Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003384

Physical Location & Seq

Genomic Coordinates Forward (+)

12996864 .. 12998992

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGAAGGAGGATGGCGTCGTGGTCGATTCCCAGACCTTCAAAGCCCTGCTCGACGAGTTTATCCGGTCCGGTAAATTCGATTACGCGCTTGAAATTTCGGATATTATGGAAGATGTTGGTGCTGGGTTGAACACCGATATGTGGGTTTGGCCATGGCCATTTAGCTGGAGGGAGGGGATTCTTCCCAGGTGCCAAATTCGATTGCCTGCAATGAGTGACTGGTTGCTCTTAGAAAATCTGACATTGAGGGGTTTGAGATGGATACTTGGGGGTATAATATTTGCATTCATGCATTTGGGTGATTTCGGTACTAGTCTGAGTCTGTTCAGAGAGATGAAAGACTCTAACTTGGATTACGTCGTGCCGGATTTGTCTACATATAATAGCCTCATTCATGTGCTCTGTTTGGTGGGGAAGTTGAATGATGCACTTACTGTATGGGAGGAATTGAAGGGCTCCGGCCATGAGCCCAACACAATTACCTATAGAATTCTTATTCAGGTGTGTTGTAAGTGTTATCGAATAGACGATGCCACTAAGATTTTTAGTGAAATGCAGCTCAATGGATATATCCCGGATACCATTGTTTTTAATTCTCTACTAGATGGGTTATTCAAGGCTAGGAAGTTTAATGATGGCTGCCAGTTATTTGAGAAAATGGTTCAGAATGGGGTGAGAGCCTCGACGTGGACGTATAATATTCTCATGGATGGTTTGTTCAGGAATGGAAGGGCAGATGCTGCGTACACACTATTTTGTGACTTAAAGAAGAAGGGTCAGTTTGTTGATGGTGTAACATATAGCATTGTGGTTTTGCAACTTTGTAAGGACGGTCTGCTTGAGGAAGCGCTAGGATTGGTGGAAGAAATGGAAAGGAGAGGCTTTACTGTTGATTTAATTACTGTATCGTCACTTGTGATTGGGTTGTATAAAGGTTGGTGGGATTGGACGGACAAGCTCATGAAGCACATTAGAGATGGTAACCTAGTGCCGAGTGTTCTTAAATGGAAGGTTGATATGGAGGCTTCACTGAAAAATCCGCAGAGAAATAGAAAGGATTATACACCATTAAAGTCTGCTGAATCAACAATGGATACAGACCTAGATTCAGAGGCTGCCAGGGCTAAAGAAGATGATAAGAATTTGTCCACCGATGAGGATCAGTGGTCATCATCTCCACATATGGATGAATTGGCTCATCAACTTAAGGCTGCCGATCACTCCTCGCAGCTGTTTTCATTGTCCAGGGGGCTAAGAGTTCAAGCGAAAGGGGAAAGCACTTTTGATATTGACATGGTTAATACTTTTTTGTCCTTATTCTTGGCCAAGGGAAAGCTGAGCATAGCATGCAAATTTTTTGAGATTTTCAGTGACCTTGGTGAAAACCCTGTGAGTTATTCCATGATGCGTTCGTTTGTCAAGAAGGGCTACTTCAATGAGGCATGGGGTGTACTCAATGAAATGGGAGAAAAGGTTTGCCCCACAGACGTAGCTACATACAATGTGATAATTCAAGGCTTGGGGAAGATGGGTAGAGCGGATCTGGTGAGTTCTGTCCTGGATAAGCTAATTAAGCAGGGTGGTTATCTTGACGTGGTTATGTACAACACCTTGATTAATGCACTAGGAAAGGCTAGCAGGATTGATGAAGTAAACAAGCTCTTTGAGCAGATGAAGAGTAGTGGAATAAATCCTGATGTTGTCACTTTTAATACACTTATTGACGTTCATAGCAAAGCAGGTGTTGGAAATTCAAATCAAAACAAGTTGCTATTGTTGAAAATCAATGTCAAAGTTAGGCATGGAAAGTTAGGCAATGTGTTTTGTGTGGTAATAAATAATCTTAGTTTAATCATTTGGTTTGCTATAAATACCCAAGCTCTCAAGCATTGTAAATCATCCCATCCAAATCCCACTTCTAATTGTGAAGAAGCTTGTAAGCTTTCTTATTCCAACAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

655

Amino Acids

73.68

Weight (kDa)

5.78

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	100 - 260	5.3e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	107 - 170	2.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	120 - 150	1e-07	PPR repeat
PPR_2	PF13041	122 - 171	2.1e-14	PPR repeat family
PPR_1	PF12854	154 - 186	4.8e-09	PPR repeat
PPR_3	PF13812	180 - 237	7.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	189 - 221	9.1e-06	PPR repeat
