Rh2BG254600

Calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001949
Physical Location & Seq
Reverse (-)
26315478 .. 26332502
17025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG254600.1

Sequence Viewer

Length: 1299 bp
ATGGCGGTTAGGAAGCAACAGCGTCTTGATGATCGATTAGACCTTGAGCAAATACTTCTTCAAGCAAAACATCGATGGCTACGCCCTGCTGAAATTTGCCATGTTCTTCAAAATCATACAAGATTCTGTGTTTCGGTTGCAGATAAGCCACCGAGTGGAGCATTGTTTCTTTACGATCGGAACGTGATCAGATCTTTCAGAAAAGATGGCTATAGATGGAAGAAGACTAAAGACGGAAAGGCGGTGAAGGAAGCCCACGAGAGACTCCAGGCTGGAGGAGTAGAGGCGTTACATTGCTACTATGCCCATGGAGAAGAAAACGGAAATTTCCAAAGGCGCTGTTATTGGATGATTGAAAAGCGTCTCTGGCACATAGTCCTGGTCCACTACCGAGAAGTAAAGACTTCTGAAGGTAAATTGTCATGTTCATCCAAGTTGTCTATCAATTGGAATATGCATTCAGATACTGCATATCATGCCAGTACTTCATTCCCTGGAGGAGTCAATGCAGATGAGTTACTCAATTCCCTGTGGCCTCCTTGCCATATGAATTTGGATAAACAAAATGATTCTTCTGTGCATAGGCACTCTGATAAGCAAAATGACCCTCGAATATTGAAGAATCGTGACAGTTCTGATCAATGTATGAATACAGAACTAGGAGACCTGACTGAGCTACAGATGTCCAGTTCTAGGGACCACTTGAGTACTATAGCAAGTGAGAATGGGAATGATGGGTCCGGTGCTCTTCAGCCAGTTCAAATAGCTATTCCAGGACCTTCTCTATTCCAGGACCTTCTCTTTAACATTATTGATCTTTCACCAAATTGGGCATATGAAAACTCTGAAACAGAGCCTACCACACAAAAGTGTCCCCAAGAAAAACAAATTCAGCACTCTGAGAGAGATGATCTGGAAGTTGAAGATTTAAGCACTCTTCCTTCTCTGGACCCAAATTCACCCATAGAACAAGATGATTCAAATACAGTTTCTGCAGCAGTTGAAGATTTCTCAGCGGAGGAGTCAATACTCTACGGGCTTCAAGATATTATAGCAAAGTTGGACATCAAAACAAGACTTTGCATACAGGATAGCTTGTTGCAGTTAGCTCAAAATGCAGTGCAAAGGCATCAAACAAGTGATACTAGCAGTGTCAACAGAAACAGCAAGGATGAGCCTGAAATCGTTGCAAAGGAGGAAATCGGCGATTGTAACAGGTACACCAGCATGCCAGATGTTGAGACCGAGACCAATCCTATAGACCTAACTGTGGCTCATTGGCTTTATGGTAGCCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 CG-1 IQ TIG

Protein Analysis

432

Amino Acids

49.08

Weight (kDa)

