Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Forward (+)

33803869 .. 33804345

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG153600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCGAGTCACCGAAACCCTCAAGGCAACACCAATAGGCAAGCCGGAGGAAGCAAGGGTTTCGCCAAAACCCAAATGGTCTTCGTCCCCAAAAATCAAGGCCAGAATCATCCCAGAAGCCCTAAATCCCCAAATCCCACGCTCTCTGCCTCTCTTCGGCAATCGCTGTCCCAGCCGTCCAATGCCGAAGTTTCAAGTGCTGCTGCTTCTGCACCGCCGGAGAGTAGTAGTAGTAGTAGTAGTAGTAGGGTTCGGATGGGAGAGAGAGGCGAGTGGGTGTCTACCAAGGGAAATTTCGTGAATCACTTGCCCCAAGATAAGGCGATTGCCGCTAGCCTAGGCGTCGATGAAGGTGGATTGGATGCCGTGGAGTCTCAGAGAGTCGTCGATCTTCTCAATAGAGAGCTTTCTCGATTGCTCAAGCTAAACCCTAAGGAATTTTGGAAACAAGGTATTGGTGGATTTGTCTTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

158

Amino Acids

16.85

Weight (kDa)

10.26

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	281
AciI	CCGC	2 cut(s)	215, 330
AcsI	RAATTY	2 cut(s)	292, 437
AcyI	GRCGYC	1 cut(s)	342
AfiI	CCNNNNNNNGG	2 cut(s)	156, 319
AgsI	TTSAA	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	2 cut(s)	406, 424
AluI	AGCT	2 cut(s)	406, 424
Alw26I	GTCTC	1 cut(s)	378
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	200, 203
ApoI	RAATTY	2 cut(s)	292, 437
AspA2I	CCTAGG	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	332
AvrII	CCTAGG	1 cut(s)	337
AxyI	CCTNAGG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	187, 190
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	2 cut(s)	160, 350
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	2 cut(s)	333, 338
BisI	GCNGC	3 cut(s)	201, 204, 330
BlnI	CCTAGG	1 cut(s)	337
BlsI	GCNGC	3 cut(s)	202, 205, 331
BmsI	GCATC	1 cut(s)	352
BmtI	GCTAGC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	2 cut(s)	6, 404
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	285, 337, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 319
Bse21I	CCTNAGG	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	285, 337, 366
BseGI	GGATG	3 cut(s)	109, 261, 367
BseLI	CCNNNNNNNGG	2 cut(s)	156, 319
BseMII	CTCAG	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	187, 190
BseYI	CCCAGC	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	45, 218
BslFI	GGGAC	2 cut(s)	71, 154
BslI	CCNNNNNNNGG	2 cut(s)	156, 319
BsmAI	GTCTC	1 cut(s)	378
BsmFI	GGGAC	2 cut(s)	71, 154
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	2 cut(s)	215, 330
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	388
BspOI	GCTAGC	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	285, 337, 366
BssMI	GATC	1 cut(s)	388
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	285, 337
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	42, 334
BstDEI	CTNAG	2 cut(s)	375, 432
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	109, 261, 367
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 209, 329
BstV1I	GCAGC	2 cut(s)	187, 190
BstV2I	GAAGAC	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	3 cut(s)	109, 261, 367
Cac8I	GCNNGC	2 cut(s)	42, 334
CseI	GACGC	1 cut(s)	331
CviJI	RGCY	7 cut(s)	44, 102, 120, 175, 336, 406, 424
CviKI_1	RGCY	7 cut(s)	44, 102, 120, 175, 336, 406, 424
DdeI	CTNAG	2 cut(s)	375, 432
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	285, 337
Eco81I	CCTNAGG	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	285, 337
ErhI	CCWWGG	2 cut(s)	285, 337
FaiI	YATR	1 cut(s)	475
FaqI	GGGAC	2 cut(s)	71, 154
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	3 cut(s)	201, 204, 330
FokI	GGATG	3 cut(s)	96, 268, 374
Fsp4HI	GCNGC	3 cut(s)	201, 204, 330
FspBI	CTAG	2 cut(s)	333, 338
GluI	GCNGC	3 cut(s)	201, 204, 330
GsaI	CCCAGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	45, 218
HgaI	GACGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	342
HinfI	GANTC	5 cut(s)	7, 106, 301, 371, 381
HpaII	CCGG	2 cut(s)	45, 218
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	255, 378
Hpy188III	TCNNGA	2 cut(s)	298, 411
Hpy8I	GTNNAC	1 cut(s)	282
Hpy99I	CGWCG	2 cut(s)	347, 389
HpyAV	CCTTC	1 cut(s)	344
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 209, 329
HpyF3I	CTNAG	2 cut(s)	375, 432
Hsp92I	GRCGYC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	388
LpnPI	CCDG	5 cut(s)	58, 116, 127, 185, 231
Lsp1109I	GCAGC	2 cut(s)	187, 190
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	333, 338
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	3 cut(s)	73, 146, 383
MluCI	AATT	2 cut(s)	292, 437
MlyI	GAGTC	3 cut(s)	16, 380, 390
MnlI	CCTC	4 cut(s)	30, 41, 160, 260
MspI	CCGG	2 cut(s)	45, 218
MwoI	GCNNNNNNNGC	3 cut(s)	172, 209, 329
NdeII	GATC	1 cut(s)	388
NheI	GCTAGC	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	106, 301
PkrI	GCNGC	3 cut(s)	202, 205, 331
PleI	GAGTC	3 cut(s)	15, 379, 389
PpsI	GAGTC	3 cut(s)	15, 379, 389
PspFI	CCCAGC	1 cut(s)	171
SatI	GCNGC	3 cut(s)	201, 204, 330
Sau3AI	GATC	1 cut(s)	388
SchI	GAGTC	3 cut(s)	16, 380, 390
SetI	ASST	4 cut(s)	355, 408, 426, 454
SfaNI	GCATC	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	21, 419
SmoI	CTYRAG	2 cut(s)	21, 419
Sse9I	AATT	2 cut(s)	292, 437
SsiI	CCGC	2 cut(s)	215, 330
SspMI	CTAG	2 cut(s)	333, 338
StyI	CCWWGG	2 cut(s)	285, 337
TaqI	TCGA	4 cut(s)	5, 345, 387, 412
TasI	AATT	2 cut(s)	292, 437
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	106, 301
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	200, 203
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	363
XapI	RAATTY	2 cut(s)	292, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmaJI	CCTAGG	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	2 cut(s)	333, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.