Rmu_sc0010679.1_g000001

Activating signal cointegrator 1 complex subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010679.1
Physical Location & Seq
Reverse (-)
666 .. 7971
7306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010679.1_g000001.1.cds

Sequence Viewer

Length: 1494 bp
atgtggagtcaccgaaaccctcaaggcaacaccaataggcaagccggaggaagcaagggtttcgccaaaacccaaaaggtcttcgttcccaaaaatcaaggccagaatcgtcccagaagccctaaatccccaaattccactctctctgcctctcttcggcaattgctgtcccagccgtccaatgccgaagtttcaagtgttgctgcttctgcgccgccggagagtagtagtagcagtagtagggttcggatgggagagagaggcgagtgggtgtcgaccaagggaaattttgtgaattacttgccccaagatgaggcggtttccgctagcctaggtgccaacgaaggtggattagatgccgtggaatctcagagtgtcgtcgatcttctcaatagagagctttctagattgctcaagctaaaccctaaggaattttggaaacaagatgtttcaaaaaagaagaagaaaaataagagcaagaaaaagaaatcacaggcagagcatactgatccacaatctacaactaggcaaactgctccacaatctacaagtaggcaaactgatccaccatccattcctcttattgatctgttcccacatggggagtttcctgagggcgaaattcaacaatacagagatgacaacttgtggaggactacttctgaagagaagagggagttggagcgccttgaaaaaccattatataattcagttcgtcgagctgcagaagttcatcgccaggtatggaaatacatcagagggattttaaagcctggaattcaagcacccagcccctgcagctccgctagcttacccctgctagtctccctctgcagcgctgcatatctgcatatcaccgccggacatggcttcttccgcccaattcaccaccggcagggctccaccgccgaactccgtcagcgacagagcccactccccacaagctcagctaggctacgctgcacggtctcgccctgcagctcacctgtagctccgatggcccagctgctccggtctcgcccaactgcagtctggacaccagctccgctgcaagctcgcagcctcctccgctgcccttcgcagctccgctctgctacactccgctccgctgcaaatcccccgctacgcatggcaccgccgaaccttcgagtctccgccgaactccgaagcaccgccaaccttcgagtctccgccgaacttcgagtgaacaccaagttctgcccagcatccaccgctgagaaccaggtcctccgcccagcattgattcccccgctgcgcttcaccttcgctatgccagcagccatggccagaggatccgttccgcccgacttcgccactcttgagcaccagcggcaaacctccgcccaccaagactccgccgagcaaaggcagctccgcttggcctctctgatagctcgctacaatcctccgctagctcgctgcgctcgttctgaatatatggttggcgttgacctggtcaatgcttcctgttga

Protein Analysis

497

Amino Acids

54.83

Weight (kDa)

