Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

12915805 .. 12920658

Gene Structure 4854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3444 bp

ATGATCAGTACCTATTTACCGATTGTCCACCAGAACTGTCGCTATCGTGGTAGCAACAGTTTCATGTACGAATCGCTAGCTTTGTACCGAACCCCTATTTTCGATTTTTTCTTTTTAAACAACAAACTATCGAACTCATATTCTTCAAAATATATTTTTTCATGCAAATTCTATTATCGTACATATTTAAACACTTCAGTACTTAGCTACCGATTGTCCACCAAAACTGTCGCTAGAATGTTAGCAACATTTTTGTTTTTTGCTTATATTTGTTTTAGTTCTCTTACCATAACCACAGACTATCGAACTCATATTCTTGAAAATATATTTTTTCATACAAAATCTATCATCAAAAGGATACGATCAGTACCTAACTACCGATTGCCCACCAGAACTGTTGCTAGCGTGTTAGCAACCTTTTTGTTTTTTGCTTATATTTTTCTTAGTTCTCTTAACATAACAACAAACTATCGAACTCATATTCTTCAAACTATATTTTTTCAAGCAAAATCTATTATCGAACAGAAAAGGATACGATCACAACAGTTTCAAGAAAGAATCGCTAGGTTCGTACCGAACCCCTCTTTTCAATGTTTTCTTTTTAGCTTTTTAGTTTTTGTTTTTTGCTTATATTTATTCTTCAAAATATATTTTTTCATACAAATCTATCATCGTACATATTTAAACACTTGTAATCAACGATTCCAAATAAATAAACGAAACAGAAAAGGATATGATCAGTACCTACCTATCGATTGTCCACCAGAACTCTTCGTACCGAACCCCTCTTTTCGATTTTTTCTTTTTAGCTTTTTAGTTATTGTTTTTTACTTATGTTTATTCTTCAAAATATATTTTTTCATGCAAAATCTATTATCGACACAGAAAAGGGTACGATCAGTACTGAGCTACCGATTGTCCACCAAAACTGTCGCTAGAATGTTAGCAACATTTTTGTTTTTTGCTTATATTCGTTTTAGTTCTCTTACCATAACAATAGACTATCGAACTCATATTCTTCAAAATATATTTTTTCATGCAAAATCTATTATCAAAAGGGTACGATCAGTACTTAGCTACCGATTGTCCACCAGAACTGTCGCTAGAATGTTAGCAATAGTCATGGGAACGAAACACTCGCTTCGTACCAAACCCCTCTTTTTCAACAACAAACTATCGAACTCATATTCTTCAAAATATATTTTTTTTTTCATGCAAAATCTATTATCAAATGAACAGAAAAGGATACGATCAGTACTTTGCAGCCGATTGTCCACAAAAACTGTCGCTAGTGTGTTAGCAACAGATCTCCCCCTTTCAAAACCGAACATGAAAGTTTCCTCGCATCTAGCTCTAGTAGTTACACCAAATAAAGATATATCGTTTTTGTGTTTAAAAGTAAGAATGAAAGTTTACTTGTTTAGAATAGAGAAAGTCGGAAATAGGGAAGAGAAAGAAGGGATAATTAGTGTAACATATCCATTCCATATACATTCCATTGAAGTAAACTCCATATCGTGCAATTTGCAATCATCAACTAACTACACGTATGTACTAATTAAATTTAGATGTTTATTGGAGGAACCAAACCTACTAAGACATATGAGTTTACAGCTCAGCACACAATCAACCCTTTACGTACCATTGAAGCATTTCACTAAACCCTTGACATGTGGTCCTAACTCATCTTCGTACCGTTCCTCACCGTTGGAGTCAGCTTTACTTACAAAGAATGAGTATCATTCTTATTCACGTGCTAATACTCACAAGATTGATAAACCGCATAAGATTGAATATTTTCTCCATTGGGATGTTCCTTGTTTGGGTTGGGTTAAGCTTAACGTTGACGGTTGCAAGAAGGGAAATAATAATTCTATTGGAGCATGTGGTGTTTTAAGATATTTTGATGGTAAATGTATTTCTAGGTTTTGCGCCAATTTGGGCACTACTGGTGGAATCAGACTCTACAGTTATAGTTCAATTTGTGTTGCAGTTGCTGGCAATAATCATCCTTTTGGTCCCCTTATTTTGGCCTATCGAGAATTGCGTTCAAGACCTTGGCAATGCAAACTTCGACATATCTACAAAGAAAAGAACTTTGTTGCAGATAGTTTAGCAACTTATAGTCTTGATTTAGATTTAGGTAATTTTTATTTTGATACTCCTCCTTCTAGTTCACCCTGTTTTTCAAACTCCGGCACCCGCAACCTCCCGGACCCCACACTCTCCCGCTCTACGAGCCCCTCCGCGCCCAGTCCCTCCACCCCTCCAAAAAACTCGACTTCTTCAAATGGTGCTCTCTCACGCATAACATCAAACACTCGGTGCGCACCTACTCCCACATCCTCCGCACCGCCTCCCGCTCTGGATTCCTCCACGAGGTCCCTCAATTGCTTCACTCACGGCGTCGTGGTCGATTCCCAGACCTTCAAAGCCCTGCTCGACGCGTTTATCCGGTCCAGTAAGTTCGATTATGCGCTTGAAATTTTGGATTTTATGGAAGATGTTGGTGCTGGGTTGAACACCGATATGTATAACTCGGTTCTTGTTGCTCTGTTTAGGAAAAACCAGGCGGGTTTGGCCATGGCCATTTTGCTTAAGCTTCTGGAGGGAGTGGATTCTTCCCAGATGAAAGACTCTAACTTGGATTGCGTCCGGCCAGATTTGTCCACATATAATAGCCTCATTCATGTGCTCTGCTTGGTGGGGAAGTTGAATGATGCACTTACTGTATGGGAGGAATTGAAGGGCTCCGGCCACGAGCTGGACGCAATTACCTATGGAATTCTTGTTCAGGGGTGTTGTAAATGTTATCGAATAGACGATGCCACTAAGATTTTTAGTGAAATGCAGCTCAATGGATATATCCCTGATACCATTGTTTATAATTCTCTGCTAGATGGGCTATTCAAGGCCAGGAAGGTTAATGATGGCTGTCAGTTATTTGAGAATATGGTTCAGAATGGGGGTCAGTTTGTGGATGGTGTAACATATAGCATTGTGGTTTTGCAACTTTGTAAGGAGGGTTTGCTTGAGGACGCACTAGGATTGGTGGAAGAAATGGAAAGGAGAGGCTTTACTGTTAATTTAGTTACTATTTCGTCACTTGTGATTGGGCTGTATAAAGGTCGGTGGGATTGGACGGACAAGCTCATGAAGCACATTAGAGATGGTAACCTAGTGGCAAGTGTTCTTAAATGGAAGGTTGATATGGAGGCTTCGCTGAAAAATCCACAGAGAAATAGCAAGGATTCTACATCATTGTTCCCAAGTAAAGGCGACTTGAGCAAGATTATGAGTTTAATAAAGTCTGCTGAATCAACTATGGATGCAGGCCTAGATTCAGAGGCTGCGAGGGTTAAGGAAAATAATAAGAATTTGTCCACCGATACTGATCAGTGCTCATCATCTGCACATATGGATCAATTGGCTAATCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1148

Amino Acids

130.96

Weight (kDa)

9.47

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	884 - 915	1.1e-07	PPR repeat
PPR_2	PF13041	887 - 936	9.2e-13	PPR repeat family
PPR_1	PF12854	919 - 951	2.8e-08	PPR repeat
PPR_2	PF13041	930 - 968	3.3e-06	PPR repeat family
PPR_1	PF12854	954 - 986	2.4e-06	PPR repeat
PPR_2	PF13041	957 - 1007	1.5e-09	PPR repeat family
