Prupe.6G148400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001949
Physical Location & Seq
Forward (+)
12489558 .. 12490432
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G148400.1

Sequence Viewer

Length: 273 bp
ATGAAGCAATTGGCCGAGGGCATCCAGGCATACAACCAAGCCATGATGGAGTACAATGTTGGCCAAGCCTTGACTGAAAAGATTCAATCAACTAACCATATTTTGCAAGCCCACCTTCATATCTGCCACGAGGGAAAACAAGAACTGGACAAACTTAAGGAGGAGCAGAAAAAGATTGAGGCCAGAAAATCAACCATCCTTGCCAAGATTGACAATGCGGTCCAAGACTCTCAGCCACATCAGGTCGAACTAGAAAAGTTTATGCAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.4

Weight (kDa)

6.18

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AciI CCGC 1 cut(s) 218
AcoI YGGCCR 2 cut(s) 12, 61
AfaI GTAC 1 cut(s) 53
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 24
AoxI GGCC 3 cut(s) 12, 61, 180
ApeKI GCWGC 1 cut(s) 265
Asp700I GAANNNNTTC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 63
BauI CACGAG 1 cut(s) 128
BccI CCATC 2 cut(s) 40, 203
BciT130I CCWGG 1 cut(s) 26
BfaI CTAG 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 2 cut(s) 21, 195
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 176
BshFI GGCC 3 cut(s) 14, 63, 182
BsnI GGCC 3 cut(s) 14, 63, 182
BspACI CCGC 1 cut(s) 218
BspANI GGCC 3 cut(s) 14, 63, 182
BspCNI CTCAG 1 cut(s) 244
BspTI CTTAAG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 15
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 26
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 21, 195
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BsuRI GGCC 3 cut(s) 14, 63, 182
BtsCI GGATG 2 cut(s) 21, 195
Cac8I GCNNGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 52
CviAII CATG 1 cut(s) 43
CviJI RGCY 7 cut(s) 14, 41, 63, 68, 110, 182, 235
CviKI_1 RGCY 7 cut(s) 14, 41, 63, 68, 110, 182, 235
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 231
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 2 cut(s) 12, 61
Eco47I GGWCC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 46
FaiI YATR 5 cut(s) 31, 44, 99, 120, 263
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 2 cut(s) 8, 182
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 1 cut(s) 251
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 3 cut(s) 14, 63, 182
Hin1II CATG 1 cut(s) 46
HinfI GANTC 2 cut(s) 82, 227
HpyAV CCTTC 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 106, 265
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 46
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 11, 38, 131, 196, 227
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 251
MfeI CAATTG 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 63
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 4 cut(s) 10, 124, 154, 172
Mox20I TGGCCA 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 81
MscI TGGCCA 1 cut(s) 63
MseI TTAA 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 26
NlaIII CATG 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspPI GGNCC 1 cut(s) 220
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 26
SetI ASST 2 cut(s) 117, 246
SfaNI GCATC 1 cut(s) 30
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 24
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 8
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 17, 107
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 220
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.