Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

16807548 .. 16808228

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTGAGGTTCCTATCTTTTGTGGCGCGTAACACGTCCAAACTTCAATCTTTTAAGACGATTCCAATTCACTTTACTCTCCTTGAACCGCTGATCTCATCTCTCAGTCTCTCTTTAGCGCGACGACACGCGGATCCACGTCGAACTCTCTCTGAGTCTCACTTGCCCTCAATAGAAATCGGATCGGACTCAGCGCGAGGTAGAGCATGTCGAACCGAAATTCTCACCTGCGACCCGCCGGAGGCAAGGGTTTCCCAAAACCCCAAAAGATCTTCGTCCCCAGGAATCAAGACCACAACAATCCAATCCCTCGAGAGCCCAATCCAAATCCCAATCCCACGCTCTTCACCTCAATCCACCAATCGCTCTTCAAGCAGCAATCCAATGCCCGAAACTTCCACTGCTGCTACGGCGCAGCCGTCGGGGAGCAGGGTTCAGATGTGGGAGAAAGGTGAGTGGGTGCCGAGCAGAGCTCGGGATGGCAATTTCGTAAATTACTTGCCCCAGTACGAGGCGGTGGCGGCTGGGCCCGGTGCTGACGAAGGCGAATTGAACGCCCTGCAGTCGCAGCGAGTGGTGGATCTTCTTAACAGAGAGCTCTCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

203

Amino Acids

22.16

Weight (kDa)

9.68

Isoelectric Point (pI)

