Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

66130711 .. 66137374

Gene Structure 6664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGTGGAGTCACCGAAACCCTCAAGGCAACACCAATAGGCAAGCCGGAGGAAGCAAGGGTTTTGCCAAAACCCAAAAGGTCTTCGTCCCCAAAAATCAAGGCCAGAATCGTCCAAGAAGCCCTAAATCCCCAAATTCCACTCTCTCTGCCTCTCTTCGGCAATCGCTGTCCCAACCGTCCAATGCCGAAGTTTCAAGTGCTGCTGCTTCTGCGCCGCCGGAGAGTAGTAGTAGTAGTAGTAGGGTTCGGATGGGAGAGAGAGGCGAGTGGGTGTCGACCAAGGGAAATTTTGTGAATTACTTGCCCCAAGATGAGGCGGTTTCCGCTAGCCTAGGCGCCGACGAAGGTGGATTAGATGCCGTGGAGTCTCAGAGAGTCGTCGATCTTCTCAATAGAGAGCTTTCTCGATTGCTCAAGCTAAACCCTAAGGAATTTTGGAAACAAGATGTTTCAAAAAAGAAGAAGAAAAATAAGAGCAAGAAAACGAAATCACAGGCAGAGCATACTGATCCACAATCTTTAAGTGGGCAAACTGATCCACAATCTACAACTAGGCAAACTGCTCCACAATCTACAAGTAGGCAAACTGATCCACCATCCATTCCTCTTATTGATCTGTTCCCACATGGGGAGTTTCCTGAGGGCGAAATTCAACAATACAGAGATGACAACTTGTGGAGGACTACTTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACCATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGGTACGGAAATACATCAGAGGGATTTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACAGTCCGTAAGTTAATATCCAAGAATGGCCTGCAAGCAGGCATTGCATTCCCCACAGGATGCTCTTTGAATTCGGTTGCTGCTCATTGGACCCCAAATACAGGGGACAAGATGGTGCTTCAGTATGATGATGTGATGAAATTAGACTTTAGAACTCATGTTGATGGTCATATAGTTGACTGTGCATTTACAGTAGCATTCAATCCTATGTTTGATCCACTACTTGAAGCCTCACGTGAAGCAACAAATACGGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTCATGGAATCATGTGAGGTTGAAATAAATGGGAAGGTGTATCAAGGCAGTCTGGTGCACAAGGCTCCTGTAAATGGGGCTGCTGGGAAGGTTGAGAATGCTGGTGTTGTCCTGGCAGAGTGGGCGAAGTATGTTCTTAAGTTCAAAGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

436

Amino Acids

48.03

Weight (kDa)

