Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

12833991 .. 12836141

Gene Structure 2151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGTCATTTTACATGAGGATAAAATTAGTACTTAACTTTTTATTAAAGACGGATGAGGAAATAAGATATTGGGGCCCAAACAACAATATAAGCCTGACTAACAACGAGAAAAGGAGTATTCAACCAAGTCTAAGCCCAACTCCAAGTAAAACCTGTCAAACAGTTAATACGAGGAGAATTATCTCCTTTCTTATGCTTATCTCCTTCCTTTCTCTTCTCTTATATATTATGTTAACGTGTTTAAATCGTAACCATAGTTTCTGCATCTGCTTCTCAGTTGTGAACTCAAAATCTCAGAATCTGTGTGTTTTTGGAAATGCAATGCGCCATGGAAGGCCTTTCCTGGTCAAAGACCACCACCACCACCACGGCGCCTCCCAGCTGGGAGACATACTCCTGGTGGCCGCCATCACCAAGACCGTCTCAACCTCCGGCACCCGCAACCTCCCGGACCCCCACACCCTTCCGCTCTCCGAGCCCATCCTCTTCCAAATCCTCCGCGCCCAGTCCCTCCACCCCTCCAAAAAACTCGACTTCTTCAAATGGTGCTCTCTCACGCATAACATCAAACCCTCGGCGCGCACCTACTCCCACATCCTCCGCACCACCTCCCGCGCGGGATTCCTCCATGAGGTCCCTCAATTGCTTCACTCCATGAAGGAGGACGGCGTCGTGGTCGATTCCCAGACCTTCAAAGCCCTGCTTGACGCGTTTATCCGGTCCGGTAAGTTCGATTACGCGCTTGAAATTTTGGATATTATGGAAGATGTTGGTGCTGGGTTGAACACCGATATATATAACTCGGTTCTTGTTGCTCTGGTTAGGAAAAACCAGGTGGGTTTGGCCACGGCCATTTTGTTTAAGCTTCTGGAGGGAGGGGATTCGATTCAGGTGCCGAATTCGATTGCCTGCAATGAGTTGCTGGTTGCTCTTAGAAAATCTGACATGATTGTTGAGTTTAAGCAAGTTTTTAATAAGCTTAGAGAGAGTGAGAGGTTTGAGATGGATACTTGGGGCTATAATATTTGCATTCATGCATTTGGGTGTTGGGGTGATTTGGGTATTAGTCTGAATCTGTATAGAGAGATGAAAGACTCTAACTTGGATAACATCGGGCCGGATTTGTCTACATATAATAGCCTCATTCATGTGCTCTGCTTGGTGGGGAAAGTGAATGATGCACTTACTATATGGGAGGAATTGAAAGGCTCCGGCCACGAGCCGGATGCAATTACCTATAGAATTCTTATTCAGGGGTGTTGTAGGTGTTATCGAATAGACGATGCCACTAAGATTTTTAGTGAAATGCAGCTCAATGGATATATCCCTGGTACCATTGTTTATAATTCTTTACTAGATGGCTTATTCAAGGCCAGGAAGGTTAATGATGGCTGCCAGTTATTTGAGAAAATGGTTCAGAATGGGGTGAGAGCCTCGACGTGGACGTATAATATTCTCATTGATGGTTTGTTCAGGAATGGAAGGGCAGAGGCTGCGTACACACTATTTTGTGACTTAAAGAAGAAGGGTCAGTTTGTTGATGGTGTAACATATAGCATTGTGGTTTTGCAACTTTGTAAGGAGGGCCTGCTTGAGGAAGCACTAGGATTGGTGGAAGAAATGGAAAGGAGAGGCTTTACTGTTGATTTAGTTACTATTTCGTCACTTGTGATTGGGCTGTATAAAGAAGGACGGTGGGATTGGACGGAGAAGCTCATGAAGCACATTAGAGATGGTAACCTAGTGCCGAGTGTTCTTAAATGGAAGGTTGATATGGAGGCTTCGCTGAAAAATCCAGAGAGAAATAGAAAGGATTATACACCTTTGTTCCCATGTAAAGGCGACTTGAGCGAGATTATGAGTTTAATAAAGTCTGCAAAATCAACAATGGATGCAGACCTAGAGTCAGAGGATGCCAGGGGATCAATTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

645

Amino Acids

72.72

Weight (kDa)

7.81

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	198 - 362	3.6e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	215 - 273	6.7e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	351 - 509	2.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	365 - 420	5.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	371 - 401	2.9e-07	PPR repeat