5.29

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CG-1 PF03859 21 - 132 2.3e-43 CG-1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 155
AciI CCGC 3 cut(s) 5, 242, 1016
AcsI RAATTY 5 cut(s) 93, 325, 550, 888, 955
AcuI CTGAAG 2 cut(s) 429, 734
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 3 cut(s) 484, 709, 1220
AfiI CCNNNNNNNGG 3 cut(s) 155, 693, 1270
AgsI TTSAA 9 cut(s) 62, 110, 356, 619, 761, 923, 981, 1004, 1043
AjnI CCWGG 5 cut(s) 267, 378, 493, 772, 789
AleI CACNNNNGTG 1 cut(s) 868
AluBI AGCT 4 cut(s) 676, 767, 1095, 1109
AluI AGCT 4 cut(s) 676, 767, 1095, 1109
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 5 cut(s) 256, 368, 657, 1235, 1241
AlwNI CAGNNNCTG 2 cut(s) 467, 992
AoxI GGCC 1 cut(s) 533
ApeKI GCWGC 1 cut(s) 995
ApoI RAATTY 5 cut(s) 93, 325, 550, 888, 955
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 6 cut(s) 382, 697, 738, 776, 793, 949
AsuHPI GGTGA 3 cut(s) 256, 813, 951
AvaII GGWCC 6 cut(s) 382, 697, 738, 776, 793, 949
BauI CACGAG 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 748
BbvI GCAGC 1 cut(s) 1007
BccI CCATC 4 cut(s) 69, 200, 210, 728
BciT130I CCWGG 5 cut(s) 269, 380, 495, 774, 791
BclI TGATCA 2 cut(s) 186, 637
BcoDI GTCTC 5 cut(s) 256, 368, 657, 1235, 1241
BfaI CTAG 3 cut(s) 659, 693, 1146
BfmI CTRYAG 5 cut(s) 211, 677, 711, 993, 1257
BfoI RGCGCY 1 cut(s) 340
BglII AGATCT 1 cut(s) 191
BisI GCNGC 1 cut(s) 996
BlsI GCNGC 1 cut(s) 997
BmcAI AGTACT 2 cut(s) 484, 709
Bme1390I CCNGG 5 cut(s) 269, 380, 495, 774, 791
Bme18I GGWCC 6 cut(s) 382, 697, 738, 776, 793, 949
BmgT120I GGNCC 6 cut(s) 382, 697, 738, 776, 793, 949
BmiI GGNNCC 3 cut(s) 698, 739, 951
BmrFI CCNGG 5 cut(s) 269, 380, 495, 774, 791
BmsI GCATC 1 cut(s) 1138
BpiI GAAGAC 1 cut(s) 230
BpmI CTGGAG 3 cut(s) 251, 294, 516
BpuEI CTTGAG 2 cut(s) 65, 724
Bsa29I ATCGAT 2 cut(s) 34, 73
BsaI GGTCTC 3 cut(s) 657, 1235, 1241
BsaJI CCNNGG 2 cut(s) 307, 493
BsaWI WCCGGW 1 cut(s) 740
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 693, 1270
Bse1I ACTGG 3 cut(s) 480, 687, 755
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 5 cut(s) 269, 380, 495, 774, 791
BseCI ATCGAT 2 cut(s) 34, 73
BseDI CCNNGG 2 cut(s) 307, 493
BseGI GGATG 3 cut(s) 354, 428, 1177
BseLI CCNNNNNNNGG 3 cut(s) 155, 693, 1270
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 3 cut(s) 663, 891, 1026
BseNI ACTGG 3 cut(s) 480, 687, 755
BseRI GAGGAG 3 cut(s) 291, 513, 1034
BseXI GCAGC 1 cut(s) 1007
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 1 cut(s) 535
BshVI ATCGAT 2 cut(s) 34, 73
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 748
BsiSI CCGG 1 cut(s) 741
BslFI GGGAC 2 cut(s) 710, 858
BslI CCNNNNNNNGG 3 cut(s) 155, 693, 1270
BsmAI GTCTC 5 cut(s) 256, 368, 657, 1235, 1241
BsmBI CGTCTC 1 cut(s) 368
BsmFI GGGAC 2 cut(s) 710, 858
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 1 cut(s) 535
Bso31I GGTCTC 3 cut(s) 657, 1235, 1241
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 7 cut(s) 31, 175, 186, 191, 637, 814, 910
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 3 cut(s) 5, 242, 1016
BspANI GGCC 1 cut(s) 535
BspCNI CTCAG 3 cut(s) 664, 892, 1025
BspDI ATCGAT 2 cut(s) 34, 73
BspLI GGNNCC 3 cut(s) 698, 739, 951
BspMAI CTGCAG 1 cut(s) 997
BspQI GCTCTTC 1 cut(s) 753
BspTNI GGTCTC 3 cut(s) 657, 1235, 1241
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 3 cut(s) 480, 687, 755
BssECI CCNNGG 2 cut(s) 307, 493
BssMI GATC 7 cut(s) 31, 175, 186, 191, 637, 814, 910
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 307
