Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Forward (+)

89209662 .. 89209820

Gene Structure 159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG563100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGGAGAGAGAGGTGAGTGGGTGTCGACCAAGGGAAATTTCTTGAATTACTTGCCCCAAGATGAGGCAGTTGCCGCTGGCCTCGGCGTCGACGAAGGTGGATTGGACGCCGTGGAGTCTCAGAGAGTCGTCGATTTTCTCAATAGAGAGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

52

Amino Acids

5.64

Weight (kDa)

4.14

Isoelectric Point (pI)

8.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	26, 90
AciI	CCGC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	37
AcyI	GRCGYC	2 cut(s)	87, 108
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	46
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	123
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BsaHI	GRCGYC	2 cut(s)	87, 108
BsaJI	CCNNGG	3 cut(s)	30, 82, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	30, 82, 111
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	30, 82, 111
BssNI	GRCGYC	2 cut(s)	87, 108
BssT1I	CCWWGG	1 cut(s)	30
BstACI	GRCGYC	2 cut(s)	87, 108
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	79
CseI	GACGC	2 cut(s)	76, 116
CviJI	RGCY	2 cut(s)	81, 151
CviKI_1	RGCY	2 cut(s)	81, 151
DdeI	CTNAG	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FblI	GTMKAC	2 cut(s)	26, 90
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	81
HgaI	GACGC	2 cut(s)	76, 116
Hin1I	GRCGYC	2 cut(s)	87, 108
HincII	GTYRAC	2 cut(s)	27, 91
HindII	GTYRAC	2 cut(s)	27, 91
HinfI	GANTC	2 cut(s)	116, 126
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	27, 91
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	43, 156
Hpy8I	GTNNAC	2 cut(s)	27, 91
Hpy99I	CGWCG	3 cut(s)	92, 95, 134
HpyAV	CCTTC	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	120
Hsp92I	GRCGYC	2 cut(s)	87, 108
LpnPI	CCDG	1 cut(s)	63
MluCI	AATT	2 cut(s)	37, 46
MlyI	GAGTC	2 cut(s)	125, 135
MnlI	CCTC	3 cut(s)	5, 58, 92
MspA1I	CMGCKG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	74
NmeAIII	GCCGAG	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	2 cut(s)	124, 134
PpsI	GAGTC	2 cut(s)	124, 134
SalI	GTCGAC	2 cut(s)	25, 89
SatI	GCNGC	1 cut(s)	75
SchI	GAGTC	2 cut(s)	125, 135
SetI	ASST	3 cut(s)	16, 100, 153
SgeI	CNNG	7 cut(s)	43, 55, 64, 71, 90, 95, 124
SgrDI	CGTCGACG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	37, 46
SsiI	CCGC	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	30
TaqI	TCGA	3 cut(s)	26, 90, 132
TasI	AATT	2 cut(s)	37, 46
TauI	GCSGC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	37
XmiI	GTMKAC	2 cut(s)	26, 90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.