Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Forward (+)

69954161 .. 69960031

Gene Structure 5871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG499500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2412 bp

ATGATGCACGGATACGGCATTTTGCCTTCGTATCCCGTATCGATCCGGGATATGGGTACGATACGCCCCGGATACGTGTATCCTGATTTGGATACGATTTGGATACGTCCGTATCCTATGTGGATACGTAATTACGTAAATAAACTGGATACGTGGGGGTACATTTGGGTTTTTACCCTTAAAAAAAAAAAACAAAAACAGAAGACTACAGATCGACCTAACTCACCGCCGCTTCGCTTAATCGATCGTTCACTCGTTCCTCTCTTCTCATCTTCTTCTCAAGTCGCAGCTACCACCTACAGAGTTCTCATCTACTTCGTTTCGCTTGGAGCTTCAATCAAACTCGCTCCGGATATGTCTGGTGGTGAAGGATCTGACTTAGAGGATTATCCATCAATCAGAGACACAGACTCGGAAGATGAAGAGAGTGGTTCCTCTGAAAATGAGGGTGAGCTCAACACCAGCAGAAATGATGGTTTGGCCATTGATCATGGTAATGAGGAGGAAAGTGATAGTTCTGGACTTCATGAAGCAGTCGAGGAAAGTGATTCATCTGAAGATGAGGTTGCTCCCCGAAATACAATTGGTGCTGTTCCCTTGGAGTGGTATCGGGATGAGAAACATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAGAAGGAAAGAGAAGATAAATTACAATCCTTTCTTGCTAGTGCTGATGATTCCAAAAATTGGCGCAAATTTTTGGATGAATACAATGACGAGGAAGTAGAAGTGACAAAAGAAGATATGAAAACTATAAATAGATTGCTTGAAGGAAAGGCGCCACACGGTGACTTTGATCCATATGCGCCTTATGTTGATTGGTTTAAATGGGATGACTCAAAGCATCCACTGTCAAATGCCCCTGAACCCAAGAGACGATTCATTCCTTCAAAATCTGAAAGTAAACTGGTGAAGAGGTTAGTATTAGCAATTCGGAAGGGTTTAATTAAGCCTACAAAGGATGAAGAAGAGGAAGAAGAAAGTGTTTATCCCTTGTGGGGAGACGACTCTAATTCAACGGAAAAGGATGGTAGCCATTTATCTTACATTCCAGCGCCAAAGCCAAAATTGCCAGGGTATGAGGAGTCCTTCAATCCTCCTCCGGAATTCATCCCAACACAAGAAGAGATTGATGCTTATCAGTTAATGTATGAGGAAGACCGCCCTAAGTTTATACCGAAAAGGTTTACATCTATGAGAAGCATCCCTGCATATGAGAATGCTATTAAGGAGTGCTTCGAAAGATGTTTGGATCTATACTTGTGCCCCAGAGTTCGGAAGAAACGTATCAATATTGATCCTGAATCTCTGAAGCCCAAGCTACCAAGCCGAAAGGATCTCAAGCCTTATCCTGTGAAATGTTATCTAGAGTATAGAGGTCACAAAGACACAGTTACATCAGTTTCCACAGAAGCTTCAGGGCAGTGGATTGCATCAGGTTCATCGGATGGAACTGTGCGTATTTGGGAGGTTGAAACTGGTAGATGTCTCAAACTCTGGGAGATTGGAGAAGCTGTCACATATGTAGCTTGGAATCCCAATCCTGAGTATTCCGTATTGGCTGTCTCTGTGGGACAAGATGTACTTATTCTCAACACTGGTTTTGGGAATGAAGAAGTACAGAAAAAAACTAAAGAACTTCTTTCGGCTGAAAGACCTACCACACCAGATGACACGGCTACCTTCGTGAGCTGGATTCAAGATGAAACACATGAGGGCACCAGGTTAAGACATTTTAAGACTGTGTCTTCAGTGGAATGGCATCGTAGAGGAGACTACTTTTCAACGGTGGTGCCAGCAGGCCAATCGAAATCAATTTTTATGCATAGGCTCTCTCAGAAGTCTACCCAGACATTTTCAATCAAGTTGGGTGGGCTTGCAGTTACTTCAGTTTTCCATCCTGTTCGCTCCCACATCTTCATTTCTACAAAGAAAACTATTCGCCAATATGATTTGGTGAAGGGAAAGCAAATCAGAAAGCTTGATACAGGACTAAAAGAAATCTCCTCCATTGCAGTTCATCCTTCTGGTGATCATGTAATTGTGGGGAGCAGAGAAGGAAAATTTTGTTGGTTTGATATGGACCTTTCAACCAAAAAACCTTACCTTATTCGCCAGTGGCATAAGAAGGACATCAACAATGTGTCTATCCATCGTTTATATCCGTTGTTTGCAACATGCTCTGATGATTGCACTGTACAAGTTTCTCATGGCATGGTTTATTCAGATCTTAACCAGAACCCTCTTATAGTTCCACTGGAAATACTCCGAGGTCATGCAAGCTCAGATGGGAGAGGTGTAATGGATTGCAAATTCCACCCAAGGCAGCCCTGGTTGTTCACGGCCGGTGCTGACTCGGTGATCAGACTTTACTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