PPR_2	PF13041	192 - 240	2e-13	PPR repeat family
PPR_1	PF12854	224 - 253	9.1e-06	PPR repeat
PPR_2	PF13041	229 - 276	6.5e-12	PPR repeat family
PPR_1	PF12854	259 - 291	3.1e-06	PPR repeat
PPR	PF01535	265 - 295	5.4e-06	PPR repeat
PPR_2	PF13041	467 - 509	1.7e-09	PPR repeat family
PPR_3	PF13812	518 - 577	2.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	530 - 559	1.5e-06	PPR repeat
PPR_2	PF13041	531 - 577	8.4e-16	PPR repeat family
PPR	PF01535	533 - 563	7.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01570
fragaria_vesca	FvH4_7g18170
malus_domestica	MD01G1095900.v1.1 MD01G1096200.v1.1 MD01G1096300.v1.1 MD01G1097600.v1.1 MD01G1131700.v1.1
prunus_persica	Prupe.2G203600_v2.0.a1
pyrus_communis	pycom01g11790 pycom01g11820 pycom01g11830 pycom01g11890 pycom01g11900 pycom01g11920 pycom01g11930 pycom01g12020 pycom01g12110 pycom01g12190 pycom01g12290 pycom01g12360 pycom01g12370 pycom01g12440 pycom01g12450 pycom01g12460 pycom01g12490
rosa_chinensis	RchiOBHm_Chr1g0361811
rosa_laevigata	RLG00000027702
rosa_multiflora	Rmu_co8192272.1_g000001 Rmu_ssc0000124.1_g000020
rosa_roxburghii	Rroxscaffold_4G00294690 Rroxscaffold_5G00338610
rosa_rugosa	Rorug01G0291500
rosa_samantha	Rh1AG302000 Rh1BG265000 Rh1DG294900
rosa_wichuraiana	Rw1G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1730
Acc36I	ACCTGC	1 cut(s)	1730
AccB1I	GGYRCC	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	1538
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	1040, 1538
AclWI	GGATC	2 cut(s)	1167, 1548
AcoI	YGGCCR	4 cut(s)	149, 155, 460, 1323
AcsI	RAATTY	7 cut(s)	74, 93, 195, 489, 1141, 1352, 1750
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	4 cut(s)	310, 746, 1452, 1604
AfeI	AGCGCT	1 cut(s)	849
AfiI	CCNNNNNNNGG	2 cut(s)	141, 687
AflII	CTTAAG	1 cut(s)	1205
AhlI	ACTAGT	1 cut(s)	311
AjiI	CACGTC	2 cut(s)	687, 1594
AjnI	CCWGG	4 cut(s)	185, 1118, 1244, 1557
AjuI	GAANNNNNNNTTGG	2 cut(s)	1900, 1932
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
Alw21I	GWGCWC	1 cut(s)	402
AlwI	GGATC	2 cut(s)	1167, 1548
AlwNI	CAGNNNCTG	2 cut(s)	740, 1115
Aor51HI	AGCGCT	1 cut(s)	849
AoxI	GGCC	4 cut(s)	149, 155, 460, 1323
ApeKI	GCWGC	6 cut(s)	556, 639, 740, 1115, 1211, 1228
ApoI	RAATTY	7 cut(s)	74, 93, 195, 489, 1141, 1352, 1750
AseI	ATTAAT	1 cut(s)	1617
AspLEI	GCGC	2 cut(s)	88, 850
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	4 cut(s)	311, 685, 1391, 1558
AsuNHI	GCTAGC	1 cut(s)	1634
AvaII	GGWCC	1 cut(s)	66
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BalI	TGGCCA	3 cut(s)	151, 157, 1325
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	2 cut(s)	458, 471