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 5 cut(s) 269, 380, 495, 774, 791
Bst4CI ACNGT 3 cut(s) 632, 988, 1270
Bst6I CTCTTC 2 cut(s) 753, 942
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 1229
BstDEI CTNAG 3 cut(s) 672, 900, 1012
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 3 cut(s) 354, 428, 1177
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 7 cut(s) 34, 178, 189, 194, 640, 817, 913
BstMAI GTCTC 5 cut(s) 256, 368, 657, 1235, 1241
BstMBI GATC 7 cut(s) 31, 175, 186, 191, 637, 814, 910
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 3 cut(s) 367, 476, 1115
BstNI CCWGG 5 cut(s) 269, 380, 495, 774, 791
BstNSI RCATGY 1 cut(s) 1231
BstSCI CCNGG 5 cut(s) 267, 378, 493, 772, 789
BstSFI CTRYAG 5 cut(s) 211, 677, 711, 993, 1257
BstV1I GCAGC 1 cut(s) 1007
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
Bsu15I ATCGAT 2 cut(s) 34, 73
BsuRI GGCC 1 cut(s) 535
BsuTUI ATCGAT 2 cut(s) 34, 73
BtgI CCRYGG 1 cut(s) 307
BtsCI GGATG 3 cut(s) 354, 428, 1177
BtsI GCAGTG 2 cut(s) 1125, 1156
BtsIMutI CAGTG 2 cut(s) 1125, 1156
Cac8I GCNNGC 1 cut(s) 1229
CaiI CAGNNNCTG 2 cut(s) 467, 992
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 6 cut(s) 382, 697, 738, 776, 793, 949
ClaI ATCGAT 2 cut(s) 34, 73
CseI GACGC 2 cut(s) 11, 350
Csp6I GTAC 3 cut(s) 483, 708, 1219
CviAII CATG 5 cut(s) 101, 308, 423, 476, 1228
CviQI GTAC 3 cut(s) 483, 708, 1219
DdeI CTNAG 3 cut(s) 672, 900, 1012
DpnI GATC 7 cut(s) 33, 177, 188, 193, 639, 816, 912
DpnII GATC 7 cut(s) 31, 175, 186, 191, 637, 814, 910
DraIII CACNNNGTG 1 cut(s) 155
Eam1104I CTCTTC 2 cut(s) 753, 942
EarI CTCTTC 2 cut(s) 753, 942
Eco130I CCWWGG 1 cut(s) 307
Eco31I GGTCTC 3 cut(s) 657, 1235, 1241
Eco47I GGWCC 6 cut(s) 382, 697, 738, 776, 793, 949
Eco57I CTGAAG 2 cut(s) 429, 734
EcoO109I RGGNCCY 2 cut(s) 776, 793
EcoRII CCWGG 5 cut(s) 267, 378, 493, 772, 789
EcoT14I CCWWGG 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 307
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 5 cut(s) 104, 311, 426, 479, 1231
FaqI GGGAC 2 cut(s) 710, 858
FatI CATG 5 cut(s) 100, 307, 422, 475, 1227
FauNDI CATATG 2 cut(s) 546, 835
FbaI TGATCA 2 cut(s) 186, 637
Fnu4HI GCNGC 1 cut(s) 996
FokI GGATG 3 cut(s) 361, 415, 1184
Fsp4HI GCNGC 1 cut(s) 996
FspBI CTAG 3 cut(s) 659, 693, 1146
GlaI GCGC 1 cut(s) 338
GluI GCNGC 1 cut(s) 996
GsuI CTGGAG 3 cut(s) 251, 294, 516
HaeII RGCGCY 1 cut(s) 340
HaeIII GGCC 1 cut(s) 535
HapII CCGG 1 cut(s) 741
HgaI GACGC 2 cut(s) 11, 350
HhaI GCGC 1 cut(s) 339
Hin1II CATG 5 cut(s) 104, 311, 426, 479, 1231
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 1 cut(s) 1156
HindII GTYRAC 1 cut(s) 1156
HinfI GANTC 7 cut(s) 123, 264, 501, 569, 622, 977, 1022
HpaII CCGG 1 cut(s) 741
HphI GGTGA 3 cut(s) 256, 813, 951
Hpy166II GTNNAC 3 cut(s) 385, 1156, 1221
Hpy188I TCNGA 9 cut(s) 180, 191, 200, 409, 463, 592, 637, 847, 901
Hpy188III TCNNGA 5 cut(s) 26, 626, 914, 947, 1043
Hpy8I GTNNAC 3 cut(s) 385, 1156, 1221
HpyAV CCTTC 5 cut(s) 241, 404, 789, 806, 951
HpyCH4III ACNGT 3 cut(s) 632, 988, 1270
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 367, 476, 1115
HpyF3I CTNAG 3 cut(s) 672, 900, 1012
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 5 cut(s) 104, 311, 426, 479, 1231
HspAI GCGC 1 cut(s) 337
Ksp22I TGATCA 2 cut(s) 186, 637
Kzo9I GATC 7 cut(s) 31, 175, 186, 191, 637, 814, 910
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 1 cut(s) 1007
LweI GCATC 1 cut(s) 1138
MaeI CTAG 3 cut(s) 659, 693, 1146
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 4 cut(s) 288, 516, 626, 1211