PPR_2	PF13041	996 - 1042	9.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2886
Acc16I	TGCGCA	1 cut(s)	2329
AccB1I	GGYRCC	1 cut(s)	2198
AccB7I	CCANNNNNTGG	1 cut(s)	2764
AccBSI	CCGCTC	2 cut(s)	2232, 2363
AccII	CGCG	2 cut(s)	2249, 2447
AciI	CCGC	8 cut(s)	1781, 2203, 2230, 2247, 2349, 2354, 2361, 2573
AclI	AACGTT	1 cut(s)	1842
AclWI	GGATC	1 cut(s)	3429
AcoI	YGGCCR	4 cut(s)	2580, 2586, 2657, 2755
AcsI	RAATTY	5 cut(s)	167, 1562, 2484, 2784, 3376
AcuI	CTGAAG	1 cut(s)	180
AcvI	CACGTG	1 cut(s)	1754
AcyI	GRCGYC	1 cut(s)	2406
AdeI	CACNNNGTG	1 cut(s)	2325
AfiI	CCNNNNNNNGG	5 cut(s)	1823, 2029, 2379, 2764, 3275
AflII	CTTAAG	1 cut(s)	2597
AflIII	ACRYGT	3 cut(s)	1545, 1670, 2445
AhdI	GACNNNNNGTC	1 cut(s)	1674
AjnI	CCWGG	2 cut(s)	2568, 2915
AloI	GAACNNNNNNTCC	2 cut(s)	2775, 2807
Alw21I	GWGCWC	3 cut(s)	2299, 2697, 3404
AlwI	GGATC	1 cut(s)	3429
AlwNI	CAGNNNCTG	2 cut(s)	1997, 3350
AoxI	GGCC	7 cut(s)	2031, 2580, 2586, 2657, 2755, 2913, 3334
ApeKI	GCWGC	3 cut(s)	1263, 2851, 3350
ApoI	RAATTY	5 cut(s)	167, 1562, 2484, 2784, 3376
Asp700I	GAANNNNTTC	2 cut(s)	1652, 1797
AspLEI	GCGC	4 cut(s)	1934, 2251, 2330, 2479
AspS9I	GGNCC	5 cut(s)	1676, 2018, 2215, 2382, 2457
AsuC2I	CCSGG	1 cut(s)	2213
AsuHPI	GGTGA	2 cut(s)	1695, 2169
AsuNHI	GCTAGC	2 cut(s)	76, 401
AvaII	GGWCC	5 cut(s)	1676, 2018, 2215, 2382, 2457
BaeGI	GKGCMC	1 cut(s)	1946
BaeI	ACNNNNGTAYC	2 cut(s)	2865, 2898
BalI	TGGCCA	2 cut(s)	2582, 2588
BanI	GGYRCC	1 cut(s)	2198
BanII	GRGCYC	2 cut(s)	2243, 2753
BauI	CACGAG	2 cut(s)	2377, 2759
BbrPI	CACGTG	1 cut(s)	1754
Bbv12I	GWGCWC	3 cut(s)	2299, 2697, 3404
BbvI	GCAGC	3 cut(s)	1275, 2863, 3337
BccI	CCATC	5 cut(s)	1901, 2894, 2924, 2975, 3164
BceAI	ACGGC	1 cut(s)	2419
BciT130I	CCWGG	2 cut(s)	2570, 2917
BciVI	GTATCC	3 cut(s)	351, 525, 1239
BclI	TGATCA	3 cut(s)	3, 736, 3394
BcnI	CCSGG	1 cut(s)	2213
BfmI	CTRYAG	1 cut(s)	1966
BfrI	CTTAAG	1 cut(s)	2597
BfuI	GTATCC	3 cut(s)	351, 525, 1239
BglII	AGATCT	1 cut(s)	1306
BisI	GCNGC	3 cut(s)	1264, 2852, 3351
BlpI	GCTNAGC	1 cut(s)	1616