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	6 cut(s)	568, 626, 727, 1102, 1198, 1240
BccI	CCATC	9 cut(s)	5, 252, 599, 629, 704, 782, 971, 1522, 1911
BciT130I	CCWGG	4 cut(s)	187, 1120, 1246, 1559
BciVI	GTATCC	3 cut(s)	255, 571, 1087
BcnI	CCSGG	1 cut(s)	575
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	8 cut(s)	312, 602, 621, 851, 986, 1103, 1625, 1635
BfmI	CTRYAG	1 cut(s)	484
BfoI	RGCGCY	1 cut(s)	851
BfrI	CTTAAG	1 cut(s)	1205
BfuAI	ACCTGC	1 cut(s)	1730
BfuI	GTATCC	3 cut(s)	255, 571, 1087
BisI	GCNGC	6 cut(s)	557, 640, 741, 1116, 1212, 1229
BlpI	GCTNAGC	1 cut(s)	1337
BlsI	GCNGC	6 cut(s)	558, 641, 742, 1117, 1213, 1230
Bme1390I	CCNGG	5 cut(s)	187, 575, 1120, 1246, 1559
Bme18I	GGWCC	1 cut(s)	66
BmgBI	CACGTC	2 cut(s)	687, 1594
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	191, 457
BmrFI	CCNGG	5 cut(s)	187, 575, 1120, 1246, 1559
BmsI	GCATC	4 cut(s)	415, 520, 727, 1395
BmtI	GCTAGC	1 cut(s)	1638
BpmI	CTGGAG	1 cut(s)	187
Bpu1102I	GCTNAGC	1 cut(s)	1337
BpuEI	CTTGAG	2 cut(s)	860, 1868
BpuMI	CCSGG	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	6 cut(s)	152, 185, 1119, 1245, 1326, 1375
BsaWI	WCCGGW	2 cut(s)	63, 68
BsaXI	ACNNNNNCTCC	2 cut(s)	1458, 1488
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 687
Bse1I	ACTGG	2 cut(s)	224, 643
Bse3DI	GCAATG	2 cut(s)	216, 1822
Bse8I	GATNNNNATC	1 cut(s)	1158
BseBI	CCWGG	4 cut(s)	187, 1120, 1246, 1559
BseDI	CCNNGG	6 cut(s)	152, 185, 1119, 1245, 1326, 1375
BseGI	GGATG	5 cut(s)	16, 715, 1192, 1898, 1903
BseJI	GATNNNNATC	1 cut(s)	1158
BseLI	CCNNNNNNNGG	2 cut(s)	141, 687
BseMI	GCAATG	2 cut(s)	216, 1822
BseMII	CTCAG	2 cut(s)	308, 1328
BseNI	ACTGG	2 cut(s)	224, 643
BseRI	GAGGAG	1 cut(s)	1213
BseXI	GCAGC	6 cut(s)	568, 626, 727, 1102, 1198, 1240
BseYI	CCCAGC	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	4 cut(s)	151, 157, 462, 1325
BshNI	GGYRCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	5 cut(s)	64, 69, 365, 459, 575
BslI	CCNNNNNNNGG	2 cut(s)	141, 687
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	4 cut(s)	151, 157, 462, 1325
Bsp1286I	GDGCHC	3 cut(s)	402, 458, 471
Bsp1407I	TGTACA	1 cut(s)	1602
Bsp143I	GATC	3 cut(s)	1159, 1216, 1540
Bsp1720I	GCTNAGC	1 cut(s)	1337
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	2 cut(s)	1040, 1538
BspANI	GGCC	4 cut(s)	151, 157, 462, 1325
BspCNI	CTCAG	2 cut(s)	309, 1329
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	960
BspLI	GGNNCC	2 cut(s)	191, 457
BspMI	ACCTGC	1 cut(s)	1730
BspOI	GCTAGC	1 cut(s)	1638
BspPI	GGATC	2 cut(s)	1167, 1548
BspT107I	GGYRCC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	1205
BsrBI	CCGCTC	1 cut(s)	1538
BsrDI	GCAATG	2 cut(s)	216, 1822