71.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	460
AccII	CGCG	4 cut(s)	28, 121, 131, 196
AciI	CCGC	5 cut(s)	89, 131, 236, 515, 521
AclWI	GGATC	4 cut(s)	128, 141, 190, 588
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	2 cut(s)	241, 511
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	47, 86, 372, 553
AjiI	CACGTC	2 cut(s)	36, 140
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	2 cut(s)	473, 598
AluI	AGCT	2 cut(s)	473, 598
Alw21I	GWGCWC	2 cut(s)	475, 600
Alw26I	GTCTC	2 cut(s)	113, 162
AlwI	GGATC	4 cut(s)	128, 141, 190, 588
Ama87I	CYCGRG	2 cut(s)	311, 474
AoxI	GGCC	1 cut(s)	527
ApaI	GGGCCC	1 cut(s)	531
ApeKI	GCWGC	4 cut(s)	375, 404, 415, 568
ApoI	RAATTY	1 cut(s)	219
AspLEI	GCGC	4 cut(s)	28, 121, 196, 415
AspS9I	GGNCC	2 cut(s)	527, 528
AsuC2I	CCSGG	1 cut(s)	531
AsuHPI	GGTGA	3 cut(s)	217, 339, 464
AvaI	CYCGRG	2 cut(s)	311, 474
BaeGI	GKGCMC	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	4 cut(s)	320, 475, 531, 600
Bbv12I	GWGCWC	2 cut(s)	475, 600
BbvI	GCAGC	4 cut(s)	387, 391, 427, 580
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	2 cut(s)	403, 426
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	113, 162
BfaI	CTAG	1 cut(s)	607
BfmI	CTRYAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	269
BisI	GCNGC	5 cut(s)	376, 405, 416, 522, 569
BlsI	GCNGC	5 cut(s)	377, 406, 417, 523, 570
Bme1390I	CCNGG	2 cut(s)	282, 531
BmeT110I	CYCGRG	2 cut(s)	311, 474
BmgBI	CACGTC	2 cut(s)	36, 140
BmgT120I	GGNCC	2 cut(s)	527, 528
BmiI	GGNNCC	4 cut(s)	11, 135, 462, 529
BmrFI	CCNGG	2 cut(s)	282, 531
BmrI	ACTGGG	1 cut(s)	499
BmuI	ACTGGG	1 cut(s)	499
BplI	GAGNNNNNCTC	2 cut(s)	457, 489
BpuMI	CCSGG	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 511
Bse1I	ACTGG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	2 cut(s)	241, 511
BseMII	CTCAG	3 cut(s)	118, 144, 204
BseNI	ACTGG	1 cut(s)	505
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	4 cut(s)	387, 391, 427, 580
BseYI	CCCAGC	1 cut(s)	524
Bsh1236I	CGCG	4 cut(s)	28, 121, 131, 196
BshFI	GGCC	1 cut(s)	529
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	475, 600
BsiHKCI	CYCGRG	2 cut(s)	311, 474
BsiSI	CCGG	2 cut(s)	239, 531
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	241, 511
BsmAI	GTCTC	2 cut(s)	113, 162
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	529
BsoBI	CYCGRG	2 cut(s)	311, 474
Bsp120I	GGGCCC	1 cut(s)	527
Bsp1286I	GDGCHC	4 cut(s)	320, 475, 531, 600
Bsp143I	GATC	5 cut(s)	93, 133, 182, 269, 580
BspACI	CCGC	5 cut(s)	89, 131, 236, 515, 521
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	3 cut(s)	117, 145, 203
BspFNI	CGCG	4 cut(s)	28, 121, 131, 196
BspLI	GGNNCC	4 cut(s)	11, 135, 462, 529
BspMAI	CTGCAG	1 cut(s)	564
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	4 cut(s)	128, 141, 190, 588
BspQI	GCTCTTC	2 cut(s)	349, 373
BspT107I	GGYRCC	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	5 cut(s)	93, 133, 182, 269, 580
Bst2UI	CCWGG	1 cut(s)	282
Bst6I	CTCTTC	2 cut(s)	349, 373
BstDEI	CTNAG	3 cut(s)	104, 153, 190
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	4 cut(s)	28, 121, 131, 196
BstHHI	GCGC	4 cut(s)	28, 121, 196, 415
BstKTI	GATC	5 cut(s)	96, 136, 185, 272, 583
BstMAI	GTCTC	2 cut(s)	113, 162
BstMBI	GATC	5 cut(s)	93, 133, 182, 269, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	372, 410, 521, 568
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	2 cut(s)	280, 529
BstSFI	CTRYAG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	531
BstUI	CGCG	4 cut(s)	28, 121, 131, 196
BstV1I	GCAGC	4 cut(s)	387, 391, 427, 580
BstX2I	RGATCY	3 cut(s)	133, 269, 580
BstYI	RGATCY	3 cut(s)	133, 269, 580
BsuRI	GGCC	1 cut(s)	529
BtrI	CACGTC	2 cut(s)	36, 140
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	236
CfoI	GCGC	4 cut(s)	28, 121, 196, 415
Cfr13I	GGNCC	2 cut(s)	527, 528
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	6 cut(s)	318, 418, 473, 524, 529, 598
CviKI_1	RGCY	6 cut(s)	318, 418, 473, 524, 529, 598
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	3 cut(s)	104, 153, 190
DpnI	GATC	5 cut(s)	95, 135, 184, 271, 582
DpnII	GATC	5 cut(s)	93, 133, 182, 269, 580
Eam1104I	CTCTTC	2 cut(s)	349, 373
