Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001287.1

Orthogroup ID

OG0001949

Physical Location & Seq

Genomic Coordinates Forward (+)

103925 .. 107725

Gene Structure 3801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001287.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggcggctaggaagcgacagcgtcttgatgatcaattagaacttccgcaaatactttcacaagcaaagcatcgatggctacgtcctgctgaaattttcgaagttcttcataatcattcaagactttgtctttcggagcctgcagataagccatcgagtggatcattgtatctttatgatcggaacgtgctcaggtctttcagaaaagatggctatagatggaagaagactaaagatggaaaggcagtgaaggaagcccatgagaggctcaaggctaaaggagttgaggcattacattgctactatgcccatggagcagaaaatgagaatttccaaagacgctgttattggatgattgatgattctgcagtttttgcaattctgcttcatcttttgttcttttttcttcctccccaatccccatcaacgtcgtcgtcacggccgcagcgggcaaaccgagttggaccggagctggcggccgggggagaaagtgaactcgacgtcgaaggagtgaggtggcggggggatcatgacgagagagagagagttgctggagggggaaatgtcggagacaggaggggaggaggcgatgggctccggggcggcgaagaacctgacttggcggaccttcggattgctgacgaagaagctgaaagaaagcagagggaagaagctgaaaaagaaaaaaaaagaaagcaagaaagcaaaaaaaaaaaaaaaaaaaacttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 CG-1 IQ TIG

Protein Analysis

243

Amino Acids

27.92

Weight (kDa)

