Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

73894460 .. 73896016

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG465200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTGTAGTCACCGAAATGCTCAAGGCAACACCAATAGGCAAGCCAGAGGAAGTAAGGGTTTCGCCAAAACCCAAAAGGTCTTCGTCCCCAAAAATCAAGGCCAGAATCGTCCTAGAAGCCCTAAATCCCCAAATCCCACTCTCTCTACCTCTCTTGGGCAATCGCTGTCCCAGCCGTCCAATGCCGAAGTTTTAAGTGCTGCTGCTTCTGCTCCGCCGGAGAGTAGTAGTAGTAGTAGTAGGGTTCGGATGGGAGAGAGAGGTGAGTGGGTGTCGACCAAGGGAAATTTCGTGAATTACTTACCCCAAGATAAGGCAGTTACCGCTGGCCTCGGCGCTGACGAAGGTGGATTGGACGCAGTGGAGAATTTTGGAAATAAGCTGCTGTTGTTCTTGGTTCACATTATTTTGGGTTGTTTGGATCATCAAGAAGGATTCTTTTTCAAGTTTCGGAATTGGGATAGTGAACCTGATATAATTGATAGTACGGGTGCTGAAACAGGACATGTAATACGCACAACTGTTGGCGGTCGAGGTGGTCAATCTAGACAGGTCGGAAGAAAGACTATTTGTATGGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

194

Amino Acids

20.86

Weight (kDa)

9.51

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	3 cut(s)	215, 324, 528
AclWI	GGATC	1 cut(s)	429
AcsI	RAATTY	3 cut(s)	286, 367, 579
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	2 cut(s)	156, 313
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	1 cut(s)	445
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
AlwI	GGATC	1 cut(s)	429
AoxI	GGCC	2 cut(s)	100, 328
ApeKI	GCWGC	3 cut(s)	200, 203, 382
ApoI	RAATTY	3 cut(s)	286, 367, 579
AspLEI	GCGC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	187, 190, 369
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	114, 546
BfoI	RGCGCY	1 cut(s)	339
BisI	GCNGC	3 cut(s)	201, 204, 383
BlsI	GCNGC	3 cut(s)	202, 205, 384
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	279, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 313
BseDI	CCNNGG	2 cut(s)	279, 331
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	156, 313
BseXI	GCAGC	3 cut(s)	187, 190, 369
BseYI	CCCAGC	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	2 cut(s)	102, 330
BsiEI	CGRYCG	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	71, 154
BslI	CCNNNNNNNGG	2 cut(s)	156, 313
BsmFI	GGGAC	2 cut(s)	71, 154
BsnI	GGCC	2 cut(s)	102, 330
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	3 cut(s)	215, 324, 528
BspANI	GGCC	2 cut(s)	102, 330
BspPI	GGATC	1 cut(s)	429
BssECI	CCNNGG	2 cut(s)	279, 331
BssMI	GATC	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	523
BstC8I	GCNNGC	2 cut(s)	42, 328
BstF5I	GGATG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	1 cut(s)	424
BstMBI	GATC	1 cut(s)	421
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 209, 323
BstNSI	RCATGY	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	187, 190, 369
BstV2I	GAAGAC	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	102, 330
BtsCI	GGATG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	42, 328
CfoI	GCGC	1 cut(s)	338
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	486
CviAII	CATG	1 cut(s)	506
CviJI	RGCY	6 cut(s)	44, 102, 120, 175, 330, 382
CviKI_1	RGCY	6 cut(s)	44, 102, 120, 175, 330, 382
CviQI	GTAC	1 cut(s)	486
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	509
FaiI	YATR	3 cut(s)	476, 507, 575
FaqI	GGGAC	2 cut(s)	71, 154
FatI	CATG	1 cut(s)	505
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	3 cut(s)	201, 204, 383
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	201, 204, 383
FspBI	CTAG	2 cut(s)	114, 546
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	3 cut(s)	201, 204, 383
GsaI	CCCAGC	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	102, 330
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	509
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	2 cut(s)	106, 435
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	3 cut(s)	276, 400, 467
Hpy188I	TCNGA	3 cut(s)	249, 453, 557
Hpy188III	TCNNGA	3 cut(s)	292, 428, 546
Hpy8I	GTNNAC	3 cut(s)	276, 400, 467
HpyAV	CCTTC	2 cut(s)	338, 425
HpyCH4III	ACNGT	1 cut(s)	523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 209, 323
Hsp92II	CATG	1 cut(s)	509
HspAI	GCGC	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	8 cut(s)	58, 116, 185, 231, 312, 483, 486, 536
Lsp1109I	GCAGC	3 cut(s)	187, 190, 369
MaeI	CTAG	2 cut(s)	114, 546
MaeIII	GTNAC	2 cut(s)	8, 319
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	2 cut(s)	73, 570
MluCI	AATT	6 cut(s)	286, 295, 367, 454, 477, 579
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	5 cut(s)	41, 160, 254, 341, 527
MseI	TTAA	2 cut(s)	194, 583
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	172, 209, 323
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	1 cut(s)	509
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	1 cut(s)	509
PciI	ACATGT	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	106, 435
PkrI	GCNGC	3 cut(s)	202, 205, 384
PscI	ACATGT	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	171
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	15
SalI	GTCGAC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	194, 583
SatI	GCNGC	3 cut(s)	201, 204, 383
Sau3AI	GATC	1 cut(s)	421
SetI	ASST	8 cut(s)	81, 152, 265, 349, 384, 472, 538, 555
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	6 cut(s)	286, 295, 367, 454, 477, 579
SsiI	CCGC	3 cut(s)	215, 324, 528
SspMI	CTAG	2 cut(s)	114, 546
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	523
TaqI	TCGA	2 cut(s)	275, 532
TasI	AATT	6 cut(s)	286, 295, 367, 454, 477, 579
TfiI	GAWTC	2 cut(s)	106, 435
Tru1I	TTAA	2 cut(s)	194, 583
Tru9I	TTAA	2 cut(s)	194, 583
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	3 cut(s)	200, 203, 382
Tsp45I	GTSAC	1 cut(s)	8
TspRI	CASTG	1 cut(s)	366
XapI	RAATTY	3 cut(s)	286, 367, 579
XbaI	TCTAGA	1 cut(s)	545
XceI	RCATGY	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	2 cut(s)	114, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.