Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003692.1

Orthogroup ID

OG0001949

Physical Location & Seq

Genomic Coordinates Reverse (-)

125800 .. 127358

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003692.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgcttatcgggacgggaactcttgtgttggatcttgattgcttcggggtgaagaatcttaagttcctgcacattaatcggcgtaggcgtaggaagtggaggctgtgggggaggaggcggggaagaggtcagcaaagtgatggagtcgcggcggccggaggaggtggggggaacgggagagaagagaacgggatgggcggcgtcggaggagtgacgtccggagggggaaatgttggagacgggaggggaggaggcgatgggctccggggcggcgcagaacccgacttggaggaccttcgggtcgctgacgaagaagctgaaagaaagcaaagggaagaagaagctgaaaaagaaaaacaagaaagaaagaaagcaaaaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.66

Weight (kDa)

9.83

Isoelectric Point (pI)

65.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22300 AT2G22300 AT2G22300
fragaria_vesca	FvH4_1g20721 FvH4_1g20721 FvH4_1g20730 FvH4_1g20730
malus_domestica	MD01G1031100.v1.1 MD15G1318400.v1.1
prunus_persica	Prupe.6G148400_v2.0.a1 Prupe.6G187700_v2.0.a1 Prupe.6G187700_v2.0.a1
pyrus_communis	pycom01g05850 pycom12g03400 pycom15g28500
rosa_chinensis	RchiOBHm_Chr2g0113241 RchiOBHm_Chr2g0113251 RchiOBHm_Chr2g0113261 RchiOBHm_Chr2g0113351
rosa_laevigata	RLG00000018051
rosa_multiflora	Rmu_sc0001287.1_g000018 Rmu_sc0001702.1_g000026 Rmu_sc0002718.1_g000004 Rmu_sc0003692.1_g000032 Rmu_sc0005004.1_g000003 Rmu_sc0005949.1_g000007 Rmu_sc0007415.1_g000004 Rmu_sc0008490.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129330 Rroxscaffold_2G00129410 Rroxscaffold_2G00129480 Rroxscaffold_2G00129820 Rroxscaffold_2G00129840
rosa_rugosa	Rorug02G0186100 Rorug02G0186200 Rorug02G0186400
rosa_samantha	Rh2AG240600 Rh2AG241000 Rh2BG254600 Rh2BG255100 Rh2CG244700 Rh2CG245300 Rh2DG248600 Rh2DG249000
rosa_wichuraiana	Rw2G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AatII	GACGTC	1 cut(s)	218
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	218
AciI	CCGC	5 cut(s)	118, 149, 152, 198, 270
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	153
AcyI	GRCGYC	2 cut(s)	201, 215
AflII	CTTAAG	1 cut(s)	59
AluBI	AGCT	2 cut(s)	317, 344
AluI	AGCT	2 cut(s)	317, 344
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	39
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	1 cut(s)	153
AseI	ATTAAT	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	264
BccI	CCATC	3 cut(s)	134, 187, 251
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	59
BisI	GCNGC	4 cut(s)	150, 153, 199, 271
BlsI	GCNGC	4 cut(s)	151, 154, 200, 272
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	266
BsaHI	GRCGYC	2 cut(s)	201, 215
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	198
BseRI	GAGGAG	4 cut(s)	127, 174, 222, 264
BseX3I	CGGCCG	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	156, 219, 265
BslFI	GGGAC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	231
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	5 cut(s)	118, 149, 152, 198, 270
BspANI	GGCC	1 cut(s)	155
BspEI	TCCGGA	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	2 cut(s)	201, 215
Bst6I	CTCTTC	2 cut(s)	118, 177
BstACI	GRCGYC	2 cut(s)	201, 215
BstAFI	CTTAAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	31
BstMCI	CGRYCG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	155
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	198
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	190
CviJI	RGCY	5 cut(s)	103, 155, 262, 317, 344
CviKI_1	RGCY	5 cut(s)	103, 155, 262, 317, 344
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	118, 177
EarI	CTCTTC	2 cut(s)	118, 177
EclXI	CGGCCG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	292
Eco52I	CGGCCG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	231
FaqI	GGGAC	1 cut(s)	25
FauI	CCCGC	1 cut(s)	111
Fnu4HI	GCNGC	4 cut(s)	150, 153, 199, 271
FokI	GGATG	1 cut(s)	205
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	4 cut(s)	150, 153, 199, 271
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	150, 153, 199, 271
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	3 cut(s)	156, 219, 265
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	275
Hin1I	GRCGYC	2 cut(s)	201, 215
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	2 cut(s)	55, 144
HpaII	CCGG	3 cut(s)	156, 219, 265
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	3 cut(s)	10, 35, 219
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	70
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	2 cut(s)	201, 215
HspAI	GCGC	1 cut(s)	273
Kpn2I	TCCGGA	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	4 cut(s)	80, 169, 232, 278
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	6 cut(s)	64, 135, 194, 323, 347, 350
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	3 cut(s)	9, 184, 214
MroI	TCCGGA	1 cut(s)	218
MseI	TTAA	2 cut(s)	60, 75
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	3 cut(s)	156, 219, 265
MspR9I	CCNGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	149
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	31
NlaIV	GGNNCC	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	4 cut(s)	151, 154, 200, 272
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	292
PspPPI	RGGWCCY	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	60, 75
SatI	GCNGC	4 cut(s)	150, 153, 199, 271
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	6 cut(s)	130, 166, 218, 297, 319, 346
SinI	GGWCC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SsiI	CCGC	5 cut(s)	118, 149, 152, 198, 270
StyD4I	CCNGG	1 cut(s)	264
TaiI	ACGT	1 cut(s)	218
TauI	GCSGC	4 cut(s)	152, 155, 201, 273
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	60, 75
Tru9I	TTAA	2 cut(s)	60, 75
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	75
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.