BlsI	GCNGC	3 cut(s)	1265, 2853, 3352
BmcAI	AGTACT	4 cut(s)	201, 903, 1071, 1257
Bme1390I	CCNGG	3 cut(s)	2213, 2570, 2917
Bme18I	GGWCC	5 cut(s)	1676, 2018, 2215, 2382, 2457
BmeRI	GACNNNNNGTC	1 cut(s)	1674
BmgT120I	GGNCC	5 cut(s)	1676, 2018, 2215, 2382, 2457
BmiI	GGNNCC	6 cut(s)	1584, 2020, 2200, 2217, 2384, 2752
BmrFI	CCNGG	3 cut(s)	2213, 2570, 2917
BmrI	ACTGGG	1 cut(s)	2247
BmsI	GCATC	4 cut(s)	1354, 2710, 2815, 3319
BmtI	GCTAGC	2 cut(s)	80, 405
BmuI	ACTGGG	1 cut(s)	2247
BpmI	CTGGAG	1 cut(s)	2627
Bpu1102I	GCTNAGC	1 cut(s)	1616
BpuEI	CTTGAG	2 cut(s)	3053, 3304
BpuMI	CCSGG	1 cut(s)	2213
Bsa29I	ATCGAT	1 cut(s)	753
BsaAI	YACGTR	3 cut(s)	1548, 1639, 1754
BsaBI	GATNNNNATC	1 cut(s)	3393
BsaHI	GRCGYC	1 cut(s)	2406
BsaJI	CCNNGG	2 cut(s)	2057, 2583
BsaWI	WCCGGW	1 cut(s)	2454
Bsc4I	CCNNNNNNNGG	5 cut(s)	1823, 2029, 2379, 2764, 3275
Bse1I	ACTGG	3 cut(s)	1954, 2253, 2460
Bse3DI	GCAATG	1 cut(s)	2069
Bse8I	GATNNNNATC	1 cut(s)	3393
BseBI	CCWGG	2 cut(s)	2570, 2917
BseCI	ATCGAT	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	2057, 2583
BseGI	GGATG	5 cut(s)	1816, 2008, 2342, 2986, 3334
BseJI	GATNNNNATC	1 cut(s)	3393
BseLI	CCNNNNNNNGG	5 cut(s)	1823, 2029, 2379, 2764, 3275
BseMI	GCAATG	1 cut(s)	2069
BseMII	CTCAG	2 cut(s)	896, 1630
BseNI	ACTGG	3 cut(s)	1954, 2253, 2460
BseRI	GAGGAG	1 cut(s)	2154
BseSI	GKGCMC	1 cut(s)	1946
BseXI	GCAGC	3 cut(s)	1275, 2863, 3337
BseYI	CCCAGC	1 cut(s)	2513
BsgI	GTGCAG	1 cut(s)	3396
Bsh1236I	CGCG	2 cut(s)	2249, 2447
BshFI	GGCC	7 cut(s)	2033, 2582, 2588, 2659, 2757, 2915, 3336
BshNI	GGYRCC	1 cut(s)	2198
BshVI	ATCGAT	1 cut(s)	753
BsiHKAI	GWGCWC	3 cut(s)	2299, 2697, 3404
BsiSI	CCGG	5 cut(s)	2196, 2213, 2455, 2656, 2754
BslFI	GGGAC	3 cut(s)	2004, 2241, 2368
BslI	CCNNNNNNNGG	5 cut(s)	1823, 2029, 2379, 2764, 3275
BsmFI	GGGAC	3 cut(s)	2004, 2241, 2368
BsnI	GGCC	7 cut(s)	2033, 2582, 2588, 2659, 2757, 2915, 3336
Bsp1286I	GDGCHC	6 cut(s)	1946, 2243, 2299, 2697, 2753, 3404
Bsp1720I	GCTNAGC	1 cut(s)	1616
Bsp19I	CCATGG	1 cut(s)	2583