803

Amino Acids

91.7

Weight (kDa)

5.98

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	203 - 461	4.7e-100	BOP1NT (NUC169) domain
WD40_CDC20-Fz	PF24807	458 - 535	2.9e-06	CDC20/Fizzy WD40 domain
WD40	PF00400	463 - 499	1.1e-09	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	464 - 543	1.4e-12	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	466 - 601	2.4e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	466 - 537	5.1e-08	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	466 - 548	1.3e-10	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	467 - 528	1.3e-06	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	468 - 530	5.3e-06	Prp19 WD40 domain
EIF3I	PF24805	468 - 532	6.3e-09	EIF3I
WD40_Prp19	PF24814	577 - 705	1e-06	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	588 - 801	9e-13	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	611 - 750	8.7e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	650 - 801	2.5e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	651 - 745	3.7e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	655 - 801	1.3e-08	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	808, 1748, 1822
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccI	GTMKAC	1 cut(s)	1874
AccIII	TCCGGA	2 cut(s)	349, 1132
AciI	CCGC	3 cut(s)	227, 230, 1192
AclWI	GGATC	6 cut(s)	37, 379, 821, 1290, 1322, 1374
AcoI	YGGCCR	2 cut(s)	480, 2373
AcsI	RAATTY	4 cut(s)	725, 1136, 2093, 2342
AcuI	CTGAAG	5 cut(s)	576, 1361, 1431, 1764, 1902
AcyI	GRCGYC	1 cut(s)	809
AdeI	CACNNNGTG	1 cut(s)	818
AfaI	GTAC	5 cut(s)	58, 161, 1614, 1650, 2229
AfiI	CCNNNNNNNGG	5 cut(s)	52, 603, 717, 1028, 1305
AflIII	ACRYGT	1 cut(s)	75
AjnI	CCWGG	3 cut(s)	1102, 1751, 2360
AjuI	GAANNNNNNNTTGG	4 cut(s)	893, 925, 2083, 2115
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	6 cut(s)	396, 898, 1026, 1523, 1600, 1797
AlwI	GGATC	6 cut(s)	37, 379, 821, 1290, 1322, 1374
Aor13HI	TCCGGA	2 cut(s)	349, 1132
AoxI	GGCC	3 cut(s)	480, 1831, 2373
ApeKI	GCWGC	2 cut(s)	287, 2356