PPR_2	PF13041	373 - 422	2.3e-15	PPR repeat family
PPR_1	PF12854	405 - 437	1.7e-10	PPR repeat
PPR_2	PF13041	443 - 491	5.9e-14	PPR repeat family
PPR_1	PF12854	475 - 504	1.9e-06	PPR repeat
PPR_2	PF13041	480 - 527	2.6e-12	PPR repeat family
PPR	PF01535	482 - 510	4.3e-06	PPR repeat
PPR_1	PF12854	510 - 542	2.5e-06	PPR repeat
PPR	PF01535	516 - 546	3.5e-06	PPR repeat
PPR_2	PF13041	525 - 562	4.3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1344
Acc65I	GGTACC	1 cut(s)	1331
AccB1I	GGYRCC	4 cut(s)	371, 434, 892, 1331
AccBSI	CCGCTC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	1127
AccII	CGCG	6 cut(s)	501, 580, 615, 617, 710, 740
AciI	CCGC	7 cut(s)	405, 439, 467, 499, 601, 613, 617
AclWI	GGATC	1 cut(s)	1930
AcoI	YGGCCR	4 cut(s)	402, 843, 849, 1213
AcsI	RAATTY	3 cut(s)	747, 898, 1242
AcyI	GRCGYC	2 cut(s)	372, 669
AfaI	GTAC	3 cut(s)	30, 1333, 1499
AfiI	CCNNNNNNNGG	5 cut(s)	631, 1222, 1440, 1594, 1838
AflIII	ACRYGT	2 cut(s)	236, 708
AgsI	TTSAA	7 cut(s)	122, 541, 694, 746, 784, 1204, 1369
AhdI	GACNNNNNGTC	1 cut(s)	1903
AjiI	CACGTC	1 cut(s)	1440
AjnI	CCWGG	6 cut(s)	342, 396, 831, 1327, 1373, 1916
AluBI	AGCT	5 cut(s)	382, 865, 979, 1312, 1714
AluI	AGCT	5 cut(s)	382, 865, 979, 1312, 1714
Alw21I	GWGCWC	2 cut(s)	551, 1155
Alw26I	GTCTC	2 cut(s)	381, 427
AlwI	GGATC	1 cut(s)	1930
AlwNI	CAGNNNCTG	2 cut(s)	301, 1493
AoxI	GGCC	9 cut(s)	73, 335, 402, 843, 849, 1115, 1213, 1371, 1585
ApaI	GGGCCC	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	1309, 1392, 1493
ApoI	RAATTY	3 cut(s)	747, 898, 1242
Asp718I	GGTACC	1 cut(s)	1331
AspLEI	GCGC	7 cut(s)	327, 374, 503, 580, 582, 617, 742
AspS9I	GGNCC	7 cut(s)	73, 74, 451, 634, 720, 1115, 1585
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	403, 1064, 1438
AvaII	GGWCC	3 cut(s)	451, 634, 720
BaeGI	GKGCMC	1 cut(s)	77
BaeI	ACNNNNGTAYC	2 cut(s)	1323, 1356
BalI	TGGCCA	1 cut(s)	845
BanI	GGYRCC	4 cut(s)	371, 434, 892, 1331
BanII	GRGCYC	2 cut(s)	77, 480
BauI	CACGAG	1 cut(s)	1217
Bbv12I	GWGCWC	2 cut(s)	551, 1155
BbvI	GCAGC	3 cut(s)	1321, 1379, 1480
BccI	CCATC	8 cut(s)	416, 488, 997, 1352, 1382, 1457, 1535, 1727
BceAI	ACGGC	3 cut(s)	385, 682, 864
BcgI	CGANNNNNNTGC	4 cut(s)	874, 908, 1208, 1242
BciT130I	CCWGG	6 cut(s)	344, 398, 833, 1329, 1375, 1918