BsrGI	TGTACA	1 cut(s)	1602
BsrI	ACTGG	2 cut(s)	224, 643
BssECI	CCNNGG	6 cut(s)	152, 185, 1119, 1245, 1326, 1375
BssMI	GATC	3 cut(s)	1159, 1216, 1540
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	3 cut(s)	152, 1326, 1375
Bst2UI	CCWGG	4 cut(s)	187, 1120, 1246, 1559
Bst4CI	ACNGT	5 cut(s)	436, 833, 889, 904, 1958
Bst6I	CTCTTC	1 cut(s)	1670
BstACI	GRCGYC	1 cut(s)	15
BstAFI	CTTAAG	1 cut(s)	1205
BstAPI	GCANNNNNTGC	2 cut(s)	740, 1347
BstAUI	TGTACA	1 cut(s)	1602
BstC8I	GCNNGC	3 cut(s)	207, 1348, 1636
BstDEI	CTNAG	6 cut(s)	229, 317, 537, 1253, 1337, 1844
BstDSI	CCRYGG	1 cut(s)	152
BstEII	GGTNACC	1 cut(s)	980
BstF5I	GGATG	5 cut(s)	16, 715, 1192, 1898, 1903
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	851
BstHHI	GCGC	2 cut(s)	88, 850
BstKTI	GATC	3 cut(s)	1162, 1219, 1543
BstMBI	GATC	3 cut(s)	1159, 1216, 1540
BstMWI	GCNNNNNNNGC	6 cut(s)	740, 964, 1121, 1347, 1573, 1666
BstNI	CCWGG	4 cut(s)	187, 1120, 1246, 1559
BstNSI	RCATGY	1 cut(s)	1350
BstPI	GGTNACC	1 cut(s)	980
BstSCI	CCNGG	5 cut(s)	185, 573, 1118, 1244, 1557
BstSFI	CTRYAG	1 cut(s)	484
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	6 cut(s)	568, 626, 727, 1102, 1198, 1240
BstX2I	RGATCY	1 cut(s)	1540
BstXI	CCANNNNNNTGG	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	1540
BsuI	GTATCC	3 cut(s)	255, 571, 1087
BsuRI	GGCC	4 cut(s)	151, 157, 462, 1325
BtgI	CCRYGG	1 cut(s)	152
BtrI	CACGTC	2 cut(s)	687, 1594
BtsCI	GGATG	5 cut(s)	16, 715, 1192, 1898, 1903
BtsIMutI	CAGTG	3 cut(s)	1028, 1169, 1375
BveI	ACCTGC	1 cut(s)	1730
Cac8I	GCNNGC	3 cut(s)	207, 1348, 1636
CaiI	CAGNNNCTG	2 cut(s)	740, 1115
CciI	TCATGA	1 cut(s)	960
CfoI	GCGC	2 cut(s)	88, 850
Cfr13I	GGNCC	1 cut(s)	66
CpoI	CGGWCCG	1 cut(s)	66
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	4 cut(s)	309, 745, 1451, 1603
CspI	CGGWCCG	1 cut(s)	66
CviQI	GTAC	4 cut(s)	309, 745, 1451, 1603
DdeI	CTNAG	6 cut(s)	229, 317, 537, 1253, 1337, 1844
DpnI	GATC	3 cut(s)	1161, 1218, 1542
DpnII	GATC	3 cut(s)	1159, 1216, 1540
EaeI	YGGCCR	4 cut(s)	149, 155, 460, 1323
Eam1104I	CTCTTC	1 cut(s)	1670
EarI	CTCTTC	1 cut(s)	1670
Eco130I	CCWWGG	3 cut(s)	152, 1326, 1375
Eco24I	GRGCYC	2 cut(s)	458, 471
Eco47I	GGWCC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	980
EcoO65I	GGTNACC	1 cut(s)	980
EcoRI	GAATTC	1 cut(s)	489
EcoRII	CCWGG	4 cut(s)	185, 1118, 1244, 1557
EcoT14I	CCWWGG	3 cut(s)	152, 1326, 1375
EcoT22I	ATGCAT	1 cut(s)	294
EcoT38I	GRGCYC	2 cut(s)	458, 471
ErhI	CCWWGG	3 cut(s)	152, 1326, 1375
FalI	AAGNNNNNCTT	2 cut(s)	1415, 1447
FauNDI	CATATG	1 cut(s)	1182
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	6 cut(s)	557, 640, 741, 1116, 1212, 1229
FokI	GGATG	5 cut(s)	23, 722, 1199, 1885, 1890