ApoI	RAATTY	4 cut(s)	725, 1136, 2093, 2342
AspLEI	GCGC	4 cut(s)	723, 811, 838, 1087
AspS9I	GGNCC	1 cut(s)	2113
AsuC2I	CCSGG	2 cut(s)	47, 69
AsuHPI	GGTGA	8 cut(s)	216, 377, 461, 830, 952, 1999, 2072, 2401
AsuII	TTCGAA	1 cut(s)	1269
AvaII	GGWCC	1 cut(s)	2113
BaeGI	GKGCMC	2 cut(s)	1298, 1751
BaeI	ACNNNNGTAYC	4 cut(s)	95, 95, 128, 128
BalI	TGGCCA	1 cut(s)	482
BanI	GGYRCC	3 cut(s)	808, 1748, 1822
BanII	GRGCYC	1 cut(s)	456
BarI	GAAGNNNNNNTAC	2 cut(s)	663, 695
BbsI	GAAGAC	3 cut(s)	209, 1194, 1770
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	299, 2368
BccI	CCATC	7 cut(s)	400, 467, 1052, 1472, 1935, 2190, 2312
BceAI	ACGGC	3 cut(s)	31, 1722, 2388
BcgI	CGANNNNNNTGC	2 cut(s)	1818, 1852
BciT130I	CCWGG	3 cut(s)	1104, 1753, 2362
BciVI	GTATCC	9 cut(s)	5, 42, 65, 85, 90, 96, 117, 123, 142
BclI	TGATCA	3 cut(s)	487, 2062, 2391
BcnI	CCSGG	2 cut(s)	47, 69
BcoDI	GTCTC	6 cut(s)	396, 898, 1026, 1523, 1600, 1797
BfaI	CTAG	2 cut(s)	696, 1397
BfmI	CTRYAG	2 cut(s)	207, 298
BfoI	RGCGCY	2 cut(s)	812, 1088
BfuI	GTATCC	9 cut(s)	5, 42, 65, 85, 90, 96, 117, 123, 142
BglII	AGATCT	1 cut(s)	2257
BisI	GCNGC	3 cut(s)	230, 288, 2357
BlsI	GCNGC	3 cut(s)	231, 289, 2358
Bme1390I	CCNGG	5 cut(s)	47, 69, 1104, 1753, 2362
Bme18I	GGWCC	1 cut(s)	2113
BmgT120I	GGNCC	1 cut(s)	2113
BmiI	GGNNCC	4 cut(s)	433, 810, 1750, 1824
BmrFI	CCNGG	5 cut(s)	47, 69, 1104, 1753, 2362
BmsI	GCATC	5 cut(s)	883, 1153, 1242, 1472, 1801
BpiI	GAAGAC	3 cut(s)	209, 1194, 1770
Bpu14I	TTCGAA	1 cut(s)	1269
BpuEI	CTTGAG	2 cut(s)	264, 1355
BpuMI	CCSGG	2 cut(s)	47, 69
Bsa29I	ATCGAT	2 cut(s)	41, 243
BsaAI	YACGTR	4 cut(s)	76, 128, 136, 153
BsaBI	GATNNNNATC	1 cut(s)	1167
BsaHI	GRCGYC	1 cut(s)	809
BsaJI	CCNNGG	6 cut(s)	67, 597, 1103, 2299, 2351, 2360
BsaWI	WCCGGW	2 cut(s)	349, 1132
BsaXI	ACNNNNNCTCC	2 cut(s)	1530, 1560
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 603, 717, 1028, 1305
Bse118I	RCCGGY	1 cut(s)	2375
Bse1I	ACTGG	6 cut(s)	150, 942, 1513, 1633, 2146, 2292
Bse3DI	GCAATG	1 cut(s)	2040
Bse8I	GATNNNNATC	1 cut(s)	1167
BseAI	TCCGGA	2 cut(s)	349, 1132
BseBI	CCWGG	3 cut(s)	1104, 1753, 2362
BseCI	ATCGAT	2 cut(s)	41, 243
BseDI	CCNNGG	6 cut(s)	67, 597, 1103, 2299, 2351, 2360
BseJI	GATNNNNATC	1 cut(s)	1167
BseLI	CCNNNNNNNGG	5 cut(s)	52, 603, 717, 1028, 1305
BseMI	GCAATG	1 cut(s)	2040
BseMII	CTCAG	3 cut(s)	1566, 1880, 2328
BseNI	ACTGG	6 cut(s)	150, 942, 1513, 1633, 2146, 2292