BspACI	CCGC	8 cut(s)	1781, 2203, 2230, 2247, 2349, 2354, 2361, 2573
BspANI	GGCC	7 cut(s)	2033, 2582, 2588, 2659, 2757, 2915, 3336
BspCNI	CTCAG	2 cut(s)	897, 1629
BspDI	ATCGAT	1 cut(s)	753
BspFNI	CGCG	2 cut(s)	2249, 2447
BspHI	TCATGA	1 cut(s)	3153
BspLI	GGNNCC	6 cut(s)	1584, 2020, 2200, 2217, 2384, 2752
BspOI	GCTAGC	2 cut(s)	80, 405
BspPI	GGATC	1 cut(s)	3429
BspT107I	GGYRCC	1 cut(s)	2198
BspTI	CTTAAG	1 cut(s)	2597
BsrBI	CCGCTC	2 cut(s)	2232, 2363
BsrDI	GCAATG	1 cut(s)	2069
BsrI	ACTGG	3 cut(s)	1954, 2253, 2460
BssECI	CCNNGG	2 cut(s)	2057, 2583
BssNI	GRCGYC	1 cut(s)	2406
BssSI	CACGAG	2 cut(s)	2377, 2759
BssT1I	CCWWGG	2 cut(s)	2057, 2583
Bst2BI	CACGAG	2 cut(s)	2377, 2759
Bst2UI	CCWGG	2 cut(s)	2570, 2917
Bst6I	CTCTTC	2 cut(s)	776, 1443
BstACI	GRCGYC	1 cut(s)	2406
BstAFI	CTTAAG	1 cut(s)	2597
BstBAI	YACGTR	3 cut(s)	1548, 1639, 1754
BstC8I	GCNNGC	4 cut(s)	78, 403, 1999, 3334
BstDEI	CTNAG	7 cut(s)	203, 443, 905, 1073, 1595, 1616, 2832
BstDSI	CCRYGG	1 cut(s)	2583
BstEII	GGTNACC	1 cut(s)	3173
BstENI	CCTNNNNNAGG	1 cut(s)	2377
BstF5I	GGATG	5 cut(s)	1816, 2008, 2342, 2986, 3334
BstFNI	CGCG	2 cut(s)	2249, 2447
BstHHI	GCGC	4 cut(s)	1934, 2251, 2330, 2479
BstMWI	GCNNNNNNNGC	5 cut(s)	2238, 2579, 2902, 3157, 3285
BstNI	CCWGG	2 cut(s)	2570, 2917
BstNSI	RCATGY	2 cut(s)	1674, 1887
BstPI	GGTNACC	1 cut(s)	3173
BstSCI	CCNGG	3 cut(s)	2211, 2568, 2915
BstSFI	CTRYAG	1 cut(s)	1966
BstSLI	GKGCMC	1 cut(s)	1946
BstSNI	TACGTA	1 cut(s)	1639
BstUI	CGCG	2 cut(s)	2249, 2447
BstV1I	GCAGC	3 cut(s)	1275, 2863, 3337
BstX2I	RGATCY	1 cut(s)	1306
BstYI	RGATCY	1 cut(s)	1306
Bsu15I	ATCGAT	1 cut(s)	753
BsuI	GTATCC	3 cut(s)	351, 525, 1239
BsuRI	GGCC	7 cut(s)	2033, 2582, 2588, 2659, 2757, 2915, 3336
BsuTUI	ATCGAT	1 cut(s)	753
BtgI	CCRYGG	1 cut(s)	2583
BtsCI	GGATG	5 cut(s)	1816, 2008, 2342, 2986, 3334
BtsIMutI	CAGTG	1 cut(s)	3404
Cac8I	GCNNGC	4 cut(s)	78, 403, 1999, 3334
CaiI	CAGNNNCTG	2 cut(s)	1997, 3350
CciI	TCATGA	1 cut(s)	3153
CfoI	GCGC	4 cut(s)	1934, 2251, 2330, 2479
Cfr13I	GGNCC	5 cut(s)	1676, 2018, 2215, 2382, 2457