FriOI	GRGCYC	2 cut(s)	458, 471
Fsp4HI	GCNGC	6 cut(s)	557, 640, 741, 1116, 1212, 1229
FspBI	CTAG	8 cut(s)	312, 602, 621, 851, 986, 1103, 1625, 1635
GlaI	GCGC	2 cut(s)	87, 849
GluI	GCNGC	6 cut(s)	557, 640, 741, 1116, 1212, 1229
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	187
HaeII	RGCGCY	1 cut(s)	851
HaeIII	GGCC	4 cut(s)	151, 157, 462, 1325
HapII	CCGG	5 cut(s)	64, 69, 365, 459, 575
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	2 cut(s)	88, 850
Hin1I	GRCGYC	1 cut(s)	15
Hin6I	GCGC	2 cut(s)	86, 848
HinP1I	GCGC	2 cut(s)	86, 848
HindIII	AAGCTT	2 cut(s)	1932, 1940
HinfI	GANTC	6 cut(s)	26, 178, 319, 341, 1082, 1106
HpaII	CCGG	5 cut(s)	64, 69, 365, 459, 575
HphI	GGTGA	4 cut(s)	311, 685, 1391, 1558
Hpy166II	GTNNAC	6 cut(s)	375, 690, 747, 1149, 1451, 1654
Hpy188I	TCNGA	6 cut(s)	100, 240, 318, 329, 666, 1111
Hpy188III	TCNNGA	5 cut(s)	721, 961, 1420, 1589, 1694
Hpy8I	GTNNAC	6 cut(s)	375, 690, 747, 1149, 1451, 1654
Hpy99I	CGWCG	4 cut(s)	20, 56, 362, 688
HpyAV	CCTTC	6 cut(s)	46, 445, 723, 766, 1003, 1417
HpyCH4III	ACNGT	5 cut(s)	436, 833, 889, 904, 1958
HpyCH4IV	ACGT	6 cut(s)	357, 686, 692, 1488, 1593, 1725
HpyCH4V	TGCA	8 cut(s)	209, 284, 292, 428, 556, 817, 1350, 1622
HpyF10VI	GCNNNNNNNGC	6 cut(s)	740, 964, 1121, 1347, 1573, 1666
HpyF3I	CTNAG	6 cut(s)	229, 317, 537, 1253, 1337, 1844
HpySE526I	ACGT	6 cut(s)	357, 686, 692, 1488, 1593, 1725
Hsp92I	GRCGYC	1 cut(s)	15
HspAI	GCGC	2 cut(s)	86, 848
Kzo9I	GATC	3 cut(s)	1159, 1216, 1540
LmnI	GCTCC	1 cut(s)	461
Lsp1109I	GCAGC	6 cut(s)	568, 626, 727, 1102, 1198, 1240
LweI	GCATC	4 cut(s)	415, 520, 727, 1395
MaeI	CTAG	8 cut(s)	312, 602, 621, 851, 986, 1103, 1625, 1635
MaeII	ACGT	6 cut(s)	357, 686, 692, 1488, 1593, 1725
MaeIII	GTNAC	7 cut(s)	215, 758, 793, 909, 980, 1370, 1702
MalI	GATC	3 cut(s)	1161, 1218, 1542
MbiI	CCGCTC	1 cut(s)	1538
MboI	GATC	3 cut(s)	1159, 1216, 1540
MboII	GAAGA	8 cut(s)	122, 173, 781, 875, 1142, 1537, 1687, 1940
MflI	RGATCY	1 cut(s)	1540
MhlI	GDGCHC	3 cut(s)	402, 458, 471
MlsI	TGGCCA	3 cut(s)	151, 157, 1325
MluNI	TGGCCA	3 cut(s)	151, 157, 1325
MlyI	GAGTC	2 cut(s)	328, 335
MmeI	TCCRAC	1 cut(s)	1726
Mox20I	TGGCCA	3 cut(s)	151, 157, 1325
Mph1103I	ATGCAT	1 cut(s)	294
MscI	TGGCCA	3 cut(s)	151, 157, 1325
MslI	CAYNNNNRTG	4 cut(s)	137, 297, 395, 1185
Msp20I	TGGCCA	3 cut(s)	151, 157, 1325
MspA1I	CMGCKG	1 cut(s)	1231
MspCI	CTTAAG	1 cut(s)	1205
MspI	CCGG	5 cut(s)	64, 69, 365, 459, 575
MspR9I	CCNGG	5 cut(s)	187, 575, 1120, 1246, 1559
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	4 cut(s)	187, 1120, 1246, 1559
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	6 cut(s)	740, 964, 1121, 1347, 1573, 1666
NciI	CCSGG	1 cut(s)	575
