Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002718.1

Orthogroup ID

OG0001949

Physical Location & Seq

Genomic Coordinates Forward (+)

15646 .. 16584

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002718.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgaaagacttgagattcgaacctccaacctctcgcacaacaacccaactccccaccactagagaacaaactgttctcggtgaagaggtcggaggaggtgagggagtcgcggcggccgggggaggcagggggagaagagaatgggagggcggcatcggtggactgacgtggcgaggggatcatgacaggaaagagagagttaccggaggggaggaggcgatgggctccggggcggcgaagaacccgacttggcggaccttcgggtcgctgatgaagaagctgaaagaaagaaagcaggggaagaagaagctgaaaaagaaaaacaagaaagacaaaaagaaagaaagaaagcaaaaaaaaaaaaagaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.72

Weight (kDa)

10.52

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22300 AT2G22300 AT2G22300
fragaria_vesca	FvH4_1g20721 FvH4_1g20721 FvH4_1g20730 FvH4_1g20730
malus_domestica	MD01G1031100.v1.1 MD15G1318400.v1.1
prunus_persica	Prupe.6G148400_v2.0.a1 Prupe.6G187700_v2.0.a1 Prupe.6G187700_v2.0.a1
pyrus_communis	pycom01g05850 pycom12g03400 pycom15g28500
rosa_chinensis	RchiOBHm_Chr2g0113241 RchiOBHm_Chr2g0113251 RchiOBHm_Chr2g0113261 RchiOBHm_Chr2g0113351
rosa_laevigata	RLG00000018051
rosa_multiflora	Rmu_sc0001287.1_g000018 Rmu_sc0001702.1_g000026 Rmu_sc0002718.1_g000004 Rmu_sc0003692.1_g000032 Rmu_sc0005004.1_g000003 Rmu_sc0005949.1_g000007 Rmu_sc0007415.1_g000004 Rmu_sc0008490.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129330 Rroxscaffold_2G00129410 Rroxscaffold_2G00129480 Rroxscaffold_2G00129820 Rroxscaffold_2G00129840
rosa_rugosa	Rorug02G0186100 Rorug02G0186200 Rorug02G0186400
rosa_samantha	Rh2AG240600 Rh2AG241000 Rh2BG254600 Rh2BG255100 Rh2CG244700 Rh2CG245300 Rh2DG248600 Rh2DG249000
rosa_wichuraiana	Rw2G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	262
AccII	CGCG	1 cut(s)	110
AciI	CCGC	5 cut(s)	110, 113, 150, 233, 253
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	114
AjiI	CACGTC	1 cut(s)	168
AluBI	AGCT	2 cut(s)	280, 310
AluI	AGCT	2 cut(s)	280, 310
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	114
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	2 cut(s)	118, 229
AsuHPI	GGTGA	2 cut(s)	92, 110
AsuII	TTCGAA	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	227
BccI	CCATC	1 cut(s)	214
BcnI	CCSGG	2 cut(s)	118, 229
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	4 cut(s)	111, 114, 151, 234
BlsI	GCNGC	4 cut(s)	112, 115, 152, 235
Bme1390I	CCNGG	2 cut(s)	118, 229
Bme18I	GGWCC	1 cut(s)	255
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	118, 229
BmsI	GCATC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	118, 229
BsaJI	CCNNGG	2 cut(s)	117, 228
BsaWI	WCCGGW	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	117, 228
BseRI	GAGGAG	2 cut(s)	108, 227
BseX3I	CGGCCG	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	117, 204, 228
BsnI	GGCC	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	5 cut(s)	110, 113, 150, 233, 253
BspANI	GGCC	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	117, 228
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	78, 130
BstBI	TTCGAA	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	110
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMCI	CGRYCG	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	116, 227
BstUI	CGCG	1 cut(s)	110
BstZI	CGGCCG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	233
BtrI	CACGTC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	255
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	4 cut(s)	116, 225, 280, 310
CviKI_1	RGCY	4 cut(s)	116, 225, 280, 310
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DrdI	GACNNNNNNGTC	1 cut(s)	262
DseDI	GACNNNNNNGTC	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	114
EagI	CGGCCG	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	78, 130
EarI	CTCTTC	2 cut(s)	78, 130
EciI	GGCGGA	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	255
Eco52I	CGGCCG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	1 cut(s)	185
FaiI	YATR	1 cut(s)	183
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	111, 114, 151, 234
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	111, 114, 151, 234
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	4 cut(s)	111, 114, 151, 234
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	3 cut(s)	117, 204, 228
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	2 cut(s)	15, 105
HpaII	CCGG	3 cut(s)	117, 204, 228
HphI	GGTGA	2 cut(s)	92, 110
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	6 cut(s)	112, 130, 172, 217, 241, 281
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	6 cut(s)	95, 147, 250, 286, 313, 316
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	2 cut(s)	50, 70
MseI	TTAA	1 cut(s)	370
MspI	CCGG	3 cut(s)	117, 204, 228
MspR9I	CCNGG	2 cut(s)	118, 229
MvnI	CGCG	1 cut(s)	110
NciI	CCSGG	2 cut(s)	118, 229
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	18
PagI	TCATGA	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	4 cut(s)	112, 115, 152, 235
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	370
SatI	GCNGC	4 cut(s)	111, 114, 151, 234
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	118, 229
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	8 cut(s)	25, 32, 90, 100, 170, 260, 282, 312
SfaNI	GCATC	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	18
SinI	GGWCC	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	1 cut(s)	367
SsiI	CCGC	5 cut(s)	110, 113, 150, 233, 253
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	116, 227
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	18
TasI	AATT	1 cut(s)	367
TauI	GCSGC	4 cut(s)	113, 116, 153, 236
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	370
Tru9I	TTAA	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	17, 287
VpaK11BI	GGWCC	1 cut(s)	255
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.