BseRI	GAGGAG	5 cut(s)	515, 1119, 1127, 1815, 2026
BseSI	GKGCMC	2 cut(s)	1298, 1751
BseX3I	CGGCCG	1 cut(s)	2373
BseXI	GCAGC	2 cut(s)	299, 2368
Bsh1285I	CGRYCG	2 cut(s)	247, 2376
BshFI	GGCC	3 cut(s)	482, 1833, 2375
BshNI	GGYRCC	3 cut(s)	808, 1748, 1822
BshVI	ATCGAT	2 cut(s)	41, 243
BsiEI	CGRYCG	2 cut(s)	247, 2376
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	5 cut(s)	46, 69, 350, 1133, 2376
BslFI	GGGAC	1 cut(s)	1617
BslI	CCNNNNNNNGG	5 cut(s)	52, 603, 717, 1028, 1305
BsmAI	GTCTC	6 cut(s)	396, 898, 1026, 1523, 1600, 1797
BsmBI	CGTCTC	2 cut(s)	898, 1026
BsmFI	GGGAC	1 cut(s)	1617
BsmI	GAATGC	1 cut(s)	1255
BsnI	GGCC	3 cut(s)	482, 1833, 2375
Bsp119I	TTCGAA	1 cut(s)	1269
Bsp1286I	GDGCHC	3 cut(s)	456, 1298, 1751
Bsp13I	TCCGGA	2 cut(s)	349, 1132
Bsp1407I	TGTACA	1 cut(s)	2227
BspACI	CCGC	3 cut(s)	227, 230, 1192
BspANI	GGCC	3 cut(s)	482, 1833, 2375
BspCNI	CTCAG	3 cut(s)	1567, 1879, 2327
BspDI	ATCGAT	2 cut(s)	41, 243
BspEI	TCCGGA	2 cut(s)	349, 1132
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	4 cut(s)	433, 810, 1750, 1824
BspPI	GGATC	6 cut(s)	37, 379, 821, 1290, 1322, 1374
BspT104I	TTCGAA	1 cut(s)	1269
BspT107I	GGYRCC	3 cut(s)	808, 1748, 1822
BsrDI	GCAATG	1 cut(s)	2040
BsrFI	RCCGGY	1 cut(s)	2375
BsrGI	TGTACA	1 cut(s)	2227
BsrI	ACTGG	6 cut(s)	150, 942, 1513, 1633, 2146, 2292
BssAI	RCCGGY	1 cut(s)	2375
BssECI	CCNNGG	6 cut(s)	67, 597, 1103, 2299, 2351, 2360
BssNI	GRCGYC	1 cut(s)	809
BssT1I	CCWWGG	2 cut(s)	597, 2351
Bst2UI	CCWGG	3 cut(s)	1104, 1753, 2362
Bst4CI	ACNGT	7 cut(s)	818, 882, 1423, 1486, 1774, 1819, 2227
Bst6I	CTCTTC	5 cut(s)	269, 417, 938, 993, 1149
BstACI	GRCGYC	1 cut(s)	809
BstAUI	TGTACA	1 cut(s)	2227
BstBAI	YACGTR	4 cut(s)	76, 128, 136, 153
BstBI	TTCGAA	1 cut(s)	1269
BstC8I	GCNNGC	4 cut(s)	1827, 1831, 1908, 2311
BstDEI	CTNAG	5 cut(s)	379, 1197, 1575, 1866, 2314
BstH2I	RGCGCY	2 cut(s)	812, 1088
BstHHI	GCGC	4 cut(s)	723, 811, 838, 1087
BstMAI	GTCTC	6 cut(s)	396, 898, 1026, 1523, 1600, 1797
BstMCI	CGRYCG	2 cut(s)	247, 2376
BstMWI	GCNNNNNNNGC	1 cut(s)	1099
BstNI	CCWGG	3 cut(s)	1104, 1753, 2362
BstNSI	RCATGY	1 cut(s)	2211
BstSCI	CCNGG	5 cut(s)	45, 67, 1102, 1751, 2360
BstSFI	CTRYAG	2 cut(s)	207, 298
BstSLI	GKGCMC	2 cut(s)	1298, 1751
BstSNI	TACGTA	2 cut(s)	128, 136
BstV1I	GCAGC	2 cut(s)	299, 2368
BstV2I	GAAGAC	3 cut(s)	209, 1194, 1770
BstX2I	RGATCY	4 cut(s)	371, 1282, 1366, 2257
BstYI	RGATCY	4 cut(s)	371, 1282, 1366, 2257
