	2 cut(s)	130, 2175
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	914, 2175
BslFI	GGGAC	1 cut(s)	1398
BslI	CCNNNNNNNGG	4 cut(s)	384, 498, 809, 1086
BsmAI	GTCTC	6 cut(s)	177, 679, 807, 1304, 1381, 1578
BsmBI	CGTCTC	2 cut(s)	679, 807
BsmFI	GGGAC	1 cut(s)	1398
BsmI	GAATGC	1 cut(s)	1036
BsnI	GGCC	2 cut(s)	263, 2174
Bsp119I	TTCGAA	1 cut(s)	1050
Bsp1286I	GDGCHC	3 cut(s)	237, 1079, 1532
Bsp13I	TCCGGA	1 cut(s)	913
Bsp1407I	TGTACA	1 cut(s)	2026
BspACI	CCGC	3 cut(s)	110, 113, 973
BspANI	GGCC	2 cut(s)	263, 2174
BspCNI	CTCAG	3 cut(s)	1348, 1678, 2126
BspDI	ATCGAT	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	913
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	4 cut(s)	214, 591, 1531, 1605
BspPI	GGATC	4 cut(s)	602, 1071, 1103, 1155
BspT104I	TTCGAA	1 cut(s)	1050
BspT107I	GGYRCC	3 cut(s)	589, 1529, 1603
BsrDI	GCAATG	1 cut(s)	1839
BsrFI	RCCGGY	1 cut(s)	2174
BsrGI	TGTACA	1 cut(s)	2026
BsrI	ACTGG	6 cut(s)	33, 723, 1294, 1414, 1945, 2091
BssAI	RCCGGY	1 cut(s)	2174
BssECI	CCNNGG	5 cut(s)	378, 884, 2098, 2150, 2159
BssNI	GRCGYC	1 cut(s)	590
BssT1I	CCWWGG	2 cut(s)	378, 2150
Bst2UI	CCWGG	3 cut(s)	885, 1534, 2161
Bst4CI	ACNGT	7 cut(s)	599, 663, 1204, 1267, 1555, 1600, 2026
Bst6I	CTCTTC	5 cut(s)	152, 198, 719, 774, 930
BstACI	GRCGYC	1 cut(s)	590
BstAUI	TGTACA	1 cut(s)	2026
BstBAI	YACGTR	3 cut(s)	11, 19, 36
BstBI	TTCGAA	1 cut(s)	1050
BstC8I	GCNNGC	3 cut(s)	1608, 1707, 2110
BstDEI	CTNAG	4 cut(s)	978, 1356, 1665, 2113
BstH2I	RGCGCY	2 cut(s)	593, 869
BstHHI	GCGC	4 cut(s)	504, 592, 619, 868
BstMAI	GTCTC	6 cut(s)	177, 679, 807, 1304, 1381, 1578
BstMCI	CGRYCG	2 cut(s)	130, 2175
BstMWI	GCNNNNNNNGC	1 cut(s)	880
BstNI	CCWGG	3 cut(s)	885, 1534, 2161
BstNSI	RCATGY	1 cut(s)	2010
BstSCI	CCNGG	3 cut(s)	883, 1532, 2159
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	2 cut(s)	1079, 1532
BstSNI	TACGTA	2 cut(s)	11, 19
BstV1I	GCAGC	1 cut(s)	2167
BstV2I	GAAGAC	3 cut(s)	92, 975, 1551
BstX2I	RGATCY	3 cut(s)	1063, 1147, 2056
BstYI	RGATCY	3 cut(s)	1063, 1147, 2056
BstZI	CGGCCG	1 cut(s)	2172
Bsu15I	ATCGAT	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	263, 2174
BsuTUI	ATCGAT	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	1241
BtsIMutI	CAGTG	7 cut(s)	659, 1241, 1407, 1569, 1952, 2022, 2084
Cac8I	GCNNGC	3 cut(s)	1608, 1707, 2110
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	4 cut(s)	504, 592, 619, 868
Cfr10I	RCCGGY	1 cut(s)	2174
Cfr13I	GGNCC	1 cut(s)	1912
ClaI	ATCGAT	1 cut(s)	126
CsiI	ACCWGGT	1 cut(s)	1532
Csp6I	GTAC	4 cut(s)	43, 1394, 1430, 2027
CspCI	CAANNNNNGTGG	2 cut(s)	1681, 1716
CviAII	CATG	8 cut(s)	272, 308, 1523, 1865, 2007, 2039, 2044, 2105
CviQI	GTAC	4 cut(s)	43, 1394, 1430, 2027
DdeI	CTNAG	4 cut(s)	978, 1356, 1665, 2113
DinI	GGCGCC	1 cut(s)	591
DraI	TTTAAA	1 cut(s)	637
DraIII	CACNNNGTG	1 cut(s)	599
EaeI	YGGCCR	2 cut(s)	261, 2172
EagI	CGGCCG	1 cut(s)	2172
Eam1104I	CTCTTC	5 cut(s)	152, 198, 719, 774, 930
EarI	CTCTTC	5 cut(s)	152, 198, 719, 774, 930
Ecl136II	GAGCTC	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	2172