8.99

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	247 - 391	1.3e-18	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	3 cut(s)	215, 317, 324
AclWI	GGATC	4 cut(s)	503, 530, 584, 1049
AcsI	RAATTY	5 cut(s)	133, 286, 431, 648, 910
AcuI	CTGAAG	2 cut(s)	711, 944
AcvI	CACGTG	1 cut(s)	1076
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	5 cut(s)	156, 313, 628, 941, 1226
AflII	CTTAAG	1 cut(s)	1289
AgsI	TTSAA	9 cut(s)	195, 453, 653, 719, 910, 1042, 1067, 1175, 1297
AjnI	CCWGG	3 cut(s)	765, 799, 1263
AjuI	GAANNNNNNNTTGG	2 cut(s)	689, 721
AluBI	AGCT	3 cut(s)	400, 418, 749
AluI	AGCT	3 cut(s)	400, 418, 749
Alw21I	GWGCWC	1 cut(s)	1212
Alw26I	GTCTC	2 cut(s)	372, 821
Alw44I	GTGCAC	1 cut(s)	1208
AlwI	GGATC	4 cut(s)	503, 530, 584, 1049
AoxI	GGCC	2 cut(s)	100, 868
ApaLI	GTGCAC	1 cut(s)	1208
ApeKI	GCWGC	6 cut(s)	200, 203, 749, 920, 1139, 1232
ApoI	RAATTY	5 cut(s)	133, 286, 431, 648, 910
AspA2I	CCTAGG	1 cut(s)	331
AspLEI	GCGC	3 cut(s)	214, 338, 714
AspS9I	GGNCC	1 cut(s)	930
AsuNHI	GCTAGC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	930
AvrII	CCTAGG	1 cut(s)	331
AxyI	CCTNAGG	2 cut(s)	426, 639
BaeGI	GKGCMC	1 cut(s)	1212
BanI	GGYRCC	1 cut(s)	335
BbrPI	CACGTG	1 cut(s)	1076
BbsI	GAAGAC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	1212
BbvI	GCAGC	6 cut(s)	187, 190, 736, 907, 1126, 1219
BccI	CCATC	4 cut(s)	244, 604, 946, 998
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	3 cut(s)	767, 801, 1265
BcoDI	GTCTC	2 cut(s)	372, 821
BfaI	CTAG	3 cut(s)	327, 332, 552
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	2 cut(s)	339, 715
BfrI	CTTAAG	1 cut(s)	1289
BisI	GCNGC	7 cut(s)	201, 204, 215, 750, 921, 1140, 1233
BlnI	CCTAGG	1 cut(s)	331
BlsI	GCNGC	7 cut(s)	202, 205, 216, 751, 922, 1141, 1234
Bme1390I	CCNGG	3 cut(s)	767, 801, 1265
Bme18I	GGWCC	1 cut(s)	930
BmgT120I	GGNCC	1 cut(s)	930
BmiI	GGNNCC	3 cut(s)	337, 932, 1218
BmrFI	CCNGG	3 cut(s)	767, 801, 1265
BmsI	GCATC	2 cut(s)	346, 890
BmtI	GCTAGC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	2 cut(s)	6, 398
BsaAI	YACGTR	1 cut(s)	1076
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	279, 331, 360
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 313, 628, 941, 1226
Bse21I	CCTNAGG	2 cut(s)	426, 639
Bse3DI	GCAATG	1 cut(s)	882
BseBI	CCWGG	3 cut(s)	767, 801, 1265
BseDI	CCNNGG	3 cut(s)	279, 331, 360
BseGI	GGATG	3 cut(s)	255, 596, 905
BseLI	CCNNNNNNNGG	5 cut(s)	156, 313, 628, 941, 1226
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	2 cut(s)	383, 630
BseSI	GKGCMC	1 cut(s)	1212
BseXI	GCAGC	6 cut(s)	187, 190, 736, 907, 1126, 1219
BseYI	CCCAGC	1 cut(s)	1235
BshFI	GGCC	2 cut(s)	102, 870
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	1212
BsiSI	CCGG	2 cut(s)	45, 218
BslFI	GGGAC	3 cut(s)	71, 154, 959
BslI	CCNNNNNNNGG	5 cut(s)	156, 313, 628, 941, 1226
BsmAI	GTCTC	2 cut(s)	372, 821
BsmFI	GGGAC	3 cut(s)	71, 154, 959
BsmI	GAATGC	3 cut(s)	887, 1037, 1255
BsnI	GGCC	2 cut(s)	102, 870
Bsp1286I	GDGCHC	1 cut(s)	1212
Bsp143I	GATC	6 cut(s)	382, 508, 535, 589, 613, 1054
BspACI	CCGC	3 cut(s)	215, 317, 324
BspANI	GGCC	2 cut(s)	102, 870
BspCNI	CTCAG	2 cut(s)	382, 631
BspLI	GGNNCC	3 cut(s)	337, 932, 1218
BspMAI	CTGCAG	1 cut(s)	754
BspOI	GCTAGC	1 cut(s)	330
BspPI	GGATC	4 cut(s)	503, 530, 584, 1049
BspT107I	GGYRCC	1 cut(s)	335
BspTI	CTTAAG	1 cut(s)	1289
BsrDI	GCAATG	1 cut(s)	882
BssECI	CCNNGG	3 cut(s)	279, 331, 360
BssMI	GATC	6 cut(s)	382, 508, 535, 589, 613, 1054
