Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000083.1

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

52546 .. 52953

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000083.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgtcgagtcaccggaaccctcaaggcaacaccaataggcaagccagaggaagcaagggtttcgccaaaacccaaaaggtcttcatccccaaaaatcaaggccagaatcgtcccagaagccctaaatccccaaatcccacgctctctgcctctcttcggcaattgctatcccagccgtccaatgccgaagtttcaagtgctgctgcttctgcgccgtcggagagtagtagtagtagtagtagggttcggatgggagagagaggtgagtgggtgtcgaccaagggaaatttcgtgaattacttgccccaagatgaggcagttgtcgctggcctcggcgccgacgaaggtggattgaatgccgtggagtctcagagagtcgtcaattttctcaatagagagctttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

135

Amino Acids

14.43

Weight (kDa)

10.6

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	156, 313
AgsI	TTSAA	2 cut(s)	195, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	372
AoxI	GGCC	2 cut(s)	100, 328
ApeKI	GCWGC	2 cut(s)	200, 203
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	2 cut(s)	214, 338
AsuHPI	GGTGA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	187, 190
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	3 cut(s)	160, 199, 344
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcoDI	GTCTC	1 cut(s)	372
BfoI	RGCGCY	1 cut(s)	339
BisI	GCNGC	2 cut(s)	201, 204
BlsI	GCNGC	2 cut(s)	202, 205
BmiI	GGNNCC	2 cut(s)	17, 337
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	279, 331, 360
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 313
BseDI	CCNNGG	3 cut(s)	279, 331, 360
BseGI	GGATG	2 cut(s)	84, 255
BseLI	CCNNNNNNNGG	2 cut(s)	156, 313
BseMII	CTCAG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	187, 190
BseYI	CCCAGC	1 cut(s)	171
BshFI	GGCC	2 cut(s)	102, 330
BshNI	GGYRCC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	156, 313
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	102, 330
BspANI	GGCC	2 cut(s)	102, 330
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	17, 337
BspT107I	GGYRCC	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	279, 331, 360
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	42, 328
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	84, 255
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	2 cut(s)	214, 338
BstMAI	GTCTC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 209, 323
BstV1I	GCAGC	2 cut(s)	187, 190
BstV2I	GAAGAC	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	102, 330
BtgI	CCRYGG	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	84, 255
Cac8I	GCNNGC	2 cut(s)	42, 328
CfoI	GCGC	2 cut(s)	214, 338
CviJI	RGCY	6 cut(s)	44, 102, 120, 175, 330, 400
CviKI_1	RGCY	6 cut(s)	44, 102, 120, 175, 330, 400
DdeI	CTNAG	1 cut(s)	369
DinI	GGCGCC	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	279
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	279
FaqI	GGGAC	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	2 cut(s)	201, 204
FokI	GGATG	2 cut(s)	71, 262
Fsp4HI	GCNGC	2 cut(s)	201, 204
GlaI	GCGC	2 cut(s)	213, 337
GluI	GCNGC	2 cut(s)	201, 204
GsaI	CCCAGC	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	102, 330
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	2 cut(s)	214, 338
Hin1I	GRCGYC	1 cut(s)	336
Hin6I	GCGC	2 cut(s)	212, 336
HinP1I	GCGC	2 cut(s)	212, 336
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	4 cut(s)	7, 106, 365, 375
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	3 cut(s)	220, 249, 372
Hpy188III	TCNNGA	2 cut(s)	292, 405
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	2 cut(s)	220, 344
HpyAV	CCTTC	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 209, 323
HpyF3I	CTNAG	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	336
HspAI	GCGC	2 cut(s)	212, 336
KasI	GGCGCC	1 cut(s)	335
LpnPI	CCDG	6 cut(s)	26, 58, 116, 127, 185, 312
Lsp1109I	GCAGC	2 cut(s)	187, 190
MaeIII	GTNAC	1 cut(s)	8
MboII	GAAGA	2 cut(s)	73, 146
MfeI	CAATTG	1 cut(s)	161
MluCI	AATT	4 cut(s)	161, 286, 295, 382
Mly113I	GGCGCC	1 cut(s)	336
MlyI	GAGTC	3 cut(s)	16, 374, 384
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	30, 41, 160, 254, 307, 341
MspI	CCGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	361
MwoI	GCNNNNNNNGC	3 cut(s)	172, 209, 323
NarI	GGCGCC	1 cut(s)	336
NlaIV	GGNNCC	2 cut(s)	17, 337
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	202, 205
PleI	GAGTC	3 cut(s)	15, 373, 383
PluTI	GGCGCC	1 cut(s)	339
PpsI	GAGTC	3 cut(s)	15, 373, 383
PspFI	CCCAGC	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	17, 337
SalI	GTCGAC	1 cut(s)	274
SatI	GCNGC	2 cut(s)	201, 204
SchI	GAGTC	3 cut(s)	16, 374, 384
SetI	ASST	4 cut(s)	81, 265, 349, 402
SfoI	GGCGCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	4 cut(s)	161, 286, 295, 382
SspDI	GGCGCC	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	279
TaqI	TCGA	2 cut(s)	5, 275
TasI	AATT	4 cut(s)	161, 286, 295, 382
TfiI	GAWTC	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	200, 203
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	73
XapI	RAATTY	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.