RchiOBHm_Chr2g0113261

Calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001949
Physical Location & Seq
Reverse (-)
25425103 .. 25426592
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48661

Sequence Viewer

Length: 456 bp
ATGGCGGCTAGGAAGCGACAGCGTCTTGATGATCAATTAGAACTTCCGCAAATACTTTTACAAGCAAAGCATCGATGGCTACGTCCTGCTGAAATTTTCGAAGTTCTTCAAAATCATTCAAGATTTTGTCTTTCGGAGCCTGCAGATAAGCCATCGAGTATGACTTTTGATTGCATTTGCATGTCTTTCAGAAAAGATGGCTATAGATGGAAAAAGACTAAAGATGGAAAGGCAGTGAAGGAAGCCCATGAGAGGCTCAAGGCTGGAGGAGTTGAGGCATTACATTGCTACTATGCCCATGGAGAAGAAAATGAGAATTTCCAAAGACGCTGTTATTGGATGATTGAAGAGCCTCTCTCGCACATAGTTCTGGTCCACTACCGAGAAGTAAAGGTTACGCATCCTTCGTATAGTGTTCCCAATTATTTATTGTGTTTCTTATACCAACTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 CG-1 IQ TIG

Protein Analysis

151

Amino Acids

18.0

Weight (kDa)

8.72

Isoelectric Point (pI)

64.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CG-1 PF03859 21 - 129 9.8e-38 CG-1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 47
AcsI RAATTY 2 cut(s) 93, 316
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 3 cut(s) 110, 120, 347
ApoI RAATTY 2 cut(s) 93, 316
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 99
AvaII GGWCC 1 cut(s) 373
BccI CCATC 5 cut(s) 69, 160, 191, 201, 218
BclI TGATCA 1 cut(s) 31
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 141, 202
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 138
BmsI GCATC 2 cut(s) 79, 409
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 283
BseCI ATCGAT 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 345, 400
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMI GCAATG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 282
BshVI ATCGAT 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 252
Bsp119I TTCGAA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 31
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 2 cut(s) 5, 47
BspDI ATCGAT 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 145
BspQI GCTCTTC 1 cut(s) 342
BspT104I TTCGAA 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 342
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 141
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 2 cut(s) 345, 400
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 76, 358
BstNSI RCATGY 1 cut(s) 184
BstSFI CTRYAG 2 cut(s) 141, 202
Bsu15I ATCGAT 1 cut(s) 73
BsuTUI ATCGAT 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 2 cut(s) 345, 400
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 373
ClaI ATCGAT 1 cut(s) 73
CseI GACGC 2 cut(s) 11, 336
CviAII CATG 3 cut(s) 181, 248, 299
CviJI RGCY 9 cut(s) 8, 79, 139, 151, 201, 245, 256, 263, 352
CviKI_1 RGCY 9 cut(s) 8, 79, 139, 151, 201, 245, 256, 263, 352
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 184, 251, 302
FaiI YATR 9 cut(s) 161, 182, 204, 249, 294, 300, 365, 411, 442
FatI CATG 3 cut(s) 180, 247, 298
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 352, 387
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 285
HgaI GACGC 2 cut(s) 11, 336
Hin1II CATG 3 cut(s) 184, 251, 302
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 2 cut(s) 136, 191
Hpy188III TCNNGA 2 cut(s) 26, 120
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 2 cut(s) 232, 414
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 143, 174, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 358
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 3 cut(s) 184, 251, 302
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 31
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 4 cut(s) 99, 153, 249, 356
LweI GCATC 2 cut(s) 79, 409
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 394
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 3 cut(s) 98, 317, 359
MluCI AATT 4 cut(s) 35, 93, 316, 421
MnlI CCTC 4 cut(s) 246, 260, 268, 363
MroXI GAANNNNTTC 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 76, 358
NcoI CCATGG 1 cut(s) 298
NdeII GATC 1 cut(s) 31
NlaIII CATG 3 cut(s) 184, 251, 302
NlaIV GGNNCC 1 cut(s) 138
NspI RCATGY 1 cut(s) 184
NspV TTCGAA 1 cut(s) 99
PciSI GCTCTTC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 404
PdmI GAANNNNTTC 1 cut(s) 105
PflFI GACNNNGTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 373
PstI CTGCAG 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 342
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 373
SetI ASST 2 cut(s) 85, 396
SfaNI GCATC 2 cut(s) 79, 409
SfcI CTRYAG 2 cut(s) 141, 202
SfuI TTCGAA 1 cut(s) 99
SinI GGWCC 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 4 cut(s) 35, 93, 316, 421
SsiI CCGC 2 cut(s) 5, 47
SspMI CTAG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 298
TaiI ACGT 1 cut(s) 85
TaqI TCGA 3 cut(s) 73, 99, 155
TasI AATT 4 cut(s) 35, 93, 316, 421
TauI GCSGC 1 cut(s) 8
TscAI CASTG 1 cut(s) 240
TspRI CASTG 1 cut(s) 240
Tth111I GACNNNGTC 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 373
XapI RAATTY 2 cut(s) 93, 316
XceI RCATGY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.