NcoI	CCATGG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	1182
NdeII	GATC	3 cut(s)	1159, 1216, 1540
NheI	GCTAGC	1 cut(s)	1634
NlaIV	GGNNCC	2 cut(s)	191, 457
NmeAIII	GCCGAG	1 cut(s)	1017
NmuCI	GTSAC	5 cut(s)	215, 758, 909, 1370, 1702
NsiI	ATGCAT	1 cut(s)	294
NspI	RCATGY	1 cut(s)	1350
PaeI	GCATGC	1 cut(s)	1350
PagI	TCATGA	1 cut(s)	960
PaqCI	CACCTGC	1 cut(s)	1730
PcsI	WCGNNNNNNNCGW	1 cut(s)	689
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	4 cut(s)	26, 178, 1082, 1106
PfoI	TCCNGGA	2 cut(s)	573, 1557
PkrI	GCNGC	6 cut(s)	558, 641, 742, 1117, 1213, 1230
PleI	GAGTC	2 cut(s)	327, 335
PpsI	GAGTC	2 cut(s)	327, 335
PshBI	ATTAAT	1 cut(s)	1617
Psp6I	CCWGG	4 cut(s)	185, 1118, 1244, 1557
PspEI	GGTNACC	1 cut(s)	980
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	4 cut(s)	185, 1118, 1244, 1557
PspN4I	GGNNCC	2 cut(s)	191, 457
PspPI	GGNCC	1 cut(s)	66
PstNI	CAGNNNCTG	2 cut(s)	740, 1115
PsuI	RGATCY	1 cut(s)	1540
PvuII	CAGCTG	1 cut(s)	1231
RsaI	GTAC	4 cut(s)	310, 746, 1452, 1604
RsaNI	GTAC	4 cut(s)	309, 745, 1451, 1603
RseI	CAYNNNNRTG	4 cut(s)	137, 297, 395, 1185
Rsr2I	CGGWCCG	1 cut(s)	66
RsrII	CGGWCCG	1 cut(s)	66
SatI	GCNGC	6 cut(s)	557, 640, 741, 1116, 1212, 1229
Sau3AI	GATC	3 cut(s)	1159, 1216, 1540
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	328, 335
ScrFI	CCNGG	5 cut(s)	187, 575, 1120, 1246, 1559
SduI	GDGCHC	3 cut(s)	402, 458, 471
SfaNI	GCATC	4 cut(s)	415, 520, 727, 1395
SfcI	CTRYAG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	4 cut(s)	137, 297, 395, 1185
SmlI	CTYRAG	3 cut(s)	839, 1205, 1883
SmoI	CTYRAG	3 cut(s)	839, 1205, 1883
SpeI	ACTAGT	1 cut(s)	311
SphI	GCATGC	1 cut(s)	1350
SsiI	CCGC	2 cut(s)	1040, 1538
SspI	AATATT	2 cut(s)	279, 700
SspMI	CTAG	8 cut(s)	312, 602, 621, 851, 986, 1103, 1625, 1635
StyD4I	CCNGG	5 cut(s)	185, 573, 1118, 1244, 1557
StyI	CCWWGG	3 cut(s)	152, 1326, 1375
TaaI	ACNGT	5 cut(s)	436, 833, 889, 904, 1958
TaiI	ACGT	6 cut(s)	360, 689, 695, 1491, 1596, 1728
TaqI	TCGA	6 cut(s)	24, 51, 78, 199, 520, 683
TatI	WGTACW	2 cut(s)	1450, 1602
TfiI	GAWTC	4 cut(s)	26, 178, 1082, 1106
TscAI	CASTG	3 cut(s)	1035, 1169, 1375
TseFI	GTSAC	5 cut(s)	215, 758, 909, 1370, 1702
TseI	GCWGC	6 cut(s)	556, 639, 740, 1115, 1211, 1228
Tsp45I	GTSAC	5 cut(s)	215, 758, 909, 1370, 1702
TspGWI	ACGGA	1 cut(s)	965
TspRI	CASTG	3 cut(s)	1035, 1169, 1375
Vha464I	CTTAAG	1 cut(s)	1205
VpaK11BI	GGWCC	1 cut(s)	66
VspI	ATTAAT	1 cut(s)	1617
XapI	RAATTY	7 cut(s)	74, 93, 195, 489, 1141, 1352, 1750
XceI	RCATGY	1 cut(s)	1350
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	8 cut(s)	312, 602, 621, 851, 986, 1103, 1625, 1635
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.