9.33

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22300 AT2G22300 AT2G22300
fragaria_vesca	FvH4_1g20721 FvH4_1g20721 FvH4_1g20730 FvH4_1g20730
malus_domestica	MD01G1031100.v1.1 MD15G1318400.v1.1
prunus_persica	Prupe.6G148400_v2.0.a1 Prupe.6G187700_v2.0.a1 Prupe.6G187700_v2.0.a1
pyrus_communis	pycom01g05850 pycom12g03400 pycom15g28500
rosa_chinensis	RchiOBHm_Chr2g0113241 RchiOBHm_Chr2g0113251 RchiOBHm_Chr2g0113261 RchiOBHm_Chr2g0113351
rosa_laevigata	RLG00000018051
rosa_multiflora	Rmu_sc0001287.1_g000018 Rmu_sc0001702.1_g000026 Rmu_sc0002718.1_g000004 Rmu_sc0003692.1_g000032 Rmu_sc0005004.1_g000003 Rmu_sc0005949.1_g000007 Rmu_sc0007415.1_g000004 Rmu_sc0008490.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129330 Rroxscaffold_2G00129410 Rroxscaffold_2G00129480 Rroxscaffold_2G00129820 Rroxscaffold_2G00129840
rosa_rugosa	Rorug02G0186100 Rorug02G0186200 Rorug02G0186400
rosa_samantha	Rh2AG240600 Rh2AG241000 Rh2BG254600 Rh2BG255100 Rh2CG244700 Rh2CG245300 Rh2DG248600 Rh2DG249000
rosa_wichuraiana	Rw2G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccB7I	CCANNNNNTGG	1 cut(s)	158
AciI	CCGC	8 cut(s)	5, 47, 443, 448, 476, 520, 603, 623
AclWI	GGATC	2 cut(s)	169, 534
AcoI	YGGCCR	2 cut(s)	440, 477
AcsI	RAATTY	2 cut(s)	93, 328
AcyI	GRCGYC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	158, 264
AgsI	TTSAA	1 cut(s)	120
AluBI	AGCT	3 cut(s)	472, 650, 674
AluI	AGCT	3 cut(s)	472, 650, 674
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	564
AlwI	GGATC	2 cut(s)	169, 534
AoxI	GGCC	2 cut(s)	440, 477
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	2 cut(s)	93, 328
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	2 cut(s)	464, 625
AsuC2I	CCSGG	2 cut(s)	481, 599
AsuII	TTCGAA	1 cut(s)	99
AvaII	GGWCC	2 cut(s)	464, 625
BanII	GRGCYC	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	7 cut(s)	69, 160, 203, 213, 230, 430, 584
BceAI	ACGGC	1 cut(s)	455
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	2 cut(s)	481, 599
BcoDI	GTCTC	1 cut(s)	564
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	3 cut(s)	141, 214, 366
BisI	GCNGC	5 cut(s)	6, 443, 446, 477, 604
BlsI	GCNGC	5 cut(s)	7, 444, 447, 478, 605
Bme1390I	CCNGG	2 cut(s)	481, 599
Bme18I	GGWCC	2 cut(s)	464, 625
BmgT120I	GGNCC	2 cut(s)	464, 625
BmiI	GGNNCC	2 cut(s)	138, 596
BmrFI	CCNGG	2 cut(s)	481, 599
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	481, 599
Bsa29I	ATCGAT	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	310, 480, 598
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 264
Bse3DI	GCAATG	1 cut(s)	295
BseCI	ATCGAT	1 cut(s)	73
BseDI	CCNNGG	3 cut(s)	310, 480, 598
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	158, 264
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	597
BseX3I	CGGCCG	2 cut(s)	440, 477
BseXI	GCAGC	1 cut(s)	457
Bsh1285I	CGRYCG	2 cut(s)	443, 480
BshFI	GGCC	2 cut(s)	442, 479
BshVI	ATCGAT	1 cut(s)	73
BsiEI	CGRYCG	2 cut(s)	443, 480
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	467, 480, 598
BslI	CCNNNNNNNGG	2 cut(s)	158, 264
BsmAI	GTCTC	1 cut(s)	564
BsnI	GGCC	2 cut(s)	442, 479
Bsp119I	TTCGAA	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	192, 597
Bsp143I	GATC	4 cut(s)	31, 161, 178, 526
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	8 cut(s)	5, 47, 443, 448, 476, 520, 603, 623
BspANI	GGCC	2 cut(s)	442, 479
BspCNI	CTCAG	1 cut(s)	204
BspDI	ATCGAT	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	138, 596
BspMAI	CTGCAG	2 cut(s)	145, 370
BspPI	GGATC	2 cut(s)	169, 534
BspT104I	TTCGAA	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	310, 480, 598
BssMI	GATC	4 cut(s)	31, 161, 178, 526
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBI	TTCGAA	1 cut(s)	99
BstC8I	GCNNGC	3 cut(s)	141, 450, 474
BstDEI	CTNAG	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	357
BstKTI	GATC	4 cut(s)	34, 164, 181, 529
BstMAI	GTCTC	1 cut(s)	564
BstMBI	GATC	4 cut(s)	31, 161, 178, 526
BstMCI	CGRYCG	2 cut(s)	443, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 314, 374
BstSCI	CCNGG	2 cut(s)	479, 597
BstSFI	CTRYAG	3 cut(s)	141, 214, 366
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	233
BstZI	CGGCCG	2 cut(s)	440, 477
Bsu15I	ATCGAT	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	442, 479
