Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002914

Physical Location & Seq

Genomic Coordinates Reverse (-)

6433873 .. 6437245

Gene Structure 3373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTCAGATGGTGAAGGATCGGATTCGGAGGATTATCCGTCAATCAGAGACTTGGACTCAGAAGGCGAAGAGAATGATTCCTCTGGAGATGAGGGTGTTATCAACACAAGCGACAATGATGGCATGGCCAGTGATTCTGGTGATGATGATGATGAAAGTGATAGCTCTGAACTTGGTGAGGGAGTTGAGGAGAGTGATTCATCTGAGGATGAGGTTGTTCCTCGAAATACTGTCGGTGATGTTCCCTTGGAGTGGTATCGGGATGAGAAACATATTGGTTATGACATTAAAGGGAAGAAGATAAAGAAGAAGGAAAAAGAAGATAAGTTGCAATCCTTTCTTGCTAGTGCTGACGATTCAAAGAACTGGCGCAAAATTTATGATGAATATAACGATGAGGAAGTAGAACTAACAAAAGAAGATATCAAATCGATTAGCAGACTACTCGAAGGAAAGGCTCCACATGGTGACTTTGATCCATATGCGCCATATGTTGATTGGTTTAAATGGGATGACTCCAAGCATCCACTGTCAAATGCACCTGAACCCAAGAGACGATTCATTCCTTCAAAATCTGAAAGTAAACTGGTTAATAAGATTAAGTTGGCCATGCGCAAGGGTTTAATTAAGCCTAAAAGGTCTAAAGAGGAAGAAGAAGATGAAGAAAGTGTTTATCCATTGTGGGAAGATGACTCTAATTCAACGGAAAAGAATAACCATCTAACTTACATTCCTGCACCAAAGCCAAAGTTGCCTGGCCACGAGGAGTCCTTCAATCCATCTTTAGAATACATCCCAACACAAGAAGAGGTCAACTCTTACCAGTTAATGTATGAAGAAGACCGTCCTAAATTTATACCTAAAAGGTTTGCAAATATGAGAAGCATCCCTGCATATGAGAATGCTGTGAAGGAATGCTTTGAGAGATGTTTGGATCTATATTTGTGCCCCAGAGTCCGAAAGAAACGTCTTAATATAAACCCTGAATCTCTCAAGCCCAAGCTACCGAGCCGAACTGAACTTAAGCCTTACCCTGTAGCATGTTATCTTGAGTATAGAGGCCACGAGGATGCAGTTACATCAGTTTCTGTAGAAGCTTCAGGGCAGTGGATTGCATCAGGTTCATTGGATGGAACTTTGCGTATTTGGGAGGTTGAAACTGGTAGATGTGTCAAAATCTGCGATATTGGTGAAGCCGTCAAATATGTGGCTTGGAATCCTAATCCTGAGCATTCTATAGTGGCTGTCTCGGCGGGACAAGACGTACTTCTTTTGAACACTGGTTGTGGGACTGAAGAAGTACAGAAAAGAACTAAAGAACTTCTCTCAGTTGAGATGCCTATGCCCGACGACTCTGGTCACATTCAGTGTAAGCTGGCTTCACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

463

Amino Acids

52.43

Weight (kDa)