BstZI	CGGCCG	1 cut(s)	2373
Bsu15I	ATCGAT	2 cut(s)	41, 243
BsuI	GTATCC	9 cut(s)	5, 42, 65, 85, 90, 96, 117, 123, 142
BsuRI	GGCC	3 cut(s)	482, 1833, 2375
BsuTUI	ATCGAT	2 cut(s)	41, 243
BtsI	GCAGTG	1 cut(s)	1460
BtsIMutI	CAGTG	7 cut(s)	878, 1460, 1626, 1788, 2153, 2223, 2285
Cac8I	GCNNGC	4 cut(s)	1827, 1831, 1908, 2311
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	4 cut(s)	723, 811, 838, 1087
Cfr10I	RCCGGY	1 cut(s)	2375
Cfr13I	GGNCC	1 cut(s)	2113
ClaI	ATCGAT	2 cut(s)	41, 243
CsiI	ACCWGGT	1 cut(s)	1751
Csp6I	GTAC	5 cut(s)	57, 160, 1613, 1649, 2228
CspCI	CAANNNNNGTGG	2 cut(s)	1882, 1917
CviAII	CATG	8 cut(s)	491, 527, 1742, 2066, 2208, 2240, 2245, 2306
CviQI	GTAC	5 cut(s)	57, 160, 1613, 1649, 2228
DdeI	CTNAG	5 cut(s)	379, 1197, 1575, 1866, 2314
DinI	GGCGCC	1 cut(s)	810
DraI	TTTAAA	1 cut(s)	856
DraIII	CACNNNGTG	1 cut(s)	818
EaeI	YGGCCR	2 cut(s)	480, 2373
EagI	CGGCCG	1 cut(s)	2373
Eam1104I	CTCTTC	5 cut(s)	269, 417, 938, 993, 1149
EarI	CTCTTC	5 cut(s)	269, 417, 938, 993, 1149
Ecl136II	GAGCTC	1 cut(s)	454
EclXI	CGGCCG	1 cut(s)	2373
Eco105I	TACGTA	2 cut(s)	128, 136
Eco130I	CCWWGG	2 cut(s)	597, 2351
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	2113
Eco52I	CGGCCG	1 cut(s)	2373
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	5 cut(s)	576, 1361, 1431, 1764, 1902
EcoICRI	GAGCTC	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	1136
EcoRII	CCWGG	3 cut(s)	1102, 1751, 2360
EcoT14I	CCWWGG	2 cut(s)	597, 2351
EcoT22I	ATGCAT	1 cut(s)	1857
EcoT38I	GRGCYC	1 cut(s)	456
EgeI	GGCGCC	1 cut(s)	810
EheI	GGCGCC	1 cut(s)	810
ErhI	CCWWGG	2 cut(s)	597, 2351
Esp3I	CGTCTC	2 cut(s)	898, 1026
FaeI	CATG	8 cut(s)	494, 530, 1745, 2069, 2211, 2243, 2248, 2309
FalI	AAGNNNNNCTT	6 cut(s)	1250, 1282, 1599, 1631, 1656, 1688
FaqI	GGGAC	1 cut(s)	1617
FatI	CATG	8 cut(s)	490, 526, 1741, 2065, 2207, 2239, 2244, 2305
FauNDI	CATATG	3 cut(s)	832, 1243, 1552
FbaI	TGATCA	3 cut(s)	487, 2062, 2391
FblI	GTMKAC	1 cut(s)	1874
Fnu4HI	GCNGC	3 cut(s)	230, 288, 2357
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	3 cut(s)	230, 288, 2357
FspBI	CTAG	2 cut(s)	696, 1397
GlaI	GCGC	4 cut(s)	722, 810, 837, 1086
GluI	GCNGC	3 cut(s)	230, 288, 2357
HaeII	RGCGCY	2 cut(s)	812, 1088
HaeIII	GGCC	3 cut(s)	482, 1833, 2375
HapII	CCGG	5 cut(s)	46, 69, 350, 1133, 2376
HhaI	GCGC	4 cut(s)	723, 811, 838, 1087
Hin1I	GRCGYC	1 cut(s)	809
Hin1II	CATG	8 cut(s)	494, 530, 1745, 2069, 2211, 2243, 2248, 2309