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	2 cut(s)	279, 331
Bst2UI	CCWGG	3 cut(s)	767, 801, 1265
Bst4CI	ACNGT	4 cut(s)	177, 844, 1022, 1033
Bst6I	CTCTTC	3 cut(s)	159, 687, 692
BstACI	GRCGYC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	1289
BstAPI	GCANNNNNTGC	1 cut(s)	884
BstBAI	YACGTR	1 cut(s)	1076
BstC8I	GCNNGC	5 cut(s)	42, 328, 872, 876, 880
BstDEI	CTNAG	3 cut(s)	369, 426, 639
BstDSI	CCRYGG	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	255, 596, 905
BstH2I	RGCGCY	2 cut(s)	339, 715
BstHHI	GCGC	3 cut(s)	214, 338, 714
BstKTI	GATC	6 cut(s)	385, 511, 538, 592, 616, 1057
BstMAI	GTCTC	2 cut(s)	372, 821
BstMBI	GATC	6 cut(s)	382, 508, 535, 589, 613, 1054
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 323, 884, 1274
BstNI	CCWGG	3 cut(s)	767, 801, 1265
BstSCI	CCNGG	3 cut(s)	765, 799, 1263
BstSFI	CTRYAG	1 cut(s)	750
BstSLI	GKGCMC	1 cut(s)	1212
BstV1I	GCAGC	6 cut(s)	187, 190, 736, 907, 1126, 1219
BstV2I	GAAGAC	1 cut(s)	73
Bsu36I	CCTNAGG	2 cut(s)	426, 639
BsuRI	GGCC	2 cut(s)	102, 870
BtgI	CCRYGG	1 cut(s)	360
BtgZI	GCGATG	1 cut(s)	746
BtsCI	GGATG	3 cut(s)	255, 596, 905
Cac8I	GCNNGC	5 cut(s)	42, 328, 872, 876, 880
CfoI	GCGC	3 cut(s)	214, 338, 714
Cfr13I	GGNCC	1 cut(s)	930
CseI	GACGC	1 cut(s)	1109
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	4 cut(s)	626, 998, 1156, 1164
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	3 cut(s)	369, 426, 639
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	6 cut(s)	384, 510, 537, 591, 615, 1056
DpnII	GATC	6 cut(s)	382, 508, 535, 589, 613, 1054
DraI	TTTAAA	1 cut(s)	795
Eam1104I	CTCTTC	3 cut(s)	159, 687, 692
EarI	CTCTTC	3 cut(s)	159, 687, 692
Eco130I	CCWWGG	2 cut(s)	279, 331
Eco47I	GGWCC	1 cut(s)	930
Eco57I	CTGAAG	2 cut(s)	711, 944
Eco72I	CACGTG	1 cut(s)	1076
Eco81I	CCTNAGG	2 cut(s)	426, 639
EcoRI	GAATTC	1 cut(s)	910
EcoRII	CCWGG	3 cut(s)	765, 799, 1263
EcoT14I	CCWWGG	2 cut(s)	279, 331
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	279, 331
FaeI	CATG	4 cut(s)	629, 1001, 1159, 1167
FaqI	GGGAC	3 cut(s)	71, 154, 959
FatI	CATG	4 cut(s)	625, 997, 1155, 1163
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	7 cut(s)	201, 204, 215, 750, 921, 1140, 1233
FokI	GGATG	3 cut(s)	262, 583, 912
Fsp4HI	GCNGC	7 cut(s)	201, 204, 215, 750, 921, 1140, 1233
FspBI	CTAG	3 cut(s)	327, 332, 552
GlaI	GCGC	3 cut(s)	213, 337, 713
GluI	GCNGC	7 cut(s)	201, 204, 215, 750, 921, 1140, 1233
GsaI	CCCAGC	1 cut(s)	1239
HaeII	RGCGCY	2 cut(s)	339, 715
HaeIII	GGCC	2 cut(s)	102, 870
HapII	CCGG	2 cut(s)	45, 218
HgaI	GACGC	1 cut(s)	1109
HhaI	GCGC	3 cut(s)	214, 338, 714
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	4 cut(s)	629, 1001, 1159, 1167
Hin6I	GCGC	3 cut(s)	212, 336, 712
HinP1I	GCGC	3 cut(s)	212, 336, 712
HincII	GTYRAC	2 cut(s)	276, 1018
HindII	GTYRAC	2 cut(s)	276, 1018
HinfI	GANTC	6 cut(s)	7, 106, 365, 375, 1103, 1160
HpaII	CCGG	2 cut(s)	45, 218
Hpy166II	GTNNAC	3 cut(s)	276, 1018, 1210
Hpy188I	TCNGA	4 cut(s)	249, 372, 691, 785
Hpy188III	TCNNGA	3 cut(s)	405, 638, 1107
Hpy8I	GTNNAC	3 cut(s)	276, 1018, 1210
Hpy99I	CGWCG	3 cut(s)	344, 383, 747
HpyAV	CCTTC	3 cut(s)	338, 1180, 1234
HpyCH4III	ACNGT	4 cut(s)	177, 844, 1022, 1033
HpyCH4IV	ACGT	1 cut(s)	1075
HpyCH4V	TGCA	6 cut(s)	752, 874, 887, 1025, 1142, 1210
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 323, 884, 1274
HpyF3I	CTNAG	3 cut(s)	369, 426, 639
HpySE526I	ACGT	1 cut(s)	1075