BciVI	GTATCC	1 cut(s)	1000
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	381, 427
BfaI	CTAG	4 cut(s)	1355, 1604, 1742, 1901
BfmI	CTRYAG	1 cut(s)	1237
BfoI	RGCGCY	1 cut(s)	375
BfuI	GTATCC	1 cut(s)	1000
BisI	GCNGC	4 cut(s)	405, 1310, 1393, 1494
BlsI	GCNGC	4 cut(s)	406, 1311, 1394, 1495
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	7 cut(s)	344, 398, 449, 833, 1329, 1375, 1918
Bme18I	GGWCC	3 cut(s)	451, 634, 720
BmeRI	GACNNNNNGTC	1 cut(s)	1903
BmgBI	CACGTC	1 cut(s)	1440
BmgT120I	GGNCC	7 cut(s)	73, 74, 451, 634, 720, 1115, 1585
BmiI	GGNNCC	9 cut(s)	74, 75, 373, 436, 453, 636, 894, 1210, 1333
BmrFI	CCNGG	7 cut(s)	344, 398, 449, 833, 1329, 1375, 1918
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	6 cut(s)	273, 1168, 1216, 1273, 1882, 1903
BmuI	ACTGGG	1 cut(s)	499
BplI	GAGNNNNNCTC	2 cut(s)	378, 410
BpmI	CTGGAG	1 cut(s)	890
BpuEI	CTTGAG	2 cut(s)	1613, 1867
BpuMI	CCSGG	1 cut(s)	449
BsaHI	GRCGYC	2 cut(s)	372, 669
BsaJI	CCNNGG	6 cut(s)	328, 367, 573, 846, 1327, 1917
BsaWI	WCCGGW	2 cut(s)	717, 722
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	5 cut(s)	631, 1222, 1440, 1594, 1838
Bse1I	ACTGG	2 cut(s)	505, 1396
Bse3DI	GCAATG	2 cut(s)	327, 919
BseBI	CCWGG	6 cut(s)	344, 398, 833, 1329, 1375, 1918
BseDI	CCNNGG	6 cut(s)	328, 367, 573, 846, 1327, 1917
BseGI	GGATG	6 cut(s)	58, 480, 594, 1231, 1897, 1918
BseLI	CCNNNNNNNGG	5 cut(s)	631, 1222, 1440, 1594, 1838
BseMI	GCAATG	2 cut(s)	327, 919
BseMII	CTCAG	2 cut(s)	288, 308
BseNI	ACTGG	2 cut(s)	505, 1396
BsePI	GCGCGC	1 cut(s)	578
BseRI	GAGGAG	1 cut(s)	187
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	1321, 1379, 1480
BseYI	CCCAGC	3 cut(s)	378, 382, 776
Bsh1236I	CGCG	6 cut(s)	501, 580, 615, 617, 710, 740
BshFI	GGCC	9 cut(s)	75, 337, 404, 845, 851, 1117, 1215, 1373, 1587
BshNI	GGYRCC	4 cut(s)	371, 434, 892, 1331
BsiHKAI	GWGCWC	2 cut(s)	551, 1155
BsiSI	CCGG	7 cut(s)	432, 449, 718, 723, 1118, 1212, 1223
BslFI	GGGAC	2 cut(s)	493, 620
BslI	CCNNNNNNNGG	5 cut(s)	631, 1222, 1440, 1594, 1838
BsmAI	GTCTC	2 cut(s)	381, 427
BsmBI	CGTCTC	1 cut(s)	427
BsmFI	GGGAC	2 cut(s)	493, 620
BsmI	GAATGC	1 cut(s)	1029
BsnI	GGCC	9 cut(s)	75, 337, 404, 845, 851, 1117, 1215, 1373, 1587
Bsp120I	GGGCCC	1 cut(s)	73
Bsp1286I	GDGCHC	4 cut(s)	77, 480, 551, 1155
Bsp143I	GATC	1 cut(s)	1922
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	7 cut(s)	405, 439, 467, 499, 601, 613, 617