10.4

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 335, 1132
AccBSI CCGCTC 2 cut(s) 1089, 1104
AccI GTMKAC 1 cut(s) 275
AclWI GGATC 4 cut(s) 503, 557, 1308, 1321
AcoI YGGCCR 1 cut(s) 1305
AcsI RAATTY 5 cut(s) 133, 286, 431, 621, 777
AcuI CTGAAG 1 cut(s) 684
AfeI AGCGCT 1 cut(s) 838
AfiI CCNNNNNNNGG 5 cut(s) 156, 313, 601, 895, 1386
AgsI TTSAA 5 cut(s) 195, 453, 626, 692, 782
AjnI CCWGG 4 cut(s) 738, 772, 1242, 1473
AjuI GAANNNNNNNTTGG 4 cut(s) 662, 694, 1446, 1478
Alw21I GWGCWC 1 cut(s) 1347
Alw26I GTCTC 5 cut(s) 829, 973, 1020, 1156, 1192
AlwI GGATC 4 cut(s) 503, 557, 1308, 1321
AlwNI CAGNNNCTG 1 cut(s) 795
Aor51HI AGCGCT 1 cut(s) 838
AoxI GGCC 4 cut(s) 100, 999, 1305, 1401
ApoI RAATTY 5 cut(s) 133, 286, 431, 621, 777
AspA2I CCTAGG 1 cut(s) 331
AspLEI GCGC 5 cut(s) 214, 687, 839, 1278, 1445
AspS9I GGNCC 2 cut(s) 1000, 1246
AsuHPI GGTGA 4 cut(s) 847, 878, 975, 1273
AsuNHI GCTAGC 3 cut(s) 326, 806, 1432
AvaII GGWCC 1 cut(s) 1246
AvrII CCTAGG 1 cut(s) 331
AxyI CCTNAGG 2 cut(s) 426, 612
BalI TGGCCA 1 cut(s) 1307
BamHI GGATCC 1 cut(s) 1313
BanI GGYRCC 2 cut(s) 335, 1132
BanII GRGCYC 2 cut(s) 902, 932
BbsI GAAGAC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 1347
BccI CCATC 3 cut(s) 244, 577, 991
BceAI ACGGC 2 cut(s) 160, 344
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 4 cut(s) 740, 774, 1244, 1475
BcoDI GTCTC 5 cut(s) 829, 973, 1020, 1156, 1192
BfaI CTAG 8 cut(s) 327, 332, 405, 525, 807, 821, 951, 1433
BfmI CTRYAG 6 cut(s) 723, 796, 832, 976, 987, 1026
BfoI RGCGCY 2 cut(s) 688, 840
BlnI CCTAGG 1 cut(s) 331
BlpI GCTNAGC 1 cut(s) 946
Bme1390I CCNGG 4 cut(s) 740, 774, 1244, 1475
Bme18I GGWCC 1 cut(s) 1246
BmgT120I GGNCC 2 cut(s) 1000, 1246
BmiI GGNNCC 4 cut(s) 337, 901, 1134, 1315
BmrFI CCNGG 4 cut(s) 740, 774, 1244, 1475
BmsI GCATC 2 cut(s) 346, 1235
BmtI GCTAGC 3 cut(s) 330, 810, 1436
BpiI GAAGAC 1 cut(s) 73
Bpu1102I GCTNAGC 1 cut(s) 946
BpuEI CTTGAG 3 cut(s) 6, 398, 1361
BsaI GGTCTC 2 cut(s) 973, 1020
BsaJI CCNNGG 4 cut(s) 279, 331, 360, 1302
BsaWI WCCGGW 1 cut(s) 1011
BsaXI ACNNNNNCTCC 4 cut(s) 1027, 1057, 1358, 1388
Bsc4I CCNNNNNNNGG 5 cut(s) 156, 313, 601, 895, 1386
Bse118I RCCGGY 1 cut(s) 891
Bse21I CCTNAGG 2 cut(s) 426, 612
BseBI CCWGG 4 cut(s) 740, 774, 1244, 1475
BseDI CCNNGG 4 cut(s) 279, 331, 360, 1302
BseGI GGATG 3 cut(s) 255, 569, 1226
BseLI CCNNNNNNNGG 5 cut(s) 156, 313, 601, 895, 1386
BseMII CTCAG 4 cut(s) 383, 603, 960, 1227
BseRI GAGGAG 1 cut(s) 1055
BseYI CCCAGC 5 cut(s) 171, 788, 1002, 1222, 1255
BsgI GTGCAG 1 cut(s) 946
BshFI GGCC 4 cut(s) 102, 1001, 1307, 1403
BshNI GGYRCC 2 cut(s) 335, 1132
BsiHKAI GWGCWC 1 cut(s) 1347
BsiSI CCGG 5 cut(s) 45, 218, 861, 892, 1012
BslFI GGGAC 2 cut(s) 96, 154
BslI CCNNNNNNNGG 5 cut(s) 156, 313, 601, 895, 1386
BsmAI GTCTC 5 cut(s) 829, 973, 1020, 1156, 1192
BsmFI GGGAC 2 cut(s) 96, 154
BsnI GGCC 4 cut(s) 102, 1001, 1307, 1403
Bso31I GGTCTC 2 cut(s) 973, 1020
Bsp1286I GDGCHC 3 cut(s) 902, 932, 1347
Bsp143I GATC 5 cut(s) 382, 508, 562, 586, 1313