MalI GATC 7 cut(s) 33, 177, 188, 193, 639, 816, 912
MboI GATC 7 cut(s) 31, 175, 186, 191, 637, 814, 910
MfeI CAATTG 1 cut(s) 445
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 9 cut(s) 93, 325, 416, 445, 523, 550, 826, 888, 955
MlyI GAGTC 3 cut(s) 258, 510, 1031
MmeI TCCRAC 1 cut(s) 1041
MnlI CCTC 7 cut(s) 269, 277, 491, 546, 618, 1012, 1189
Mph1103I ATGCAT 1 cut(s) 459
MseI TTAA 2 cut(s) 804, 929
MslI CAYNNNNRTG 2 cut(s) 868, 1226
MspA1I CMGCKG 1 cut(s) 1016
MspI CCGG 1 cut(s) 741
MspR9I CCNGG 5 cut(s) 269, 380, 495, 774, 791
MunI CAATTG 1 cut(s) 445
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 5 cut(s) 269, 380, 495, 774, 791
MwoI GCNNNNNNNGC 3 cut(s) 367, 476, 1115
NcoI CCATGG 1 cut(s) 307
NdeI CATATG 2 cut(s) 546, 835
NdeII GATC 7 cut(s) 31, 175, 186, 191, 637, 814, 910
NlaIII CATG 5 cut(s) 104, 311, 426, 479, 1231
NlaIV GGNNCC 3 cut(s) 698, 739, 951
NmuCI GTSAC 1 cut(s) 626
NsiI ATGCAT 1 cut(s) 459
NspI RCATGY 1 cut(s) 1231
OliI CACNNNNGTG 1 cut(s) 868
PaeI GCATGC 1 cut(s) 1231
PciSI GCTCTTC 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 4 cut(s) 123, 569, 622, 977
PflMI CCANNNNNTGG 1 cut(s) 155
PfoI TCCNGGA 2 cut(s) 772, 789
PkrI GCNGC 1 cut(s) 997
Ple19I CGATCG 1 cut(s) 178
PleI GAGTC 3 cut(s) 258, 509, 1030
PpsI GAGTC 3 cut(s) 258, 509, 1030
PpuMI RGGWCCY 2 cut(s) 776, 793
Psp5II RGGWCCY 2 cut(s) 776, 793
Psp6I CCWGG 5 cut(s) 267, 378, 493, 772, 789
PspGI CCWGG 5 cut(s) 267, 378, 493, 772, 789
PspN4I GGNNCC 3 cut(s) 698, 739, 951
PspPI GGNCC 6 cut(s) 382, 697, 738, 776, 793, 949
PspPPI RGGWCCY 2 cut(s) 776, 793
PstI CTGCAG 1 cut(s) 997
PstNI CAGNNNCTG 2 cut(s) 467, 992
PsuI RGATCY 1 cut(s) 191
PvuI CGATCG 1 cut(s) 178
RsaI GTAC 3 cut(s) 484, 709, 1220
RsaNI GTAC 3 cut(s) 483, 708, 1219
RseI CAYNNNNRTG 2 cut(s) 868, 1226
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 2 cut(s) 804, 929
SatI GCNGC 1 cut(s) 996
Sau3AI GATC 7 cut(s) 31, 175, 186, 191, 637, 814, 910
Sau96I GGNCC 6 cut(s) 382, 697, 738, 776, 793, 949
ScaI AGTACT 2 cut(s) 484, 709
SchI GAGTC 3 cut(s) 258, 510, 1031
ScrFI CCNGG 5 cut(s) 269, 380, 495, 774, 791
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 1 cut(s) 1138
SfcI CTRYAG 5 cut(s) 211, 677, 711, 993, 1257
SinI GGWCC 6 cut(s) 382, 697, 738, 776, 793, 949
SmiMI CAYNNNNRTG 2 cut(s) 868, 1226
SmlI CTYRAG 2 cut(s) 44, 703
SmoI CTYRAG 2 cut(s) 44, 703
SphI GCATGC 1 cut(s) 1231
Sse9I AATT 9 cut(s) 93, 325, 416, 445, 523, 550, 826, 888, 955
SsiI CCGC 3 cut(s) 5, 242, 1016
SspI AATATT 1 cut(s) 615
SspMI CTAG 3 cut(s) 659, 693, 1146
StyD4I CCNGG 5 cut(s) 267, 378, 493, 772, 789
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 3 cut(s) 632, 988, 1270
TaiI ACGT 1 cut(s) 186
TaqI TCGA 3 cut(s) 34, 73, 610
TaqII GACCGA 1 cut(s) 1259
TasI AATT 9 cut(s) 93, 325, 416, 445, 523, 550, 826, 888, 955
TatI WGTACW 2 cut(s) 482, 707
TfiI GAWTC 4 cut(s) 123, 569, 622, 977
Tru1I TTAA 2 cut(s) 804, 929
Tru9I TTAA 2 cut(s) 804, 929
TscAI CASTG 2 cut(s) 1125, 1156
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 1 cut(s) 995
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 5 cut(s) 417, 477, 563, 662, 852
TspGWI ACGGA 2 cut(s) 249, 336
TspRI CASTG 2 cut(s) 1125, 1156
Van91I CCANNNNNTGG 1 cut(s) 155
VpaK11BI GGWCC 6 cut(s) 382, 697, 738, 776, 793, 949
XapI RAATTY 5 cut(s) 93, 325, 550, 888, 955
XceI RCATGY 1 cut(s) 1231
XspI CTAG 3 cut(s) 659, 693, 1146
ZrmI AGTACT 2 cut(s) 484, 709
Zsp2I ATGCAT 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.