Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005004.1

Orthogroup ID

OG0001949

Physical Location & Seq

Genomic Coordinates Forward (+)

26127 .. 28135

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005004.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggaagacttgagattcgaacctccaacctctcgcacgacaacccaactccccaccactagagaacaaactgttctcggtgaagaggtcggaggaggtgagggagtcgcggcggccaggggaggcagggggagaagagaatgggagggcggcatcggtggactgacgtggcagggggatcatgacgggaaagagagagttgccggagggagaaatgtcggagaccggagaggaggaggcgatgggctccggggcggcgaagaacccgacttggcggaccttcgggtcgctgacgaagaagttgaaagaaagcaggggaagaagaagctgaaaaagaaaaacaagaaagacaaaaagaaagaaagaaagcaaaaaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.83

Weight (kDa)

9.77

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22300 AT2G22300 AT2G22300
fragaria_vesca	FvH4_1g20721 FvH4_1g20721 FvH4_1g20730 FvH4_1g20730
malus_domestica	MD01G1031100.v1.1 MD15G1318400.v1.1
prunus_persica	Prupe.6G148400_v2.0.a1 Prupe.6G187700_v2.0.a1 Prupe.6G187700_v2.0.a1
pyrus_communis	pycom01g05850 pycom12g03400 pycom15g28500
rosa_chinensis	RchiOBHm_Chr2g0113241 RchiOBHm_Chr2g0113251 RchiOBHm_Chr2g0113261 RchiOBHm_Chr2g0113351
rosa_laevigata	RLG00000018051
rosa_multiflora	Rmu_sc0001287.1_g000018 Rmu_sc0001702.1_g000026 Rmu_sc0002718.1_g000004 Rmu_sc0003692.1_g000032 Rmu_sc0005004.1_g000003 Rmu_sc0005949.1_g000007 Rmu_sc0007415.1_g000004 Rmu_sc0008490.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129330 Rroxscaffold_2G00129410 Rroxscaffold_2G00129480 Rroxscaffold_2G00129820 Rroxscaffold_2G00129840
rosa_rugosa	Rorug02G0186100 Rorug02G0186200 Rorug02G0186400
rosa_samantha	Rh2AG240600 Rh2AG241000 Rh2BG254600 Rh2BG255100 Rh2CG244700 Rh2CG245300 Rh2DG248600 Rh2DG249000
rosa_wichuraiana	Rw2G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccII	CGCG	1 cut(s)	110
AciI	CCGC	5 cut(s)	110, 113, 150, 255, 275
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	305
AjiI	CACGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	114
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	92, 110
AsuII	TTCGAA	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	4 cut(s)	111, 114, 151, 256
BlsI	GCNGC	4 cut(s)	112, 115, 152, 257
Bme1390I	CCNGG	2 cut(s)	118, 251
Bme18I	GGWCC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	2 cut(s)	118, 251
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	117, 250
BsaWI	WCCGGW	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	117, 250
BseRI	GAGGAG	3 cut(s)	108, 246, 249
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	204, 226, 250
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	5 cut(s)	110, 113, 150, 255, 275
BspANI	GGCC	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	117, 250
BssMI	GATC	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	78, 130
BstBI	TTCGAA	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	110
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	116, 249
BstUI	CGCG	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	3 cut(s)	116, 247, 328
CviKI_1	RGCY	3 cut(s)	116, 247, 328
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	78, 130
EarI	CTCTTC	2 cut(s)	78, 130
EciI	GGCGGA	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	185
FaiI	YATR	1 cut(s)	183
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	111, 114, 151, 256
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	111, 114, 151, 256
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	4 cut(s)	111, 114, 151, 256
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	3 cut(s)	204, 226, 250
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	2 cut(s)	15, 105
HpaII	CCGG	3 cut(s)	204, 226, 250
HphI	GGTGA	2 cut(s)	92, 110
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	92, 221
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	8 cut(s)	103, 112, 130, 158, 217, 239, 263, 299
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	167
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	7 cut(s)	17, 95, 147, 272, 308, 331, 334
MhlI	GDGCHC	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	3 cut(s)	50, 70, 199
MspI	CCGG	3 cut(s)	204, 226, 250
MspR9I	CCNGG	2 cut(s)	118, 251
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	110
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	18
PagI	TCATGA	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	4 cut(s)	112, 115, 152, 257
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	277
SatI	GCNGC	4 cut(s)	111, 114, 151, 256
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	118, 251
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	25, 32, 90, 100, 170, 282, 330
SfaNI	GCATC	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	18
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SsiI	CCGC	5 cut(s)	110, 113, 150, 255, 275
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	116, 249
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	18
TauI	GCSGC	4 cut(s)	113, 116, 153, 258
TfiI	GAWTC	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	277
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.