Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Forward (+)

67605833 .. 67607385

Gene Structure 1553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCATAGGCTCTCTCAGAAGTCTACCCAGACATTTTCAATCAAGTTGGGTGGGCTTGCAGTTACTTCAGTTTTCCATCCTGTTCGCTCCCACATCTTCATTTCTACAAAGAAAACTATTCGCCAATATGATTTGGTGAAGGGAAAGCAAATCAGAAAGCTTGATACAGGACTAAAAGAAATCTCCTCCATTGCAGCTCATCCTTCTGGTGATCATGTAATTGTGGGGAGCAGAGAAGGAAAATTTTGTTGGTTTGATATGGACCTTTCAACCAAAAAACCTTACCTTATTCGCCAGTGGCATAAGAAGGACATCAACAATGTGTCTATCCATCGTTTATATCCGTTGTTTGCAACATGCTCTGATGATTGCGCTGTACAAGTTTCTCATGGCATGGTTTATTCAGATCTTAACCAGAACCCTCTTATAGTTCCACTGGAAATACTCCGAGGTCATGCAAGCTCAGATGGGAGAGGTGTAATGGATTGCAAATTCCACCCAAGGCAGCCCTGGTTGTTCACGGCCGGTGCTGACTCGGTGATCAGACTTTACTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

186

Amino Acids

21.05

Weight (kDa)

9.46

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	6 - 134	6.7e-08	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	25 - 184	8.1e-12	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	32 - 184	1.4e-09	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	34 - 128	6.6e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	38 - 129	4.1e-08	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	59 - 184	7.2e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	242, 491
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	378
AgsI	TTSAA	2 cut(s)	39, 270
AjnI	CCWGG	1 cut(s)	509
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	3 cut(s)	160, 197, 462
AluI	AGCT	3 cut(s)	160, 197, 462
AoxI	GGCC	1 cut(s)	522
ApeKI	GCWGC	2 cut(s)	194, 505
ApoI	RAATTY	2 cut(s)	242, 491
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	3 cut(s)	148, 221, 550
AvaII	GGWCC	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	206, 517
BccI	CCATC	3 cut(s)	84, 339, 461
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	511
BclI	TGATCA	2 cut(s)	211, 540
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	2 cut(s)	195, 506
BlsI	GCNGC	2 cut(s)	196, 507
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	511
BsaJI	CCNNGG	3 cut(s)	448, 500, 509
Bse118I	RCCGGY	1 cut(s)	524
Bse1I	ACTGG	2 cut(s)	295, 441
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	3 cut(s)	448, 500, 509
BseGI	GGATG	2 cut(s)	76, 199
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	29, 477
BseNI	ACTGG	2 cut(s)	295, 441
BseRI	GAGGAG	1 cut(s)	175
BseX3I	CGGCCG	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	206, 517
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	525
BsiSI	CCGG	1 cut(s)	525
BsnI	GGCC	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	211, 406, 540
BspANI	GGCC	1 cut(s)	524
BspCNI	CTCAG	2 cut(s)	28, 476
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	524
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	295, 441
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	3 cut(s)	448, 500, 509
BssMI	GATC	3 cut(s)	211, 406, 540
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	511
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	57, 460
BstDEI	CTNAG	2 cut(s)	15, 463
BstF5I	GGATG	2 cut(s)	76, 199
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	3 cut(s)	214, 409, 543
BstMBI	GATC	3 cut(s)	211, 406, 540
BstMCI	CGRYCG	1 cut(s)	525
BstNI	CCWGG	1 cut(s)	511
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	509
BstV1I	GCAGC	2 cut(s)	206, 517
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BstZI	CGGCCG	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	524
BtsCI	GGATG	2 cut(s)	76, 199
BtsIMutI	CAGTG	2 cut(s)	302, 434
Cac8I	GCNNGC	2 cut(s)	57, 460
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	5 cut(s)	215, 357, 389, 394, 455
CviJI	RGCY	7 cut(s)	10, 55, 160, 197, 462, 508, 524
CviKI_1	RGCY	7 cut(s)	10, 55, 160, 197, 462, 508, 524
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	2 cut(s)	15, 463
DpnI	GATC	3 cut(s)	213, 408, 542
DpnII	GATC	3 cut(s)	211, 406, 540
EaeI	YGGCCR	1 cut(s)	522
EagI	CGGCCG	1 cut(s)	522
EclXI	CGGCCG	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	262
Eco52I	CGGCCG	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	500
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	5 cut(s)	218, 360, 392, 397, 458
FatI	CATG	5 cut(s)	214, 356, 388, 393, 454
FbaI	TGATCA	2 cut(s)	211, 540
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	195, 506
FokI	GGATG	2 cut(s)	63, 186
Fsp4HI	GCNGC	2 cut(s)	195, 506
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	2 cut(s)	195, 506
HaeIII	GGCC	1 cut(s)	524
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	5 cut(s)	218, 360, 392, 397, 458
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	533
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	3 cut(s)	148, 221, 550
Hpy166II	GTNNAC	2 cut(s)	24, 519
Hpy188I	TCNGA	7 cut(s)	18, 155, 364, 406, 449, 466, 545
Hpy8I	GTNNAC	2 cut(s)	24, 519
HpyAV	CCTTC	4 cut(s)	133, 213, 230, 301
HpyCH4V	TGCA	6 cut(s)	4, 59, 194, 353, 458, 489
HpyF3I	CTNAG	2 cut(s)	15, 463
Hsp92II	CATG	5 cut(s)	218, 360, 392, 397, 458
HspAI	GCGC	1 cut(s)	372
Ksp22I	TGATCA	2 cut(s)	211, 540
Kzo9I	GATC	3 cut(s)	211, 406, 540
LmnI	GCTCC	2 cut(s)	92, 228
Lsp1109I	GCAGC	2 cut(s)	206, 517
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	213, 408, 542
MboI	GATC	3 cut(s)	211, 406, 540
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	3 cut(s)	219, 242, 491
MlyI	GAGTC	1 cut(s)	527
MnlI	CCTC	4 cut(s)	196, 432, 443, 467
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	411
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	511
NdeII	GATC	3 cut(s)	211, 406, 540
NlaIII	CATG	5 cut(s)	218, 360, 392, 397, 458
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	196, 507
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspPI	GGNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	195, 506
Sau3AI	GATC	3 cut(s)	211, 406, 540
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	1 cut(s)	511
SetI	ASST	8 cut(s)	162, 199, 267, 283, 288, 454, 464, 478
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	3 cut(s)	219, 242, 491
StyD4I	CCNGG	1 cut(s)	509
StyI	CCWWGG	1 cut(s)	500
TasI	AATT	3 cut(s)	219, 242, 491
TatI	WGTACW	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	302, 441
TseI	GCWGC	2 cut(s)	194, 505
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	302, 441
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	2 cut(s)	242, 491
XceI	RCATGY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XmiI	GTMKAC	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.