4.71

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	86 - 345	5.4e-99	BOP1NT (NUC169) domain
WD40	PF00400	348 - 383	1.2e-09	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	348 - 419	3.1e-06	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	350 - 428	5.2e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	351 - 408	1.1e-07	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	351 - 415	3.9e-06	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	352 - 426	8.3e-12	WDR5 beta-propeller domain
EIF3I	PF24805	352 - 414	6.2e-09	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	352 - 427	2.1e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	355 - 420	6.9e-11	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40360 AT2G40360
fragaria_vesca	FvH4_5g21650 FvH4_5g21650 FvH4_5g21650
malus_domestica	MD05G1062400.v1.1 MD10G1070100.v1.1
prunus_persica	Prupe.6G114000_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1 Prupe.7G053600_v2.0.a1
pyrus_communis	pycom05g05370 pycom05g05390 pycom10g05570
rosa_chinensis	RchiOBHm_Chr7g0209131 RchiOBHm_Chr7g0241521 RchiOBHm_Chr7g0241531 RchiOBHm_Chr7g0241541
rosa_laevigata	RLG00000000568
rosa_multiflora	Rmu_sc0000821.1_g000025 Rmu_sc0002268.1_g000023
rosa_roxburghii	Rroxscaffold_3G00218950 Rroxscaffold_3G00249700
rosa_rugosa	Rorug07G0109700 Rorug07G0109800 Rorug07G0345000
rosa_samantha	Rh7AG243600 Rh7AG499500 Rh7AG499600 Rh7BG238700 Rh7BG470600 Rh7BG470700 Rh7CG259100 Rh7DG250600 Rh7DG484000 Rh7DG484200
rosa_wichuraiana	Rw7G020660 Rw7G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	614
AciI	CCGC	1 cut(s)	1253
AclWI	GGATC	3 cut(s)	25, 470, 942
AcoI	YGGCCR	3 cut(s)	126, 606, 757
AcsI	RAATTY	2 cut(s)	375, 851
AcuI	CTGAAG	2 cut(s)	1083, 1314
AdeI	CACNNNGTG	1 cut(s)	467
AfaI	GTAC	2 cut(s)	1266, 1302
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflII	CTTAAG	1 cut(s)	1022
AgsI	TTSAA	6 cut(s)	360, 570, 702, 775, 1157, 1276
AjnI	CCWGG	1 cut(s)	754
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AluBI	AGCT	4 cut(s)	165, 1003, 1097, 1375
AluI	AGCT	4 cut(s)	165, 1003, 1097, 1375
Alw26I	GTCTC	3 cut(s)	42, 547, 1252
AlwI	GGATC	3 cut(s)	25, 470, 942
AlwNI	CAGNNNCTG	1 cut(s)	1088
AoxI	GGCC	4 cut(s)	126, 606, 757, 1060
ApoI	RAATTY	2 cut(s)	375, 851
ArsI	GACNNNNNNTTYG	2 cut(s)	952, 984
AspLEI	GCGC	3 cut(s)	372, 487, 615
AsuHPI	GGTGA	6 cut(s)	23, 152, 188, 248, 479, 1202
BaeGI	GKGCMC	1 cut(s)	950
BalI	TGGCCA	3 cut(s)	128, 608, 759
BarI	GAAGNNNNNNTAC	1 cut(s)	1363
BauI	CACGAG	2 cut(s)	761, 1064
BbsI	GAAGAC	1 cut(s)	846
BccI	CCATC	5 cut(s)	2, 113, 726, 787, 1124
BceAI	ACGGC	1 cut(s)	1181
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciT130I	CCWGG	1 cut(s)	756
BcoDI	GTCTC	3 cut(s)	42, 547, 1252
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	3 cut(s)	1035, 1089, 1236
BfrI	CTTAAG	1 cut(s)	1022
Bme1390I	CCNGG	1 cut(s)	756
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	756
BmsI	GCATC	5 cut(s)	532, 894, 1060, 1124, 1326
BoxI	GACNNNNGTC	1 cut(s)	1356
BpiI	GAAGAC	1 cut(s)	846
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	1227
BpuEI	CTTGAG	2 cut(s)	977, 1070
Bsa29I	ATCGAT	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	6 cut(s)	129, 371, 591, 823, 1165, 1285
BseBI	CCWGG	1 cut(s)	756
BseCI	ATCGAT	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	8 cut(s)	214, 268, 517, 523, 792, 885, 1075, 1135
