Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

38654163 .. 38654627

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG177800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCGAGTCACCGAAACCCTCAAGGCAACACCAATAGGCAAGCCGGAGGAAGCAAGGGTTTCGCCAAAACCCAAAAGGTCTTCGTCCCCAAAAATCAAGGCCAGAATCGTCCCAGAAGCCCTAAATCACCAAATCCCACACTCTCTGCCTCTCTTCGGCAATCGCTGTCCCAGCTATCCAATGCCGAAGTTTCAAGTGCTGCTGCTTCTGCGCTGCCGAAGAGTAGTAGTAGTAGGGTTCGGATGGGAGAGAGAGGCGAGTGGGTGTCGACCAAGGGAAATTTCGTGAATCACTTGCTCCAAGATGAGGCGGTTGCCGCTAGCCTAGGTGCCGACGAAGGTGGATTGGATGCCGTGGAGTCTCAGAGAGTCGTCGATCTTCTCAATAGAGAGCTTTCTCGATTGCTCAAGCTAAACTCTAAGGAATTTTGGAAACAAGGTATTGGTGGATTTGTCTTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

154

Amino Acids

16.52

Weight (kDa)

10.51

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	2 cut(s)	311, 318
AcsI	RAATTY	2 cut(s)	280, 425
AfiI	CCNNNNNNNGG	2 cut(s)	156, 307
AgsI	TTSAA	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	3 cut(s)	175, 394, 412
AluI	AGCT	3 cut(s)	175, 394, 412
Alw26I	GTCTC	1 cut(s)	366
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	200, 203, 214
ApoI	RAATTY	2 cut(s)	280, 425
AspA2I	CCTAGG	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	120
AsuNHI	GCTAGC	1 cut(s)	320
AvrII	CCTAGG	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	187, 190, 201
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	338
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	2 cut(s)	321, 326
BisI	GCNGC	4 cut(s)	201, 204, 215, 318
BlnI	CCTAGG	1 cut(s)	325
BlsI	GCNGC	4 cut(s)	202, 205, 216, 319
BmiI	GGNNCC	1 cut(s)	331
BmsI	GCATC	1 cut(s)	340
BmtI	GCTAGC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	2 cut(s)	6, 392
BsaJI	CCNNGG	3 cut(s)	273, 325, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 307
BseDI	CCNNGG	3 cut(s)	273, 325, 354
BseGI	GGATG	2 cut(s)	249, 355
BseLI	CCNNNNNNNGG	2 cut(s)	156, 307
BseMII	CTCAG	1 cut(s)	377
BseXI	GCAGC	3 cut(s)	187, 190, 201
BseYI	CCCAGC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	3 cut(s)	71, 96, 154
BslI	CCNNNNNNNGG	2 cut(s)	156, 307
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	3 cut(s)	71, 96, 154
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	2 cut(s)	311, 318
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	331
BspOI	GCTAGC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	329
BssECI	CCNNGG	3 cut(s)	273, 325, 354
BssMI	GATC	1 cut(s)	376
BssT1I	CCWWGG	2 cut(s)	273, 325
Bst6I	CTCTTC	2 cut(s)	159, 215
BstC8I	GCNNGC	2 cut(s)	42, 322
BstDEI	CTNAG	2 cut(s)	363, 420
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	249, 355
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 209, 317
BstV1I	GCAGC	3 cut(s)	187, 190, 201
BstV2I	GAAGAC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	249, 355
Cac8I	GCNNGC	2 cut(s)	42, 322
CfoI	GCGC	1 cut(s)	214
CviJI	RGCY	7 cut(s)	44, 102, 120, 175, 324, 394, 412
CviKI_1	RGCY	7 cut(s)	44, 102, 120, 175, 324, 394, 412
DdeI	CTNAG	2 cut(s)	363, 420
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	159, 215
EarI	CTCTTC	2 cut(s)	159, 215
Eco130I	CCWWGG	2 cut(s)	273, 325
EcoT14I	CCWWGG	2 cut(s)	273, 325
ErhI	CCWWGG	2 cut(s)	273, 325
FaiI	YATR	1 cut(s)	463
FaqI	GGGAC	3 cut(s)	71, 96, 154
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	4 cut(s)	201, 204, 215, 318
FokI	GGATG	2 cut(s)	256, 362
Fsp4HI	GCNGC	4 cut(s)	201, 204, 215, 318
FspBI	CTAG	2 cut(s)	321, 326
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	4 cut(s)	201, 204, 215, 318
GsaI	CCCAGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	5 cut(s)	7, 106, 289, 359, 369
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	243, 366
Hpy188III	TCNNGA	2 cut(s)	286, 399
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	2 cut(s)	338, 377
HpyAV	CCTTC	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 209, 317
HpyF3I	CTNAG	2 cut(s)	363, 420
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	4 cut(s)	58, 116, 127, 185
Lsp1109I	GCAGC	3 cut(s)	187, 190, 201
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	2 cut(s)	321, 326
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	4 cut(s)	73, 146, 232, 371
MluCI	AATT	2 cut(s)	280, 425
MlyI	GAGTC	3 cut(s)	16, 368, 378
MnlI	CCTC	5 cut(s)	30, 41, 160, 248, 301
MspI	CCGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	172, 209, 317
NdeII	GATC	1 cut(s)	376
NheI	GCTAGC	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	106, 289
PkrI	GCNGC	4 cut(s)	202, 205, 216, 319
PleI	GAGTC	3 cut(s)	15, 367, 377
PpsI	GAGTC	3 cut(s)	15, 367, 377
PspFI	CCCAGC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	331
SalI	GTCGAC	1 cut(s)	268
SatI	GCNGC	4 cut(s)	201, 204, 215, 318
Sau3AI	GATC	1 cut(s)	376
SchI	GAGTC	3 cut(s)	16, 368, 378
SetI	ASST	7 cut(s)	81, 177, 331, 343, 396, 414, 442
SfaNI	GCATC	1 cut(s)	340
SmlI	CTYRAG	2 cut(s)	21, 407
SmoI	CTYRAG	2 cut(s)	21, 407
Sse9I	AATT	2 cut(s)	280, 425
SsiI	CCGC	2 cut(s)	311, 318
SspMI	CTAG	2 cut(s)	321, 326
StyI	CCWWGG	2 cut(s)	273, 325
TaqI	TCGA	4 cut(s)	5, 269, 375, 400
TasI	AATT	2 cut(s)	280, 425
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	106, 289
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	3 cut(s)	200, 203, 214
Tsp45I	GTSAC	1 cut(s)	8
XapI	RAATTY	2 cut(s)	280, 425
XmaJI	CCTAGG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	2 cut(s)	321, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.