ClaI	ATCGAT	1 cut(s)	753
CseI	GACGC	5 cut(s)	2395, 2453, 2641, 2777, 3047
DdeI	CTNAG	7 cut(s)	203, 443, 905, 1073, 1595, 1616, 2832
DraI	TTTAAA	4 cut(s)	117, 189, 684, 1395
DraIII	CACNNNGTG	1 cut(s)	2325
DriI	GACNNNNNGTC	1 cut(s)	1674
EaeI	YGGCCR	4 cut(s)	2580, 2586, 2657, 2755
Eam1104I	CTCTTC	2 cut(s)	776, 1443
Eam1105I	GACNNNNNGTC	1 cut(s)	1674
EarI	CTCTTC	2 cut(s)	776, 1443
Eco105I	TACGTA	1 cut(s)	1639
Eco130I	CCWWGG	2 cut(s)	2057, 2583
Eco147I	AGGCCT	1 cut(s)	3336
Eco24I	GRGCYC	2 cut(s)	2243, 2753
Eco47I	GGWCC	5 cut(s)	1676, 2018, 2215, 2382, 2457
Eco57I	CTGAAG	1 cut(s)	180
Eco72I	CACGTG	1 cut(s)	1754
Eco91I	GGTNACC	1 cut(s)	3173
EcoNI	CCTNNNNNAGG	1 cut(s)	2377
EcoO109I	RGGNCCY	1 cut(s)	2382
EcoO65I	GGTNACC	1 cut(s)	3173
EcoRI	GAATTC	1 cut(s)	2784
EcoRII	CCWGG	2 cut(s)	2568, 2915
EcoT14I	CCWWGG	2 cut(s)	2057, 2583
EcoT38I	GRGCYC	2 cut(s)	2243, 2753
ErhI	CCWWGG	2 cut(s)	2057, 2583
FaqI	GGGAC	3 cut(s)	2004, 2241, 2368
FauI	CCCGC	4 cut(s)	2210, 2237, 2368, 2566
FauNDI	CATATG	2 cut(s)	1602, 3417
FbaI	TGATCA	3 cut(s)	3, 736, 3394
Fnu4HI	GCNGC	3 cut(s)	1264, 2852, 3351
FokI	GGATG	5 cut(s)	1823, 1995, 2329, 2993, 3341
FriOI	GRGCYC	2 cut(s)	2243, 2753
Fsp4HI	GCNGC	3 cut(s)	1264, 2852, 3351
FspAI	RTGCGCAY	1 cut(s)	2329
FspI	TGCGCA	1 cut(s)	2329
GlaI	GCGC	4 cut(s)	1933, 2250, 2329, 2478
GluI	GCNGC	3 cut(s)	1264, 2852, 3351
GsaI	CCCAGC	1 cut(s)	2517
GsuI	CTGGAG	1 cut(s)	2627
HaeIII	GGCC	7 cut(s)	2033, 2582, 2588, 2659, 2757, 2915, 3336
HapII	CCGG	5 cut(s)	2196, 2213, 2455, 2656, 2754
HgaI	GACGC	5 cut(s)	2395, 2453, 2641, 2777, 3047
HhaI	GCGC	4 cut(s)	1934, 2251, 2330, 2479
Hin1I	GRCGYC	1 cut(s)	2406
Hin6I	GCGC	4 cut(s)	1932, 2249, 2328, 2477
HinP1I	GCGC	4 cut(s)	1932, 2249, 2328, 2477
HincII	GTYRAC	1 cut(s)	1846
HindII	GTYRAC	1 cut(s)	1846
HindIII	AAGCTT	2 cut(s)	1835, 2600
HpaII	CCGG	5 cut(s)	2196, 2213, 2455, 2656, 2754
HphI	GGTGA	2 cut(s)	1695, 2169
Hpy188I	TCNGA	4 cut(s)	1439, 1961, 2961, 3346
Hpy188III	TCNNGA	8 cut(s)	317, 551, 2039, 2052, 2129, 2366, 2606, 3154