EarI	CTCTTC	2 cut(s)	349, 373
Ecl136II	GAGCTC	2 cut(s)	473, 598
Eco24I	GRGCYC	4 cut(s)	320, 475, 531, 600
Eco53kI	GAGCTC	2 cut(s)	473, 598
Eco88I	CYCGRG	2 cut(s)	311, 474
EcoICRI	GAGCTC	2 cut(s)	473, 598
EcoRII	CCWGG	1 cut(s)	280
EcoT38I	GRGCYC	4 cut(s)	320, 475, 531, 600
FaeI	CATG	1 cut(s)	210
FaiI	YATR	1 cut(s)	208
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	206
FauI	CCCGC	1 cut(s)	243
Fnu4HI	GCNGC	5 cut(s)	376, 405, 416, 522, 569
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	4 cut(s)	320, 475, 531, 600
Fsp4HI	GCNGC	5 cut(s)	376, 405, 416, 522, 569
FspBI	CTAG	1 cut(s)	607
GlaI	GCGC	4 cut(s)	27, 120, 195, 414
GluI	GCNGC	5 cut(s)	376, 405, 416, 522, 569
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	2 cut(s)	239, 531
HhaI	GCGC	4 cut(s)	28, 121, 196, 415
Hin1II	CATG	1 cut(s)	210
Hin6I	GCGC	4 cut(s)	26, 119, 194, 413
HinP1I	GCGC	4 cut(s)	26, 119, 194, 413
HinfI	GANTC	4 cut(s)	61, 155, 188, 285
HpaII	CCGG	2 cut(s)	239, 531
HphI	GGTGA	3 cut(s)	217, 339, 464
Hpy188I	TCNGA	4 cut(s)	154, 182, 187, 438
Hpy188III	TCNNGA	3 cut(s)	289, 313, 476
Hpy99I	CGWCG	3 cut(s)	126, 144, 424
HpyAV	CCTTC	1 cut(s)	536
HpyCH4IV	ACGT	2 cut(s)	35, 139
HpyCH4V	TGCA	1 cut(s)	562
HpyF10VI	GCNNNNNNNGC	4 cut(s)	372, 410, 521, 568
HpyF3I	CTNAG	3 cut(s)	104, 153, 190
HpySE526I	ACGT	2 cut(s)	35, 139
Hsp92II	CATG	1 cut(s)	210
HspAI	GCGC	4 cut(s)	26, 119, 194, 413
Kzo9I	GATC	5 cut(s)	93, 133, 182, 269, 580
LguI	GCTCTTC	2 cut(s)	349, 373
LmnI	GCTCC	1 cut(s)	426
LpnPI	CCDG	9 cut(s)	241, 252, 267, 294, 415, 510, 518, 544, 572
Lsp1109I	GCAGC	4 cut(s)	387, 391, 427, 580
MaeI	CTAG	1 cut(s)	607
MaeII	ACGT	2 cut(s)	35, 139
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	5 cut(s)	95, 135, 184, 271, 582
MboI	GATC	5 cut(s)	93, 133, 182, 269, 580
MboII	GAAGA	4 cut(s)	264, 336, 360, 575
MflI	RGATCY	3 cut(s)	133, 269, 580
MhlI	GDGCHC	4 cut(s)	320, 475, 531, 600
MluCI	AATT	5 cut(s)	66, 219, 484, 493, 548
MlyI	GAGTC	2 cut(s)	164, 182
MnlI	CCTC	6 cut(s)	178, 191, 235, 320, 360, 505
MseI	TTAA	2 cut(s)	54, 588
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	2 cut(s)	239, 531
MspR9I	CCNGG	2 cut(s)	282, 531
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	4 cut(s)	28, 121, 131, 196
MwoI	GCNNNNNNNGC	4 cut(s)	372, 410, 521, 568
NciI	CCSGG	1 cut(s)	531
NdeII	GATC	5 cut(s)	93, 133, 182, 269, 580
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	4 cut(s)	11, 135, 462, 529
NmeAIII	GCCGAG	1 cut(s)	489
NspI	RCATGY	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	236
PciSI	GCTCTTC	2 cut(s)	349, 373
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	61, 285
PkrI	GCNGC	5 cut(s)	377, 406, 417, 523, 570
PleI	GAGTC	2 cut(s)	163, 182
PpsI	GAGTC	2 cut(s)	163, 182
Psp124BI	GAGCTC	2 cut(s)	475, 600
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	4 cut(s)	11, 135, 462, 529
PspOMI	GGGCCC	1 cut(s)	527
PspPI	GGNCC	2 cut(s)	527, 528
PstI	CTGCAG	1 cut(s)	564
PsuI	RGATCY	3 cut(s)	133, 269, 580
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SacI	GAGCTC	2 cut(s)	475, 600
SapI	GCTCTTC	2 cut(s)	349, 373
SaqAI	TTAA	2 cut(s)	54, 588
SatI	GCNGC	5 cut(s)	376, 405, 416, 522, 569
Sau3AI	GATC	5 cut(s)	93, 133, 182, 269, 580
Sau96I	GGNCC	2 cut(s)	527, 528
SchI	GAGTC	2 cut(s)	164, 182
ScrFI	CCNGG	2 cut(s)	282, 531
SduI	GDGCHC	4 cut(s)	320, 475, 531, 600
SetI	ASST	9 cut(s)	11, 38, 142, 202, 230, 352, 454, 475, 600
SfcI	CTRYAG	1 cut(s)	560
Sfr274I	CTCGAG	1 cut(s)	311
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	66, 219, 484, 493, 548
SsiI	CCGC	5 cut(s)	89, 131, 236, 515, 521
SspMI	CTAG	1 cut(s)	607
SstI	GAGCTC	2 cut(s)	475, 600
StyD4I	CCNGG	2 cut(s)	280, 529
TaiI	ACGT	2 cut(s)	38, 142
TaqI	TCGA	3 cut(s)	142, 211, 312
TasI	AATT	5 cut(s)	66, 219, 484, 493, 548
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	2 cut(s)	61, 285
Tru1I	TTAA	2 cut(s)	54, 588
Tru9I	TTAA	2 cut(s)	54, 588
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	4 cut(s)	375, 404, 415, 568
TspRI	CASTG	1 cut(s)	406
XapI	RAATTY	1 cut(s)	219
XceI	RCATGY	1 cut(s)	210
XhoI	CTCGAG	1 cut(s)	311
XspI	CTAG	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.