Hin6I	GCGC	4 cut(s)	721, 809, 836, 1085
HinP1I	GCGC	4 cut(s)	721, 809, 836, 1085
HindIII	AAGCTT	2 cut(s)	1443, 2009
HpaII	CCGG	5 cut(s)	46, 69, 350, 1133, 2376
HphI	GGTGA	8 cut(s)	216, 377, 461, 830, 952, 1999, 2072, 2401
Hpy166II	GTNNAC	5 cut(s)	251, 935, 1218, 1875, 2370
Hpy8I	GTNNAC	5 cut(s)	251, 935, 1218, 1875, 2370
HpyCH4III	ACNGT	7 cut(s)	818, 882, 1423, 1486, 1774, 1819, 2227
HpyCH4IV	ACGT	6 cut(s)	75, 106, 127, 135, 152, 1315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1099
HpyF3I	CTNAG	5 cut(s)	379, 1197, 1575, 1866, 2314
HpySE526I	ACGT	6 cut(s)	75, 106, 127, 135, 152, 1315
Hsp92I	GRCGYC	1 cut(s)	809
Hsp92II	CATG	8 cut(s)	494, 530, 1745, 2069, 2211, 2243, 2248, 2309
HspAI	GCGC	4 cut(s)	721, 809, 836, 1085
KasI	GGCGCC	1 cut(s)	808
Kpn2I	TCCGGA	2 cut(s)	349, 1132
Ksp22I	TGATCA	3 cut(s)	487, 2062, 2391
LmnI	GCTCC	5 cut(s)	329, 352, 574, 1943, 2079
Lsp1109I	GCAGC	2 cut(s)	299, 2368
LweI	GCATC	5 cut(s)	883, 1153, 1242, 1472, 1801
MabI	ACCWGGT	1 cut(s)	1751
MaeI	CTAG	2 cut(s)	696, 1397
MaeII	ACGT	6 cut(s)	75, 106, 127, 135, 152, 1315
MaeIII	GTNAC	6 cut(s)	760, 818, 1409, 1423, 1546, 1912
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	4 cut(s)	371, 1282, 1366, 2257
MhlI	GDGCHC	3 cut(s)	456, 1298, 1751
MlsI	TGGCCA	1 cut(s)	482
MluNI	TGGCCA	1 cut(s)	482
Mly113I	GGCGCC	1 cut(s)	809
MlyI	GAGTC	5 cut(s)	404, 860, 1031, 1124, 2378
Mox20I	TGGCCA	1 cut(s)	482
Mph1103I	ATGCAT	1 cut(s)	1857
MroI	TCCGGA	2 cut(s)	349, 1132
MscI	TGGCCA	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	482
MspI	CCGG	5 cut(s)	46, 69, 350, 1133, 2376
MspR9I	CCNGG	5 cut(s)	47, 69, 1104, 1753, 2362
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	1255
MvaI	CCWGG	3 cut(s)	1104, 1753, 2362
MwoI	GCNNNNNNNGC	1 cut(s)	1099
NarI	GGCGCC	1 cut(s)	809
NciI	CCSGG	2 cut(s)	47, 69
NdeI	CATATG	3 cut(s)	832, 1243, 1552
NlaIII	CATG	8 cut(s)	494, 530, 1745, 2069, 2211, 2243, 2248, 2309
NlaIV	GGNNCC	4 cut(s)	433, 810, 1750, 1824
NmuCI	GTSAC	4 cut(s)	760, 818, 1409, 1546
NsiI	ATGCAT	1 cut(s)	1857
NspI	RCATGY	1 cut(s)	2211
NspV	TTCGAA	1 cut(s)	1269
PacI	TTAATTAA	1 cut(s)	978
PagI	TCATGA	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	1312
PctI	GAATGC	1 cut(s)	1255
PfeI	GAWTC	6 cut(s)	548, 707, 909, 1334, 1564, 1726
PflFI	GACNNNGTC	1 cut(s)	1774
PflMI	CCANNNNNTGG	1 cut(s)	717
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	231, 289, 2358