Eco105I	TACGTA	2 cut(s)	11, 19
Eco130I	CCWWGG	2 cut(s)	378, 2150
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	1615
Eco47I	GGWCC	1 cut(s)	1912
Eco52I	CGGCCG	1 cut(s)	2172
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	5 cut(s)	357, 1142, 1212, 1545, 1701
EcoICRI	GAGCTC	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	917
EcoRII	CCWGG	3 cut(s)	883, 1532, 2159
EcoRV	GATATC	1 cut(s)	1615
EcoT14I	CCWWGG	2 cut(s)	378, 2150
EcoT22I	ATGCAT	1 cut(s)	1656
EcoT38I	GRGCYC	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	591
EheI	GGCGCC	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	378, 2150
Esp3I	CGTCTC	2 cut(s)	679, 807
FaeI	CATG	8 cut(s)	275, 311, 1526, 1868, 2010, 2042, 2047, 2108
FalI	AAGNNNNNCTT	6 cut(s)	1031, 1063, 1380, 1412, 1437, 1469
FaqI	GGGAC	1 cut(s)	1398
FatI	CATG	8 cut(s)	271, 307, 1522, 1864, 2006, 2038, 2043, 2104
FauNDI	CATATG	3 cut(s)	613, 1024, 1333
FbaI	TGATCA	3 cut(s)	268, 1861, 2190
FblI	GTMKAC	1 cut(s)	1673
Fnu4HI	GCNGC	2 cut(s)	113, 2156
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	113, 2156
FspBI	CTAG	2 cut(s)	477, 1178
GlaI	GCGC	4 cut(s)	503, 591, 618, 867
GluI	GCNGC	2 cut(s)	113, 2156
HaeII	RGCGCY	2 cut(s)	593, 869
HaeIII	GGCC	2 cut(s)	263, 2174
HapII	CCGG	2 cut(s)	914, 2175
HhaI	GCGC	4 cut(s)	504, 592, 619, 868
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	8 cut(s)	275, 311, 1526, 1868, 2010, 2042, 2047, 2108
Hin6I	GCGC	4 cut(s)	502, 590, 617, 866
HinP1I	GCGC	4 cut(s)	502, 590, 617, 866
HindIII	AAGCTT	2 cut(s)	1224, 1808
HpaII	CCGG	2 cut(s)	914, 2175
HphI	GGTGA	7 cut(s)	99, 242, 611, 733, 1798, 1871, 2200
Hpy166II	GTNNAC	5 cut(s)	134, 716, 999, 1674, 2169
Hpy188III	TCNNGA	9 cut(s)	300, 308, 392, 914, 1112, 1178, 1355, 1498, 1511
Hpy8I	GTNNAC	5 cut(s)	134, 716, 999, 1674, 2169
HpyCH4III	ACNGT	7 cut(s)	599, 663, 1204, 1267, 1555, 1600, 2026
HpyCH4IV	ACGT	4 cut(s)	10, 18, 35, 1096
HpyCH4V	TGCA	9 cut(s)	1022, 1244, 1654, 1709, 1844, 2003, 2022, 2108, 2139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	880
HpyF3I	CTNAG	4 cut(s)	978, 1356, 1665, 2113
HpySE526I	ACGT	4 cut(s)	10, 18, 35, 1096
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	8 cut(s)	275, 311, 1526, 1868, 2010, 2042, 2047, 2108
HspAI	GCGC	4 cut(s)	502, 590, 617, 866
KasI	GGCGCC	1 cut(s)	589
Kpn2I	TCCGGA	1 cut(s)	913
Ksp22I	TGATCA	3 cut(s)	268, 1861, 2190
LmnI	GCTCC	3 cut(s)	355, 1742, 1878
Lsp1109I	GCAGC	1 cut(s)	2167
LweI	GCATC	5 cut(s)	664, 934, 1023, 1253, 1582
MabI	ACCWGGT	1 cut(s)	1532
MaeI	CTAG	2 cut(s)	477, 1178
MaeII	ACGT	4 cut(s)	10, 18, 35, 1096
MaeIII	GTNAC	6 cut(s)	541, 599, 1190, 1204, 1327, 1711
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	3 cut(s)	1063, 1147, 2056
MhlI	GDGCHC	3 cut(s)	237, 1079, 1532
MlsI	TGGCCA	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	263
Mly113I	GGCGCC	1 cut(s)	590
MlyI	GAGTC	5 cut(s)	185, 641, 812, 905, 2177
Mox20I	TGGCCA	1 cut(s)	263
Mph1103I	ATGCAT	1 cut(s)	1656
MroI	TCCGGA	1 cut(s)	913
MscI	TGGCCA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	263