BspANI	GGCC	9 cut(s)	75, 337, 404, 845, 851, 1117, 1215, 1373, 1587
BspCNI	CTCAG	2 cut(s)	287, 307
BspFNI	CGCG	6 cut(s)	501, 580, 615, 617, 710, 740
BspHI	TCATGA	1 cut(s)	1716
BspLI	GGNNCC	9 cut(s)	74, 75, 373, 436, 453, 636, 894, 1210, 1333
BspPI	GGATC	1 cut(s)	1930
BspT107I	GGYRCC	4 cut(s)	371, 434, 892, 1331
BsrBI	CCGCTC	1 cut(s)	469
BsrDI	GCAATG	2 cut(s)	327, 919
BsrI	ACTGG	2 cut(s)	505, 1396
BssECI	CCNNGG	6 cut(s)	328, 367, 573, 846, 1327, 1917
BssHII	GCGCGC	1 cut(s)	578
BssMI	GATC	1 cut(s)	1922
BssNI	GRCGYC	2 cut(s)	372, 669
BssSI	CACGAG	1 cut(s)	1217
BssT1I	CCWWGG	1 cut(s)	328
Bst2BI	CACGAG	1 cut(s)	1217
Bst2UI	CCWGG	6 cut(s)	344, 398, 833, 1329, 1375, 1918
Bst4CI	ACNGT	4 cut(s)	163, 421, 1642, 1695
Bst6I	CTCTTC	2 cut(s)	219, 491
BstACI	GRCGYC	2 cut(s)	372, 669
BstAPI	GCANNNNNTGC	1 cut(s)	1493
BstC8I	GCNNGC	3 cut(s)	580, 910, 1589
BstDEI	CTNAG	6 cut(s)	131, 274, 294, 932, 980, 1290
BstDSI	CCRYGG	3 cut(s)	328, 367, 846
BstEII	GGTNACC	1 cut(s)	1736
BstENI	CCTNNNNNAGG	2 cut(s)	629, 1592
BstF5I	GGATG	6 cut(s)	58, 480, 594, 1231, 1897, 1918
BstFNI	CGCG	6 cut(s)	501, 580, 615, 617, 710, 740
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	7 cut(s)	327, 374, 503, 580, 582, 617, 742
BstKTI	GATC	1 cut(s)	1925
BstMAI	GTCTC	2 cut(s)	381, 427
BstMBI	GATC	1 cut(s)	1922
BstMWI	GCNNNNNNNGC	4 cut(s)	475, 1493, 1720, 1848
BstNI	CCWGG	6 cut(s)	344, 398, 833, 1329, 1375, 1918
BstPI	GGTNACC	1 cut(s)	1736
BstSCI	CCNGG	7 cut(s)	342, 396, 447, 831, 1327, 1373, 1916
BstSFI	CTRYAG	1 cut(s)	1237
BstSLI	GKGCMC	1 cut(s)	77
BstUI	CGCG	6 cut(s)	501, 580, 615, 617, 710, 740
BstV1I	GCAGC	3 cut(s)	1321, 1379, 1480
BsuI	GTATCC	1 cut(s)	1000
BsuRI	GGCC	9 cut(s)	75, 337, 404, 845, 851, 1117, 1215, 1373, 1587
BtgI	CCRYGG	3 cut(s)	328, 367, 846
BtrI	CACGTC	1 cut(s)	1440
BtsCI	GGATG	6 cut(s)	58, 480, 594, 1231, 1897, 1918
Cac8I	GCNNGC	3 cut(s)	580, 910, 1589
CaiI	CAGNNNCTG	2 cut(s)	301, 1493
CciI	TCATGA	1 cut(s)	1716
CfoI	GCGC	7 cut(s)	327, 374, 503, 580, 582, 617, 742
Cfr13I	GGNCC	7 cut(s)	73, 74, 451, 634, 720, 1115, 1585
CpoI	CGGWCCG	1 cut(s)	720
CseI	GACGC	2 cut(s)	658, 716
CsiI	ACCWGGT	1 cut(s)	831
Csp6I	GTAC	3 cut(s)	29, 1332, 1498
CspI	CGGWCCG	1 cut(s)	720
CviAII	CATG	9 cut(s)	13, 329, 629, 655, 946, 1034, 1148, 1717, 1833
CviQI	GTAC	3 cut(s)	29, 1332, 1498
DdeI	CTNAG	6 cut(s)	131, 274, 294, 932, 980, 1290
DinI	GGCGCC	1 cut(s)	373
