Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001949

Physical Location & Seq

Genomic Coordinates Forward (+)

65294570 .. 65297230

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCGGGTCTTCTTGATGATCGATTAGAACTTGGGCAAATACTTTTACAAGCGCAACATCGATGGCTACGCCCTGCTGAAGTCTGTGAACTCATTCGAAGTCATACAAGATTGAGGCTTTGTGATGAGCCCGCAAATATGCTACTCAGTGGATCAATTTTTCTTTTCAACCAGAAGGTGCTGAGAAAATGTACGACAGATGGTCATAACTGGAGCAAGAATAAAGATGGAAAGACAGTGATGGAGGCAATGAGAAGCTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 CG-1 IQ TIG

Protein Analysis

88

Amino Acids

10.08

Weight (kDa)

9.02

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CG-1	PF03859	17 - 84	8.5e-16	CG-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22300 AT2G22300 AT2G22300
fragaria_vesca	FvH4_1g20721 FvH4_1g20721 FvH4_1g20730 FvH4_1g20730
malus_domestica	MD01G1031100.v1.1 MD15G1318400.v1.1
prunus_persica	Prupe.6G148400_v2.0.a1 Prupe.6G187700_v2.0.a1 Prupe.6G187700_v2.0.a1
pyrus_communis	pycom01g05850 pycom12g03400 pycom15g28500
rosa_chinensis	RchiOBHm_Chr2g0113241 RchiOBHm_Chr2g0113251 RchiOBHm_Chr2g0113261 RchiOBHm_Chr2g0113351
rosa_laevigata	RLG00000018051
rosa_multiflora	Rmu_sc0001287.1_g000018 Rmu_sc0001702.1_g000026 Rmu_sc0002718.1_g000004 Rmu_sc0003692.1_g000032 Rmu_sc0005004.1_g000003 Rmu_sc0005949.1_g000007 Rmu_sc0007415.1_g000004 Rmu_sc0008490.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129330 Rroxscaffold_2G00129410 Rroxscaffold_2G00129480 Rroxscaffold_2G00129820 Rroxscaffold_2G00129840
rosa_rugosa	Rorug02G0186100 Rorug02G0186200 Rorug02G0186400
rosa_samantha	Rh2AG240600 Rh2AG241000 Rh2BG254600 Rh2BG255100 Rh2CG244700 Rh2CG245300 Rh2DG248600 Rh2DG249000
rosa_wichuraiana	Rw2G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 132
AclWI	GGATC	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	169
AhdI	GACNNNNNGTC	1 cut(s)	201
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
AlwI	GGATC	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	2
BccI	CCATC	4 cut(s)	57, 194, 221, 235
BmeRI	GACNNNNNGTC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	2
BpmI	CTGGAG	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	244
Bsa29I	ATCGAT	2 cut(s)	22, 61
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	255
BseCI	ATCGAT	2 cut(s)	22, 61
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	160, 173
BseNI	ACTGG	1 cut(s)	215
BshVI	ATCGAT	2 cut(s)	22, 61
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	19, 152
BspACI	CCGC	2 cut(s)	5, 132
BspCNI	CTCAG	2 cut(s)	159, 174
BspDI	ATCGAT	2 cut(s)	22, 61
BspPI	GGATC	1 cut(s)	160
BspT104I	TTCGAA	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	19, 152
Bst4CI	ACNGT	1 cut(s)	238
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	146, 182
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	2 cut(s)	22, 155
BstMBI	GATC	2 cut(s)	19, 152
BstV2I	GAAGAC	1 cut(s)	2
Bsu15I	ATCGAT	2 cut(s)	22, 61
BsuTUI	ATCGAT	2 cut(s)	22, 61
BtsIMutI	CAGTG	2 cut(s)	154, 243
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	55
ClaI	ATCGAT	2 cut(s)	22, 61
Csp6I	GTAC	1 cut(s)	192
CviJI	RGCY	4 cut(s)	67, 118, 130, 258
CviKI_1	RGCY	4 cut(s)	67, 118, 130, 258
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	146, 182
DpnI	GATC	2 cut(s)	21, 154
DpnII	GATC	2 cut(s)	19, 152
DriI	GACNNNNNGTC	1 cut(s)	201
Eam1105I	GACNNNNNGTC	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	132
FaiI	YATR	3 cut(s)	105, 140, 207
FauI	CCCGC	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	132
GlaI	GCGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	232
HhaI	GCGC	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	238
HpyF3I	CTNAG	2 cut(s)	146, 182
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	19, 152
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	3 cut(s)	87, 185, 196
MalI	GATC	2 cut(s)	21, 154
MboI	GATC	2 cut(s)	19, 152
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	156
MnlI	CCTC	2 cut(s)	108, 238
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	265
NdeII	GATC	2 cut(s)	19, 152
NspV	TTCGAA	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	93
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	265
Sau3AI	GATC	2 cut(s)	19, 152
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	2 cut(s)	180, 260
SfuI	TTCGAA	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	2 cut(s)	5, 132
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	22, 61, 97
TasI	AATT	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TscAI	CASTG	2 cut(s)	154, 243
TspRI	CASTG	2 cut(s)	154, 243
XmnI	GAANNNNTTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.