Hpy99I	CGWCG	2 cut(s)	2411, 2447
HpyAV	CCTTC	7 cut(s)	1451, 1852, 2178, 2437, 2740, 2914, 3196
HpyCH4IV	ACGT	4 cut(s)	1547, 1638, 1753, 1842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	2238, 2579, 2902, 3157, 3285
HpyF3I	CTNAG	7 cut(s)	203, 443, 905, 1073, 1595, 1616, 2832
HpySE526I	ACGT	4 cut(s)	1547, 1638, 1753, 1842
Hsp92I	GRCGYC	1 cut(s)	2406
HspAI	GCGC	4 cut(s)	1932, 2249, 2328, 2477
Ksp22I	TGATCA	3 cut(s)	3, 736, 3394
LmnI	GCTCC	2 cut(s)	1880, 2756
Lsp1109I	GCAGC	3 cut(s)	1275, 2863, 3337
LweI	GCATC	4 cut(s)	1354, 2710, 2815, 3319
MaeII	ACGT	4 cut(s)	1547, 1638, 1753, 1842
MaeIII	GTNAC	6 cut(s)	1360, 1471, 2986, 3091, 3102, 3173
MbiI	CCGCTC	2 cut(s)	2232, 2363
MfeI	CAATTG	2 cut(s)	2389, 3425
MflI	RGATCY	1 cut(s)	1306
MhlI	GDGCHC	6 cut(s)	1946, 2243, 2299, 2697, 2753, 3404
MlsI	TGGCCA	2 cut(s)	2582, 2588
MluI	ACGCGT	1 cut(s)	2445
MluNI	TGGCCA	2 cut(s)	2582, 2588
MlyI	GAGTC	3 cut(s)	1721, 1956, 2630
MmeI	TCCRAC	2 cut(s)	1417, 1689
Mox20I	TGGCCA	2 cut(s)	2582, 2588
MroXI	GAANNNNTTC	2 cut(s)	1652, 1797
MscI	TGGCCA	2 cut(s)	2582, 2588
MslI	CAYNNNNRTG	3 cut(s)	1809, 2528, 2690
Msp20I	TGGCCA	2 cut(s)	2582, 2588
MspCI	CTTAAG	1 cut(s)	2597
MspI	CCGG	5 cut(s)	2196, 2213, 2455, 2656, 2754
MspR9I	CCNGG	3 cut(s)	2213, 2570, 2917
MunI	CAATTG	2 cut(s)	2389, 3425
MvaI	CCWGG	2 cut(s)	2570, 2917
MvnI	CGCG	2 cut(s)	2249, 2447
MwoI	GCNNNNNNNGC	5 cut(s)	2238, 2579, 2902, 3157, 3285
NciI	CCSGG	1 cut(s)	2213
NcoI	CCATGG	1 cut(s)	2583
NdeI	CATATG	2 cut(s)	1602, 3417
NheI	GCTAGC	2 cut(s)	76, 401
NlaIV	GGNNCC	6 cut(s)	1584, 2020, 2200, 2217, 2384, 2752
NmuCI	GTSAC	1 cut(s)	3102
NsbI	TGCGCA	1 cut(s)	2329
NspI	RCATGY	2 cut(s)	1674, 1887
PagI	TCATGA	1 cut(s)	3153
PceI	AGGCCT	1 cut(s)	3336
PciI	ACATGT	1 cut(s)	1670
PcsI	WCGNNNNNNNCGW	2 cut(s)	567, 2044
PdmI	GAANNNNTTC	2 cut(s)	1652, 1797
PflMI	CCANNNNNTGG	1 cut(s)	2764
PfoI	TCCNGGA	1 cut(s)	2211
PkrI	GCNGC	3 cut(s)	1265, 2853, 3352
PleI	GAGTC	3 cut(s)	1720, 1956, 2630
PmaCI	CACGTG	1 cut(s)	1754
PmlI	CACGTG	1 cut(s)	1754