DpnI	GATC	1 cut(s)	1924
DpnII	GATC	1 cut(s)	1922
DraI	TTTAAA	1 cut(s)	243
DriI	GACNNNNNGTC	1 cut(s)	1903
EaeI	YGGCCR	4 cut(s)	402, 843, 849, 1213
Eam1104I	CTCTTC	2 cut(s)	219, 491
Eam1105I	GACNNNNNGTC	1 cut(s)	1903
EarI	CTCTTC	2 cut(s)	219, 491
Eco130I	CCWWGG	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	77, 480
Eco47I	GGWCC	3 cut(s)	451, 634, 720
Eco91I	GGTNACC	1 cut(s)	1736
EcoNI	CCTNNNNNAGG	2 cut(s)	629, 1592
EcoO109I	RGGNCCY	3 cut(s)	73, 634, 1585
EcoO65I	GGTNACC	1 cut(s)	1736
EcoRI	GAATTC	2 cut(s)	898, 1242
EcoRII	CCWGG	6 cut(s)	342, 396, 831, 1327, 1373, 1916
EcoT14I	CCWWGG	1 cut(s)	328
EcoT22I	ATGCAT	1 cut(s)	1039
EcoT38I	GRGCYC	2 cut(s)	77, 480
EgeI	GGCGCC	1 cut(s)	373
EheI	GGCGCC	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	9 cut(s)	16, 332, 632, 658, 949, 1037, 1151, 1720, 1836
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	2 cut(s)	493, 620
FatI	CATG	9 cut(s)	12, 328, 628, 654, 945, 1033, 1147, 1716, 1832
FauI	CCCGC	3 cut(s)	446, 610, 620
FblI	GTMKAC	1 cut(s)	1127
Fnu4HI	GCNGC	4 cut(s)	405, 1310, 1393, 1494
FokI	GGATG	6 cut(s)	65, 467, 581, 1238, 1904, 1925
FriOI	GRGCYC	2 cut(s)	77, 480
Fsp4HI	GCNGC	4 cut(s)	405, 1310, 1393, 1494
FspBI	CTAG	4 cut(s)	1355, 1604, 1742, 1901
GlaI	GCGC	7 cut(s)	326, 373, 502, 579, 581, 616, 741
GluI	GCNGC	4 cut(s)	405, 1310, 1393, 1494
GsaI	CCCAGC	3 cut(s)	382, 386, 780
GsuI	CTGGAG	1 cut(s)	890
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	9 cut(s)	75, 337, 404, 845, 851, 1117, 1215, 1373, 1587
HapII	CCGG	7 cut(s)	432, 449, 718, 723, 1118, 1212, 1223
HgaI	GACGC	2 cut(s)	658, 716
HhaI	GCGC	7 cut(s)	327, 374, 503, 580, 582, 617, 742
Hin1I	GRCGYC	2 cut(s)	372, 669
Hin1II	CATG	9 cut(s)	16, 332, 632, 658, 949, 1037, 1151, 1720, 1836
Hin6I	GCGC	7 cut(s)	325, 372, 501, 578, 580, 615, 740
HinP1I	GCGC	7 cut(s)	325, 372, 501, 578, 580, 615, 740
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HindIII	AAGCTT	2 cut(s)	863, 977
HinfI	GANTC	8 cut(s)	298, 621, 680, 881, 886, 1072, 1094, 1904
HpaI	GTTAAC	1 cut(s)	234
HpaII	CCGG	7 cut(s)	432, 449, 718, 723, 1118, 1212, 1223
HphI	GGTGA	3 cut(s)	403, 1064, 1438
Hpy166II	GTNNAC	5 cut(s)	234, 283, 1128, 1443, 1500
Hpy188I	TCNGA	6 cut(s)	297, 475, 943, 1071, 1419, 1909
Hpy188III	TCNNGA	4 cut(s)	869, 1474, 1717, 1796
Hpy8I	GTNNAC	5 cut(s)	234, 283, 1128, 1443, 1500
Hpy99I	CGWCG	2 cut(s)	674, 1441