Ple19I	CGATCG	1 cut(s)	247
PleI	GAGTC	5 cut(s)	404, 860, 1031, 1123, 2378
PluTI	GGCGCC	1 cut(s)	812
PpsI	GAGTC	5 cut(s)	404, 860, 1031, 1123, 2378
Ppu21I	YACGTR	4 cut(s)	76, 128, 136, 153
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	3 cut(s)	1102, 1751, 2360
PspGI	CCWGG	3 cut(s)	1102, 1751, 2360
PspN4I	GGNNCC	4 cut(s)	433, 810, 1750, 1824
PspPI	GGNCC	1 cut(s)	2113
PsuI	RGATCY	4 cut(s)	371, 1282, 1366, 2257
PsyI	GACNNNGTC	1 cut(s)	1774
PvuI	CGATCG	1 cut(s)	247
RsaI	GTAC	5 cut(s)	58, 161, 1614, 1650, 2229
RsaNI	GTAC	5 cut(s)	57, 160, 1613, 1649, 2228
RseI	CAYNNNNRTG	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	456
SatI	GCNGC	3 cut(s)	230, 288, 2357
Sau96I	GGNCC	1 cut(s)	2113
SchI	GAGTC	5 cut(s)	404, 860, 1031, 1124, 2378
ScrFI	CCNGG	5 cut(s)	47, 69, 1104, 1753, 2362
SduI	GDGCHC	3 cut(s)	456, 1298, 1751
SexAI	ACCWGGT	1 cut(s)	1751
SfaNI	GCATC	5 cut(s)	883, 1153, 1242, 1472, 1801
SfcI	CTRYAG	2 cut(s)	207, 298
SfoI	GGCGCC	1 cut(s)	810
SfuI	TTCGAA	1 cut(s)	1269
SinI	GGWCC	1 cut(s)	2113
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	279, 1370
SmoI	CTYRAG	2 cut(s)	279, 1370
SnaBI	TACGTA	2 cut(s)	128, 136
SsiI	CCGC	3 cut(s)	227, 230, 1192
SspDI	GGCGCC	1 cut(s)	808
SspI	AATATT	1 cut(s)	1324
SspMI	CTAG	2 cut(s)	696, 1397
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	5 cut(s)	45, 67, 1102, 1751, 2360
StyI	CCWWGG	2 cut(s)	597, 2351
TaaI	ACNGT	7 cut(s)	818, 882, 1423, 1486, 1774, 1819, 2227
TaiI	ACGT	6 cut(s)	78, 109, 130, 138, 155, 1318
TaqI	TCGA	6 cut(s)	41, 214, 243, 537, 1269, 1838
TatI	WGTACW	3 cut(s)	1612, 1648, 2227
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	6 cut(s)	548, 707, 909, 1334, 1564, 1726
TscAI	CASTG	7 cut(s)	885, 1460, 1633, 1788, 2153, 2230, 2292
TseFI	GTSAC	4 cut(s)	760, 818, 1409, 1546
TseI	GCWGC	2 cut(s)	287, 2356
Tsp45I	GTSAC	4 cut(s)	760, 818, 1409, 1546
TspGWI	ACGGA	5 cut(s)	24, 99, 1064, 1573, 2184
TspRI	CASTG	7 cut(s)	885, 1460, 1633, 1788, 2153, 2230, 2292
Tth111I	GACNNNGTC	1 cut(s)	1774
Van91I	CCANNNNNTGG	1 cut(s)	717
VpaK11BI	GGWCC	1 cut(s)	2113
XapI	RAATTY	4 cut(s)	725, 1136, 2093, 2342
XbaI	TCTAGA	1 cut(s)	1396
XceI	RCATGY	1 cut(s)	2211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2358
XmiI	GTMKAC	1 cut(s)	1874
XspI	CTAG	2 cut(s)	696, 1397
Zsp2I	ATGCAT	1 cut(s)	1857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.