Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40360 AT2G40360 |
| fragaria_vesca | FvH4_5g21650 FvH4_5g21650 FvH4_5g21650 |
| malus_domestica | MD05G1062400.v1.1 MD10G1070100.v1.1 |
| prunus_persica | Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 |
| pyrus_communis | pycom05g05370 pycom05g05390 pycom10g05570 |
| rosa_chinensis | RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541 |
| rosa_laevigata | RLG00000000568 |
| rosa_multiflora | Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023 |
| rosa_roxburghii | Rroxscaffold_3G00218950 Rroxscaffold_3G00249700 |
| rosa_rugosa | Rorug07G0109700 Rorug07G0109800 Rorug07G0345000 |
| rosa_samantha | Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200 |
| rosa_wichuraiana | Rw7G020660 Rw7G042200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 62 |
| AcsI | RAATTY | 2 cut(s) | 308, 377 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 61 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 305 |
| ApeKI | GCWGC | 1 cut(s) | 296 |
| ApoI | RAATTY | 2 cut(s) | 308, 377 |
| BbvI | GCAGC | 1 cut(s) | 283 |
| BccI | CCATC | 2 cut(s) | 133, 175 |
| BfaI | CTAG | 3 cut(s) | 14, 125, 264 |
| BfmI | CTRYAG | 1 cut(s) | 297 |
| BisI | GCNGC | 1 cut(s) | 297 |
| BlsI | GCNGC | 1 cut(s) | 298 |
| BmiI | GGNNCC | 1 cut(s) | 201 |
| BsaJI | CCNNGG | 2 cut(s) | 56, 313 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 61 |
| BseDI | CCNNGG | 2 cut(s) | 56, 313 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BseXI | GCAGC | 1 cut(s) | 283 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 61 |
| Bsp143I | GATC | 2 cut(s) | 240, 343 |
| BspACI | CCGC | 1 cut(s) | 62 |
| BspLI | GGNNCC | 1 cut(s) | 201 |
| BspMAI | CTGCAG | 1 cut(s) | 301 |
| BssECI | CCNNGG | 2 cut(s) | 56, 313 |
| BssMI | GATC | 2 cut(s) | 240, 343 |
| BssT1I | CCWWGG | 2 cut(s) | 56, 313 |
| BstDEI | CTNAG | 1 cut(s) | 284 |
| BstKTI | GATC | 2 cut(s) | 243, 346 |
| BstMBI | GATC | 2 cut(s) | 240, 343 |
| BstSFI | CTRYAG | 1 cut(s) | 297 |
| BstV1I | GCAGC | 1 cut(s) | 283 |
| BtsI | GCAGTG | 2 cut(s) | 150, 306 |
| BtsIMutI | CAGTG | 2 cut(s) | 150, 306 |
| CaiI | CAGNNNCTG | 1 cut(s) | 305 |
| CviJI | RGCY | 4 cut(s) | 156, 230, 296, 351 |
| CviKI_1 | RGCY | 4 cut(s) | 156, 230, 296, 351 |
| DdeI | CTNAG | 1 cut(s) | 284 |
| DpnI | GATC | 2 cut(s) | 242, 345 |
| DpnII | GATC | 2 cut(s) | 240, 343 |
| Eco130I | CCWWGG | 2 cut(s) | 56, 313 |
| EcoRI | GAATTC | 1 cut(s) | 308 |
| EcoT14I | CCWWGG | 2 cut(s) | 56, 313 |
| ErhI | CCWWGG | 2 cut(s) | 56, 313 |
| FaiI | YATR | 6 cut(s) | 11, 190, 245, 247, 249, 323 |
| Fnu4HI | GCNGC | 1 cut(s) | 297 |
| Fsp4HI | GCNGC | 1 cut(s) | 297 |
| FspBI | CTAG | 3 cut(s) | 14, 125, 264 |
| GluI | GCNGC | 1 cut(s) | 297 |
| HinfI | GANTC | 3 cut(s) | 26, 82, 363 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy188I | TCNGA | 2 cut(s) | 225, 275 |
| Hpy188III | TCNNGA | 2 cut(s) | 125, 214 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| HpyCH4V | TGCA | 2 cut(s) | 109, 299 |
| HpyF3I | CTNAG | 1 cut(s) | 284 |
| Kzo9I | GATC | 2 cut(s) | 240, 343 |
| LpnPI | CCDG | 5 cut(s) | 95, 150, 170, 199, 244 |
| Lsp1109I | GCAGC | 1 cut(s) | 283 |
| MaeI | CTAG | 3 cut(s) | 14, 125, 264 |
| MaeIII | GTNAC | 2 cut(s) | 92, 301 |
| MalI | GATC | 2 cut(s) | 242, 345 |
| MboI | GATC | 2 cut(s) | 240, 343 |
| MluCI | AATT | 4 cut(s) | 219, 288, 308, 377 |
| MnlI | CCTC | 2 cut(s) | 178, 286 |
| MseI | TTAA | 1 cut(s) | 382 |
| NdeII | GATC | 2 cut(s) | 240, 343 |
| NlaIV | GGNNCC | 1 cut(s) | 201 |
| NmuCI | GTSAC | 1 cut(s) | 301 |
| PfeI | GAWTC | 3 cut(s) | 26, 82, 363 |
| PkrI | GCNGC | 1 cut(s) | 298 |
| PspN4I | GGNNCC | 1 cut(s) | 201 |
| PstI | CTGCAG | 1 cut(s) | 301 |
| PstNI | CAGNNNCTG | 1 cut(s) | 305 |
| SaqAI | TTAA | 1 cut(s) | 382 |
| SatI | GCNGC | 1 cut(s) | 297 |
| Sau3AI | GATC | 2 cut(s) | 240, 343 |
| SetI | ASST | 1 cut(s) | 189 |
| SfcI | CTRYAG | 1 cut(s) | 297 |
| Sse9I | AATT | 4 cut(s) | 219, 288, 308, 377 |
| SsiI | CCGC | 1 cut(s) | 62 |
| SspMI | CTAG | 3 cut(s) | 14, 125, 264 |
| StyI | CCWWGG | 2 cut(s) | 56, 313 |
| TasI | AATT | 4 cut(s) | 219, 288, 308, 377 |
| TfiI | GAWTC | 3 cut(s) | 26, 82, 363 |
| Tru1I | TTAA | 1 cut(s) | 382 |
| Tru9I | TTAA | 1 cut(s) | 382 |
| TscAI | CASTG | 2 cut(s) | 150, 306 |
| TseFI | GTSAC | 1 cut(s) | 301 |
| TseI | GCWGC | 1 cut(s) | 296 |
| Tsp45I | GTSAC | 1 cut(s) | 301 |
| TspDTI | ATGAA | 1 cut(s) | 264 |
| TspRI | CASTG | 2 cut(s) | 150, 306 |
| XapI | RAATTY | 2 cut(s) | 308, 377 |
| XbaI | TCTAGA | 1 cut(s) | 124 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 210 |
| XspI | CTAG | 3 cut(s) | 14, 125, 264 |