HpyCH4III	ACNGT	4 cut(s)	163, 421, 1642, 1695
HpyCH4IV	ACGT	3 cut(s)	236, 1439, 1445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	475, 1493, 1720, 1848
HpyF3I	CTNAG	6 cut(s)	131, 274, 294, 932, 980, 1290
HpySE526I	ACGT	3 cut(s)	236, 1439, 1445
Hsp92I	GRCGYC	2 cut(s)	372, 669
Hsp92II	CATG	9 cut(s)	16, 332, 632, 658, 949, 1037, 1151, 1720, 1836
HspAI	GCGC	7 cut(s)	325, 372, 501, 578, 580, 615, 740
KasI	GGCGCC	1 cut(s)	371
KpnI	GGTACC	1 cut(s)	1335
KspAI	GTTAAC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	1922
LmnI	GCTCC	1 cut(s)	1214
Lsp1109I	GCAGC	3 cut(s)	1321, 1379, 1480
LweI	GCATC	6 cut(s)	273, 1168, 1216, 1273, 1882, 1903
MabI	ACCWGGT	1 cut(s)	831
MaeI	CTAG	4 cut(s)	1355, 1604, 1742, 1901
MaeII	ACGT	3 cut(s)	236, 1439, 1445
MaeIII	GTNAC	6 cut(s)	248, 1511, 1546, 1651, 1662, 1736
MalI	GATC	1 cut(s)	1924
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	1 cut(s)	1922
MboII	GAAGA	6 cut(s)	206, 478, 529, 776, 1534, 1628
MfeI	CAATTG	2 cut(s)	641, 1926
MhlI	GDGCHC	4 cut(s)	77, 480, 551, 1155
MlsI	TGGCCA	1 cut(s)	845
MluI	ACGCGT	1 cut(s)	708
MluNI	TGGCCA	1 cut(s)	845
Mly113I	GGCGCC	1 cut(s)	372
MlyI	GAGTC	2 cut(s)	1088, 1913
Mox20I	TGGCCA	1 cut(s)	845
Mph1103I	ATGCAT	1 cut(s)	1039
MscI	TGGCCA	1 cut(s)	845
MslI	CAYNNNNRTG	2 cut(s)	1042, 1148
Msp20I	TGGCCA	1 cut(s)	845
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	7 cut(s)	432, 449, 718, 723, 1118, 1212, 1223
MspR9I	CCNGG	7 cut(s)	344, 398, 449, 833, 1329, 1375, 1918
MunI	CAATTG	2 cut(s)	641, 1926
Mva1269I	GAATGC	1 cut(s)	1029
MvaI	CCWGG	6 cut(s)	344, 398, 833, 1329, 1375, 1918
MvnI	CGCG	6 cut(s)	501, 580, 615, 617, 710, 740
MwoI	GCNNNNNNNGC	4 cut(s)	475, 1493, 1720, 1848
NarI	GGCGCC	1 cut(s)	372
NciI	CCSGG	1 cut(s)	449
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	1 cut(s)	1922
NlaIII	CATG	9 cut(s)	16, 332, 632, 658, 949, 1037, 1151, 1720, 1836
NlaIV	GGNNCC	9 cut(s)	74, 75, 373, 436, 453, 636, 894, 1210, 1333
NmeAIII	GCCGAG	2 cut(s)	554, 1773
NmuCI	GTSAC	2 cut(s)	1511, 1662
NsiI	ATGCAT	1 cut(s)	1039
PagI	TCATGA	1 cut(s)	1716
PauI	GCGCGC	1 cut(s)	578
PceI	AGGCCT	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	1442
PctI	GAATGC	1 cut(s)	1029
PfeI	GAWTC	6 cut(s)	298, 621, 680, 881, 886, 1072
PflFI	GACNNNGTC	1 cut(s)	668
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	4 cut(s)	406, 1311, 1394, 1495
PleI	GAGTC	2 cut(s)	1088, 1912
PluTI	GGCGCC	1 cut(s)	375