BsuTUI	ATCGAT	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	141, 450, 474
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	464, 625
ClaI	ATCGAT	1 cut(s)	73
CseI	GACGC	2 cut(s)	11, 348
CviAII	CATG	3 cut(s)	260, 311, 530
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	4 cut(s)	33, 163, 180, 528
DpnII	GATC	4 cut(s)	31, 161, 178, 526
EaeI	YGGCCR	2 cut(s)	440, 477
EagI	CGGCCG	2 cut(s)	440, 477
EciI	GGCGGA	1 cut(s)	638
EclXI	CGGCCG	2 cut(s)	440, 477
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	597
Eco47I	GGWCC	2 cut(s)	464, 625
Eco52I	CGGCCG	2 cut(s)	440, 477
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	3 cut(s)	263, 314, 533
FaiI	YATR	7 cut(s)	111, 177, 216, 261, 306, 312, 531
FatI	CATG	3 cut(s)	259, 310, 529
FauI	CCCGC	2 cut(s)	441, 513
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	5 cut(s)	6, 443, 446, 477, 604
FokI	GGATG	1 cut(s)	364
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	5 cut(s)	6, 443, 446, 477, 604
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	5 cut(s)	6, 443, 446, 477, 604
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	442, 479
HapII	CCGG	3 cut(s)	467, 480, 598
HgaI	GACGC	2 cut(s)	11, 348
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	3 cut(s)	263, 314, 533
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	3 cut(s)	467, 480, 598
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	5 cut(s)	136, 183, 203, 569, 633
Hpy188III	TCNNGA	3 cut(s)	26, 120, 530
Hpy8I	GTNNAC	1 cut(s)	494
Hpy99I	CGWCG	4 cut(s)	433, 436, 503, 506
HpyAV	CCTTC	3 cut(s)	244, 500, 638
HpyCH4IV	ACGT	4 cut(s)	82, 186, 428, 501
HpyCH4V	TGCA	3 cut(s)	143, 368, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 314, 374
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	4 cut(s)	82, 186, 428, 501
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	263, 314, 533
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	31, 161, 178, 526
LmnI	GCTCC	4 cut(s)	136, 314, 469, 600
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	4 cut(s)	82, 186, 428, 501
MaeIII	GTNAC	1 cut(s)	435
MalI	GATC	4 cut(s)	33, 163, 180, 528
MboI	GATC	4 cut(s)	31, 161, 178, 526
MboII	GAAGA	7 cut(s)	98, 235, 238, 398, 620, 656, 680
MhlI	GDGCHC	2 cut(s)	192, 597
MluCI	AATT	4 cut(s)	35, 93, 328, 378
MmeI	TCCRAC	2 cut(s)	442, 547
MnlI	CCTC	9 cut(s)	258, 280, 420, 507, 548, 570, 575, 578, 657
MroXI	GAANNNNTTC	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	3 cut(s)	467, 480, 598
MspR9I	CCNGG	2 cut(s)	481, 599
MwoI	GCNNNNNNNGC	3 cut(s)	76, 314, 374
NciI	CCSGG	2 cut(s)	481, 599
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	4 cut(s)	31, 161, 178, 526
NlaIII	CATG	3 cut(s)	263, 314, 533
NlaIV	GGNNCC	2 cut(s)	138, 596
NmuCI	GTSAC	1 cut(s)	435
NspV	TTCGAA	1 cut(s)	99
PagI	TCATGA	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	362
PflFI	GACNNNGTC	2 cut(s)	21, 126
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	7, 444, 447, 478, 605
PspN4I	GGNNCC	2 cut(s)	138, 596
PspPI	GGNCC	2 cut(s)	464, 625
PstI	CTGCAG	2 cut(s)	145, 370
PsyI	GACNNNGTC	2 cut(s)	21, 126
SatI	GCNGC	5 cut(s)	6, 443, 446, 477, 604
Sau3AI	GATC	4 cut(s)	31, 161, 178, 526
Sau96I	GGNCC	2 cut(s)	464, 625
ScrFI	CCNGG	2 cut(s)	481, 599
SduI	GDGCHC	2 cut(s)	192, 597
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	3 cut(s)	141, 214, 366
SfuI	TTCGAA	1 cut(s)	99
SinI	GGWCC	2 cut(s)	464, 625
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	35, 93, 328, 378
SsiI	CCGC	8 cut(s)	5, 47, 443, 448, 476, 520, 603, 623
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	479, 597
StyI	CCWWGG	1 cut(s)	310
TaiI	ACGT	4 cut(s)	85, 189, 431, 504
TaqI	TCGA	5 cut(s)	73, 99, 155, 498, 504
TasI	AATT	4 cut(s)	35, 93, 328, 378
TauI	GCSGC	4 cut(s)	8, 445, 479, 606
TfiI	GAWTC	1 cut(s)	362
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	435
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	435
TspDTI	ATGAA	2 cut(s)	98, 377
TspRI	CASTG	1 cut(s)	252
Tth111I	GACNNNGTC	2 cut(s)	21, 126
Van91I	CCANNNNNTGG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	464, 625
XapI	RAATTY	2 cut(s)	93, 328
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	9
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.