PpsI	GAGTC	3 cut(s)	1720, 1956, 2630
Ppu21I	YACGTR	3 cut(s)	1548, 1639, 1754
PpuMI	RGGWCCY	1 cut(s)	2382
PscI	ACATGT	1 cut(s)	1670
PsiI	TTATAA	1 cut(s)	2886
Psp1406I	AACGTT	1 cut(s)	1842
Psp5II	RGGWCCY	1 cut(s)	2382
Psp6I	CCWGG	2 cut(s)	2568, 2915
PspCI	CACGTG	1 cut(s)	1754
PspEI	GGTNACC	1 cut(s)	3173
PspFI	CCCAGC	1 cut(s)	2513
PspGI	CCWGG	2 cut(s)	2568, 2915
PspN4I	GGNNCC	6 cut(s)	1584, 2020, 2200, 2217, 2384, 2752
PspPI	GGNCC	5 cut(s)	1676, 2018, 2215, 2382, 2457
PspPPI	RGGWCCY	1 cut(s)	2382
PsrI	GAACNNNNNNTAC	4 cut(s)	759, 791, 1575, 1607
PstNI	CAGNNNCTG	2 cut(s)	1997, 3350
PsuI	RGATCY	1 cut(s)	1306
RseI	CAYNNNNRTG	3 cut(s)	1809, 2528, 2690
SatI	GCNGC	3 cut(s)	1264, 2852, 3351
Sau96I	GGNCC	5 cut(s)	1676, 2018, 2215, 2382, 2457
ScaI	AGTACT	4 cut(s)	201, 903, 1071, 1257
SchI	GAGTC	3 cut(s)	1721, 1956, 2630
ScrFI	CCNGG	3 cut(s)	2213, 2570, 2917
SduI	GDGCHC	6 cut(s)	1946, 2243, 2299, 2697, 2753, 3404
SfaNI	GCATC	4 cut(s)	1354, 2710, 2815, 3319
SfcI	CTRYAG	1 cut(s)	1966
SinI	GGWCC	5 cut(s)	1676, 2018, 2215, 2382, 2457
SmiMI	CAYNNNNRTG	3 cut(s)	1809, 2528, 2690
SmlI	CTYRAG	3 cut(s)	2597, 3032, 3283
SmoI	CTYRAG	3 cut(s)	2597, 3032, 3283
SnaBI	TACGTA	1 cut(s)	1639
SseBI	AGGCCT	1 cut(s)	3336
SsiI	CCGC	8 cut(s)	1781, 2203, 2230, 2247, 2349, 2354, 2361, 2573
SspI	AATATT	1 cut(s)	1796
StuI	AGGCCT	1 cut(s)	3336
StyD4I	CCNGG	3 cut(s)	2211, 2568, 2915
StyI	CCWWGG	2 cut(s)	2057, 2583
TaiI	ACGT	4 cut(s)	1550, 1641, 1756, 1845
TatI	WGTACW	5 cut(s)	199, 901, 1069, 1255, 1552
TscAI	CASTG	1 cut(s)	3404
TseFI	GTSAC	1 cut(s)	3102
TseI	GCWGC	3 cut(s)	1263, 2851, 3350
Tsp45I	GTSAC	1 cut(s)	3102
TspGWI	ACGGA	1 cut(s)	3158
TspRI	CASTG	1 cut(s)	3404
Van91I	CCANNNNNTGG	1 cut(s)	2764
Vha464I	CTTAAG	1 cut(s)	2597
VpaK11BI	GGWCC	5 cut(s)	1676, 2018, 2215, 2382, 2457
XagI	CCTNNNNNAGG	1 cut(s)	2377
XapI	RAATTY	5 cut(s)	167, 1562, 2484, 2784, 3376
XceI	RCATGY	2 cut(s)	1674, 1887
XmnI	GAANNNNTTC	2 cut(s)	1652, 1797
ZrmI	AGTACT	4 cut(s)	201, 903, 1071, 1257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.