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	4 cut(s)	72, 195, 1218, 1341
BseNI	ACTGG	6 cut(s)	129, 371, 591, 823, 1165, 1285
BseRI	GAGGAG	2 cut(s)	203, 779
BseSI	GKGCMC	1 cut(s)	950
BsgI	GTGCAG	1 cut(s)	720
BshFI	GGCC	4 cut(s)	128, 608, 759, 1062
BshVI	ATCGAT	1 cut(s)	431
BslFI	GGGAC	2 cut(s)	1269, 1303
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	3 cut(s)	42, 547, 1252
BsmBI	CGTCTC	1 cut(s)	547
BsmFI	GGGAC	2 cut(s)	1269, 1303
BsmI	GAATGC	3 cut(s)	907, 920, 1231
BsnI	GGCC	4 cut(s)	128, 608, 759, 1062
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp143I	GATC	3 cut(s)	17, 475, 934
BspACI	CCGC	1 cut(s)	1253
BspANI	GGCC	4 cut(s)	128, 608, 759, 1062
BspCNI	CTCAG	4 cut(s)	71, 196, 1219, 1340
BspDI	ATCGAT	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	459
BspPI	GGATC	3 cut(s)	25, 470, 942
BspTI	CTTAAG	1 cut(s)	1022
BsrI	ACTGG	6 cut(s)	129, 371, 591, 823, 1165, 1285
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	3 cut(s)	17, 475, 934
BssSI	CACGAG	2 cut(s)	761, 1064
BssT1I	CCWWGG	1 cut(s)	246
Bst2BI	CACGAG	2 cut(s)	761, 1064
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	232, 531, 845
Bst6I	CTCTTC	2 cut(s)	63, 801
BstAFI	CTTAAG	1 cut(s)	1022
BstC8I	GCNNGC	1 cut(s)	1377
BstDEI	CTNAG	4 cut(s)	58, 204, 1227, 1327
BstF5I	GGATG	8 cut(s)	214, 268, 517, 523, 792, 885, 1075, 1135
BstHHI	GCGC	3 cut(s)	372, 487, 615
BstKTI	GATC	3 cut(s)	20, 478, 937
BstMAI	GTCTC	3 cut(s)	42, 547, 1252
BstMBI	GATC	3 cut(s)	17, 475, 934
BstMWI	GCNNNNNNNGC	2 cut(s)	751, 1250
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	1 cut(s)	1044
BstPAI	GACNNNNGTC	1 cut(s)	1356
BstSCI	CCNGG	1 cut(s)	754
BstSFI	CTRYAG	3 cut(s)	1035, 1089, 1236
BstSLI	GKGCMC	1 cut(s)	950
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
Bsu15I	ATCGAT	1 cut(s)	431
BsuRI	GGCC	4 cut(s)	128, 608, 759, 1062
BsuTUI	ATCGAT	1 cut(s)	431
BtsCI	GGATG	8 cut(s)	214, 268, 517, 523, 792, 885, 1075, 1135
BtsI	GCAGTG	1 cut(s)	1112
BtsIMutI	CAGTG	5 cut(s)	136, 527, 1112, 1278, 1373
Cac8I	GCNNGC	1 cut(s)	1377
CaiI	CAGNNNCTG	1 cut(s)	1088
CfoI	GCGC	3 cut(s)	372, 487, 615
ClaI	ATCGAT	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	1265, 1301
CviAII	CATG	4 cut(s)	124, 464, 610, 1041
CviQI	GTAC	2 cut(s)	1265, 1301
DdeI	CTNAG	4 cut(s)	58, 204, 1227, 1327
DpnI	GATC	3 cut(s)	19, 477, 936
DpnII	GATC	3 cut(s)	17, 475, 934
DraI	TTTAAA	1 cut(s)	505
DraIII	CACNNNGTG	1 cut(s)	467
EaeI	YGGCCR	3 cut(s)	126, 606, 757
Eam1104I	CTCTTC	2 cut(s)	63, 801
EarI	CTCTTC	2 cut(s)	63, 801
Eco130I	CCWWGG	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	424
Eco57I	CTGAAG	2 cut(s)	1083, 1314
EcoRII	CCWGG	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	4 cut(s)	127, 467, 613, 1044
FalI	AAGNNNNNCTT	4 cut(s)	902, 934, 1251, 1283
FaqI	GGGAC	2 cut(s)	1269, 1303
FatI	CATG	4 cut(s)	123, 463, 609, 1040
FauI	CCCGC	1 cut(s)	1246
FauNDI	CATATG	3 cut(s)	481, 490, 895
FokI	GGATG	8 cut(s)	221, 275, 510, 524, 779, 872, 1082, 1142
FspBI	CTAG	1 cut(s)	345
FspI	TGCGCA	1 cut(s)	614
GlaI	GCGC	3 cut(s)	371, 486, 614
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	4 cut(s)	128, 608, 759, 1062
HhaI	GCGC	3 cut(s)	372, 487, 615
Hin1II	CATG	4 cut(s)	127, 467, 613, 1044
Hin6I	GCGC	3 cut(s)	370, 485, 613
HinP1I	GCGC	3 cut(s)	370, 485, 613
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HindIII	AAGCTT	1 cut(s)	1095
HphI	GGTGA	6 cut(s)	23, 152, 188, 248, 479, 1202
Hpy166II	GTNNAC	2 cut(s)	584, 814