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	629, 1001, 1159, 1167
HspAI	GCGC	3 cut(s)	212, 336, 712
KasI	GGCGCC	1 cut(s)	335
Kzo9I	GATC	6 cut(s)	382, 508, 535, 589, 613, 1054
LmnI	GCTCC	3 cut(s)	568, 709, 1222
Lsp1109I	GCAGC	6 cut(s)	187, 190, 736, 907, 1126, 1219
LweI	GCATC	2 cut(s)	346, 890
MaeI	CTAG	3 cut(s)	327, 332, 552
MaeII	ACGT	1 cut(s)	1075
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	6 cut(s)	384, 510, 537, 591, 615, 1056
MboI	GATC	6 cut(s)	382, 508, 535, 589, 613, 1054
MboII	GAAGA	7 cut(s)	73, 146, 377, 472, 475, 704, 709
MhlI	GDGCHC	1 cut(s)	1212
MluCI	AATT	9 cut(s)	133, 286, 295, 431, 648, 733, 910, 980, 1110
Mly113I	GGCGCC	1 cut(s)	336
MlyI	GAGTC	4 cut(s)	16, 374, 384, 1112
MmeI	TCCRAC	1 cut(s)	687
MseI	TTAA	4 cut(s)	521, 794, 854, 1290
MslI	CAYNNNNRTG	1 cut(s)	1002
MspCI	CTTAAG	1 cut(s)	1289
MspI	CCGG	2 cut(s)	45, 218
MspR9I	CCNGG	3 cut(s)	767, 801, 1265
Mva1269I	GAATGC	3 cut(s)	887, 1037, 1255
MvaI	CCWGG	3 cut(s)	767, 801, 1265
MwoI	GCNNNNNNNGC	4 cut(s)	209, 323, 884, 1274
NarI	GGCGCC	1 cut(s)	336
NdeII	GATC	6 cut(s)	382, 508, 535, 589, 613, 1054
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	4 cut(s)	629, 1001, 1159, 1167
NlaIV	GGNNCC	3 cut(s)	337, 932, 1218
NmuCI	GTSAC	1 cut(s)	8
PctI	GAATGC	3 cut(s)	887, 1037, 1255
PfeI	GAWTC	2 cut(s)	106, 1160
PkrI	GCNGC	7 cut(s)	202, 205, 216, 751, 922, 1141, 1234
PleI	GAGTC	4 cut(s)	15, 373, 383, 1111
PluTI	GGCGCC	1 cut(s)	339
PmaCI	CACGTG	1 cut(s)	1076
PmlI	CACGTG	1 cut(s)	1076
PpsI	GAGTC	4 cut(s)	15, 373, 383, 1111
Ppu21I	YACGTR	1 cut(s)	1076
Psp6I	CCWGG	3 cut(s)	765, 799, 1263
PspCI	CACGTG	1 cut(s)	1076
PspFI	CCCAGC	1 cut(s)	1235
PspGI	CCWGG	3 cut(s)	765, 799, 1263
PspN4I	GGNNCC	3 cut(s)	337, 932, 1218
PspPI	GGNCC	1 cut(s)	930
PstI	CTGCAG	1 cut(s)	754
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
RseI	CAYNNNNRTG	1 cut(s)	1002
SalI	GTCGAC	1 cut(s)	274
SaqAI	TTAA	4 cut(s)	521, 794, 854, 1290
SatI	GCNGC	7 cut(s)	201, 204, 215, 750, 921, 1140, 1233
Sau3AI	GATC	6 cut(s)	382, 508, 535, 589, 613, 1054
Sau96I	GGNCC	1 cut(s)	930
SchI	GAGTC	4 cut(s)	16, 374, 384, 1112
ScrFI	CCNGG	3 cut(s)	767, 801, 1265
SduI	GDGCHC	1 cut(s)	1212
SfaNI	GCATC	2 cut(s)	346, 890
SfcI	CTRYAG	1 cut(s)	750
SfoI	GGCGCC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	930
SmiMI	CAYNNNNRTG	1 cut(s)	1002
SmlI	CTYRAG	3 cut(s)	21, 413, 1289
SmoI	CTYRAG	3 cut(s)	21, 413, 1289
Sse9I	AATT	9 cut(s)	133, 286, 295, 431, 648, 733, 910, 980, 1110
SsiI	CCGC	3 cut(s)	215, 317, 324
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	3 cut(s)	327, 332, 552
StyD4I	CCNGG	3 cut(s)	765, 799, 1263
StyI	CCWWGG	2 cut(s)	279, 331
TaaI	ACNGT	4 cut(s)	177, 844, 1022, 1033
TaiI	ACGT	1 cut(s)	1078
TaqI	TCGA	4 cut(s)	275, 381, 406, 745
TasI	AATT	9 cut(s)	133, 286, 295, 431, 648, 733, 910, 980, 1110
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	106, 1160
Tru1I	TTAA	4 cut(s)	521, 794, 854, 1290
Tru9I	TTAA	4 cut(s)	521, 794, 854, 1290
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	6 cut(s)	200, 203, 749, 920, 1139, 1232
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	749, 992
TspGWI	ACGGA	2 cut(s)	787, 836
Vha464I	CTTAAG	1 cut(s)	1289
VneI	GTGCAC	1 cut(s)	1208
VpaK11BI	GGWCC	1 cut(s)	930
XapI	RAATTY	5 cut(s)	133, 286, 431, 648, 910
XmaJI	CCTAGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	3 cut(s)	327, 332, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.