PpsI	GAGTC	2 cut(s)	1088, 1912
PpuMI	RGGWCCY	1 cut(s)	634
PsiI	TTATAA	1 cut(s)	1344
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	6 cut(s)	342, 396, 831, 1327, 1373, 1916
PspEI	GGTNACC	1 cut(s)	1736
PspFI	CCCAGC	3 cut(s)	378, 382, 776
PspGI	CCWGG	6 cut(s)	342, 396, 831, 1327, 1373, 1916
PspN4I	GGNNCC	9 cut(s)	74, 75, 373, 436, 453, 636, 894, 1210, 1333
PspOMI	GGGCCC	1 cut(s)	73
PspPI	GGNCC	7 cut(s)	73, 74, 451, 634, 720, 1115, 1585
PspPPI	RGGWCCY	1 cut(s)	634
PstNI	CAGNNNCTG	2 cut(s)	301, 1493
PsyI	GACNNNGTC	1 cut(s)	668
PteI	GCGCGC	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	30, 1333, 1499
RsaNI	GTAC	3 cut(s)	29, 1332, 1498
RseI	CAYNNNNRTG	2 cut(s)	1042, 1148
Rsr2I	CGGWCCG	1 cut(s)	720
RsrII	CGGWCCG	1 cut(s)	720
SatI	GCNGC	4 cut(s)	405, 1310, 1393, 1494
Sau3AI	GATC	1 cut(s)	1922
Sau96I	GGNCC	7 cut(s)	73, 74, 451, 634, 720, 1115, 1585
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	2 cut(s)	1088, 1913
ScrFI	CCNGG	7 cut(s)	344, 398, 449, 833, 1329, 1375, 1918
SduI	GDGCHC	4 cut(s)	77, 480, 551, 1155
SexAI	ACCWGGT	1 cut(s)	831
SfaNI	GCATC	6 cut(s)	273, 1168, 1216, 1273, 1882, 1903
SfcI	CTRYAG	1 cut(s)	1237
SfoI	GGCGCC	1 cut(s)	373
SinI	GGWCC	3 cut(s)	451, 634, 720
SmiMI	CAYNNNNRTG	2 cut(s)	1042, 1148
SmlI	CTYRAG	2 cut(s)	1592, 1846
SmoI	CTYRAG	2 cut(s)	1592, 1846
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	7 cut(s)	405, 439, 467, 499, 601, 613, 617
SspDI	GGCGCC	1 cut(s)	371
SspI	AATATT	2 cut(s)	1024, 1453
SspMI	CTAG	4 cut(s)	1355, 1604, 1742, 1901
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	7 cut(s)	342, 396, 447, 831, 1327, 1373, 1916
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	4 cut(s)	163, 421, 1642, 1695
TaiI	ACGT	3 cut(s)	239, 1442, 1448
TaqI	TCGA	7 cut(s)	531, 678, 732, 884, 902, 1273, 1436
TatI	WGTACW	1 cut(s)	28
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	6 cut(s)	298, 621, 680, 881, 886, 1072
TseFI	GTSAC	2 cut(s)	1511, 1662
TseI	GCWGC	3 cut(s)	1309, 1392, 1493
Tsp45I	GTSAC	2 cut(s)	1511, 1662
TspDTI	ATGAA	5 cut(s)	671, 1022, 1103, 1136, 1733
TspGWI	ACGGA	2 cut(s)	65, 1721
Tth111I	GACNNNGTC	1 cut(s)	668
VpaK11BI	GGWCC	3 cut(s)	451, 634, 720
XagI	CCTNNNNNAGG	2 cut(s)	629, 1592
XapI	RAATTY	3 cut(s)	747, 898, 1242
XmiI	GTMKAC	1 cut(s)	1127
XspI	CTAG	4 cut(s)	1355, 1604, 1742, 1901
ZrmI	AGTACT	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.