Hpy188I	TCNGA	9 cut(s)	7, 22, 28, 47, 61, 169, 205, 577, 959
Hpy188III	TCNNGA	5 cut(s)	84, 260, 1049, 1226, 1383
Hpy8I	GTNNAC	2 cut(s)	584, 814
Hpy99I	CGWCG	1 cut(s)	1352
HpyAV	CCTTC	7 cut(s)	8, 56, 304, 443, 576, 781, 904
HpyCH4III	ACNGT	3 cut(s)	232, 531, 845
HpyCH4IV	ACGT	2 cut(s)	967, 1263
HpyCH4V	TGCA	7 cut(s)	331, 539, 737, 872, 893, 1073, 1115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	751, 1250
HpyF3I	CTNAG	4 cut(s)	58, 204, 1227, 1327
HpySE526I	ACGT	2 cut(s)	967, 1263
Hsp92II	CATG	4 cut(s)	127, 467, 613, 1044
HspAI	GCGC	3 cut(s)	370, 485, 613
Kzo9I	GATC	3 cut(s)	17, 475, 934
LmnI	GCTCC	1 cut(s)	463
LweI	GCATC	5 cut(s)	532, 894, 1060, 1124, 1326
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	967, 1263
MaeIII	GTNAC	3 cut(s)	467, 1075, 1358
MalI	GATC	3 cut(s)	19, 477, 936
MboI	GATC	3 cut(s)	17, 475, 934
MflI	RGATCY	1 cut(s)	934
MhlI	GDGCHC	1 cut(s)	950
MlsI	TGGCCA	3 cut(s)	128, 608, 759
MluCI	AATT	4 cut(s)	375, 624, 697, 851
MluNI	TGGCCA	3 cut(s)	128, 608, 759
MlyI	GAGTC	6 cut(s)	50, 509, 686, 776, 963, 1346
Mox20I	TGGCCA	3 cut(s)	128, 608, 759
MscI	TGGCCA	3 cut(s)	128, 608, 759
MseI	TTAA	9 cut(s)	288, 504, 591, 600, 623, 627, 827, 972, 1023
MslI	CAYNNNNRTG	1 cut(s)	1068
Msp20I	TGGCCA	3 cut(s)	128, 608, 759
MspCI	CTTAAG	1 cut(s)	1022
MspR9I	CCNGG	1 cut(s)	756
Mva1269I	GAATGC	3 cut(s)	907, 920, 1231
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	2 cut(s)	751, 1250
NdeI	CATATG	3 cut(s)	481, 490, 895
NdeII	GATC	3 cut(s)	17, 475, 934
NlaIII	CATG	4 cut(s)	127, 467, 613, 1044
NlaIV	GGNNCC	1 cut(s)	459
NmeAIII	GCCGAG	1 cut(s)	1229
NmuCI	GTSAC	2 cut(s)	467, 1358
NsbI	TGCGCA	1 cut(s)	614
NspI	RCATGY	1 cut(s)	1044
PacI	TTAATTAA	1 cut(s)	627
PctI	GAATGC	3 cut(s)	907, 920, 1231
PfeI	GAWTC	8 cut(s)	23, 77, 134, 197, 356, 558, 986, 1216
PleI	GAGTC	6 cut(s)	50, 509, 686, 775, 962, 1346
PpsI	GAGTC	6 cut(s)	50, 509, 686, 775, 962, 1346
PshAI	GACNNNNGTC	1 cut(s)	1356
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	1 cut(s)	934
RsaI	GTAC	2 cut(s)	1266, 1302
RsaNI	GTAC	2 cut(s)	1265, 1301
RseI	CAYNNNNRTG	1 cut(s)	1068
SaqAI	TTAA	9 cut(s)	288, 504, 591, 600, 623, 627, 827, 972, 1023
Sau3AI	GATC	3 cut(s)	17, 475, 934
SchI	GAGTC	6 cut(s)	50, 509, 686, 776, 963, 1346
ScrFI	CCNGG	1 cut(s)	756
SduI	GDGCHC	1 cut(s)	950
SfaNI	GCATC	5 cut(s)	532, 894, 1060, 1124, 1326
SfcI	CTRYAG	3 cut(s)	1035, 1089, 1236
SmiMI	CAYNNNNRTG	1 cut(s)	1068
SmlI	CTYRAG	3 cut(s)	992, 1022, 1049
SmoI	CTYRAG	3 cut(s)	992, 1022, 1049
Sse9I	AATT	4 cut(s)	375, 624, 697, 851
SsiI	CCGC	1 cut(s)	1253
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	754
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	232, 531, 845
TaiI	ACGT	2 cut(s)	970, 1266
TaqI	TCGA	3 cut(s)	223, 431, 447
TasI	AATT	4 cut(s)	375, 624, 697, 851
TatI	WGTACW	1 cut(s)	1300
TfiI	GAWTC	8 cut(s)	23, 77, 134, 197, 356, 558, 986, 1216
Tru1I	TTAA	9 cut(s)	288, 504, 591, 600, 623, 627, 827, 972, 1023
Tru9I	TTAA	9 cut(s)	288, 504, 591, 600, 623, 627, 827, 972, 1023
TscAI	CASTG	5 cut(s)	136, 534, 1112, 1285, 1373
TseFI	GTSAC	2 cut(s)	467, 1358
Tsp45I	GTSAC	2 cut(s)	467, 1358
TspDTI	ATGAA	7 cut(s)	168, 189, 399, 550, 675, 849, 1113
TspGWI	ACGGA	2 cut(s)	27, 719
TspRI	CASTG	5 cut(s)	136, 534, 1112, 1285, 1373
Vha464I	CTTAAG	1 cut(s)	1022
XapI	RAATTY	2 cut(s)	375, 851
XceI	RCATGY	1 cut(s)	1044
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.