MspI	CCGG	2 cut(s)	914, 2175
MspR9I	CCNGG	3 cut(s)	885, 1534, 2161
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	1036
MvaI	CCWGG	3 cut(s)	885, 1534, 2161
MwoI	GCNNNNNNNGC	1 cut(s)	880
NarI	GGCGCC	1 cut(s)	590
NdeI	CATATG	3 cut(s)	613, 1024, 1333
NlaIII	CATG	8 cut(s)	275, 311, 1526, 1868, 2010, 2042, 2047, 2108
NlaIV	GGNNCC	4 cut(s)	214, 591, 1531, 1605
NmuCI	GTSAC	4 cut(s)	541, 599, 1190, 1327
NsiI	ATGCAT	1 cut(s)	1656
NspI	RCATGY	1 cut(s)	2010
NspV	TTCGAA	1 cut(s)	1050
PacI	TTAATTAA	1 cut(s)	759
PagI	TCATGA	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	1093
PctI	GAATGC	1 cut(s)	1036
PfeI	GAWTC	6 cut(s)	329, 488, 690, 1115, 1345, 1507
PflFI	GACNNNGTC	1 cut(s)	1555
PflMI	CCANNNNNTGG	1 cut(s)	498
PkrI	GCNGC	2 cut(s)	114, 2157
Ple19I	CGATCG	1 cut(s)	130
PleI	GAGTC	5 cut(s)	185, 641, 812, 904, 2177
PluTI	GGCGCC	1 cut(s)	593
PpsI	GAGTC	5 cut(s)	185, 641, 812, 904, 2177
Ppu21I	YACGTR	3 cut(s)	11, 19, 36
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	3 cut(s)	883, 1532, 2159
PspGI	CCWGG	3 cut(s)	883, 1532, 2159
PspN4I	GGNNCC	4 cut(s)	214, 591, 1531, 1605
PspPI	GGNCC	1 cut(s)	1912
PsuI	RGATCY	3 cut(s)	1063, 1147, 2056
PsyI	GACNNNGTC	1 cut(s)	1555
PvuI	CGATCG	1 cut(s)	130
RsaI	GTAC	4 cut(s)	44, 1395, 1431, 2028
RsaNI	GTAC	4 cut(s)	43, 1394, 1430, 2027
RseI	CAYNNNNRTG	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	237
SatI	GCNGC	2 cut(s)	113, 2156
Sau96I	GGNCC	1 cut(s)	1912
SchI	GAGTC	5 cut(s)	185, 641, 812, 905, 2177
ScrFI	CCNGG	3 cut(s)	885, 1534, 2161
SduI	GDGCHC	3 cut(s)	237, 1079, 1532
SexAI	ACCWGGT	1 cut(s)	1532
SfaNI	GCATC	5 cut(s)	664, 934, 1023, 1253, 1582
SfcI	CTRYAG	1 cut(s)	90
SfoI	GGCGCC	1 cut(s)	591
SfuI	TTCGAA	1 cut(s)	1050
SinI	GGWCC	1 cut(s)	1912
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	1151
SmoI	CTYRAG	1 cut(s)	1151
SnaBI	TACGTA	2 cut(s)	11, 19
SsiI	CCGC	3 cut(s)	110, 113, 973
SspDI	GGCGCC	1 cut(s)	589
SspI	AATATT	1 cut(s)	1105
SspMI	CTAG	2 cut(s)	477, 1178
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	3 cut(s)	883, 1532, 2159
StyI	CCWWGG	2 cut(s)	378, 2150
TaaI	ACNGT	7 cut(s)	599, 663, 1204, 1267, 1555, 1600, 2026
TaiI	ACGT	4 cut(s)	13, 21, 38, 1099
TaqI	TCGA	5 cut(s)	97, 126, 318, 1050, 1637
TatI	WGTACW	3 cut(s)	1393, 1429, 2026
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	6 cut(s)	329, 488, 690, 1115, 1345, 1507
TscAI	CASTG	7 cut(s)	666, 1241, 1414, 1569, 1952, 2029, 2091
TseFI	GTSAC	4 cut(s)	541, 599, 1190, 1327
TseI	GCWGC	1 cut(s)	2155
Tsp45I	GTSAC	4 cut(s)	541, 599, 1190, 1327
TspGWI	ACGGA	3 cut(s)	845, 1354, 1983
TspRI	CASTG	7 cut(s)	666, 1241, 1414, 1569, 1952, 2029, 2091
Tth111I	GACNNNGTC	1 cut(s)	1555
Van91I	CCANNNNNTGG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	1912
XapI	RAATTY	4 cut(s)	506, 917, 1892, 2141
XbaI	TCTAGA	1 cut(s)	1177
XceI	RCATGY	1 cut(s)	2010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2157
XmiI	GTMKAC	1 cut(s)	1673
XspI	CTAG	2 cut(s)	477, 1178
Zsp2I	ATGCAT	1 cut(s)	1656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.