Bsp1720I GCTNAGC 1 cut(s) 946
Bsp19I CCATGG 1 cut(s) 1302
BspANI GGCC 4 cut(s) 102, 1001, 1307, 1403
BspCNI CTCAG 4 cut(s) 382, 604, 959, 1228
BspLI GGNNCC 4 cut(s) 337, 901, 1134, 1315
BspMAI CTGCAG 5 cut(s) 727, 800, 836, 980, 1030
BspOI GCTAGC 3 cut(s) 330, 810, 1436
BspPI GGATC 4 cut(s) 503, 557, 1308, 1321
BspT107I GGYRCC 2 cut(s) 335, 1132
BspTNI GGTCTC 2 cut(s) 973, 1020
BsrBI CCGCTC 2 cut(s) 1089, 1104
BsrFI RCCGGY 1 cut(s) 891
BssAI RCCGGY 1 cut(s) 891
BssECI CCNNGG 4 cut(s) 279, 331, 360, 1302
BssMI GATC 5 cut(s) 382, 508, 562, 586, 1313
BssT1I CCWWGG 3 cut(s) 279, 331, 1302
Bst2UI CCWGG 4 cut(s) 740, 774, 1244, 1475
Bst4CI ACNGT 1 cut(s) 967
Bst6I CTCTTC 3 cut(s) 159, 660, 665
BstC8I GCNNGC 9 cut(s) 42, 328, 808, 1053, 1057, 1296, 1417, 1434, 1438
BstDEI CTNAG 5 cut(s) 369, 426, 612, 946, 1236
BstDSI CCRYGG 2 cut(s) 360, 1302
BstF5I GGATG 3 cut(s) 255, 569, 1226
BstH2I RGCGCY 2 cut(s) 688, 840
BstHHI GCGC 5 cut(s) 214, 687, 839, 1278, 1445
BstKTI GATC 5 cut(s) 385, 511, 565, 589, 1316
BstMAI GTCTC 5 cut(s) 829, 973, 1020, 1156, 1192
BstMBI GATC 5 cut(s) 382, 508, 562, 586, 1313
BstNI CCWGG 4 cut(s) 740, 774, 1244, 1475
BstSCI CCNGG 4 cut(s) 738, 772, 1242, 1473
BstSFI CTRYAG 6 cut(s) 723, 796, 832, 976, 987, 1026
BstV2I GAAGAC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 1313
BstYI RGATCY 1 cut(s) 1313
Bsu36I CCTNAGG 2 cut(s) 426, 612
BsuRI GGCC 4 cut(s) 102, 1001, 1307, 1403
BtgI CCRYGG 2 cut(s) 360, 1302
BtgZI GCGATG 1 cut(s) 719
BtsCI GGATG 3 cut(s) 255, 569, 1226
Cac8I GCNNGC 9 cut(s) 42, 328, 808, 1053, 1057, 1296, 1417, 1434, 1438
CaiI CAGNNNCTG 1 cut(s) 795
CfoI GCGC 5 cut(s) 214, 687, 839, 1278, 1445
Cfr10I RCCGGY 1 cut(s) 891
Cfr13I GGNCC 2 cut(s) 1000, 1246
CsiI ACCWGGT 2 cut(s) 1242, 1473
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 4 cut(s) 599, 866, 1129, 1303
DdeI CTNAG 5 cut(s) 369, 426, 612, 946, 1236
DpnI GATC 5 cut(s) 384, 510, 564, 588, 1315
DpnII GATC 5 cut(s) 382, 508, 562, 586, 1313
DraI TTTAAA 1 cut(s) 768
EaeI YGGCCR 1 cut(s) 1305
Eam1104I CTCTTC 3 cut(s) 159, 660, 665
EarI CTCTTC 3 cut(s) 159, 660, 665
EciI GGCGGA 7 cut(s) 866, 1144, 1180, 1241, 1311, 1351, 1366
Eco130I CCWWGG 3 cut(s) 279, 331, 1302
Eco24I GRGCYC 2 cut(s) 902, 932
Eco31I GGTCTC 2 cut(s) 973, 1020
Eco47I GGWCC 1 cut(s) 1246
Eco47III AGCGCT 1 cut(s) 838
Eco57I CTGAAG 1 cut(s) 684
Eco81I CCTNAGG 2 cut(s) 426, 612
EcoO109I RGGNCCY 1 cut(s) 1246
EcoRI GAATTC 1 cut(s) 777
EcoRII CCWGG 4 cut(s) 738, 772, 1242, 1473
EcoT14I CCWWGG 3 cut(s) 279, 331, 1302
EcoT38I GRGCYC 2 cut(s) 902, 932
ErhI CCWWGG 3 cut(s) 279, 331, 1302
FaeI CATG 4 cut(s) 602, 869, 1132, 1306
FaqI GGGAC 2 cut(s) 96, 154
FatI CATG 4 cut(s) 598, 865, 1128, 1302
FauI CCCGC 2 cut(s) 1128, 1278
FblI GTMKAC 1 cut(s) 275
FokI GGATG 3 cut(s) 262, 556, 1213
FriOI GRGCYC 2 cut(s) 902, 932
FspBI CTAG 8 cut(s) 327, 332, 405, 525, 807, 821, 951, 1433
GlaI GCGC 5 cut(s) 213, 686, 838, 1277, 1444
GsaI CCCAGC 5 cut(s) 175, 792, 1006, 1226, 1259
HaeII RGCGCY 2 cut(s) 688, 840
HaeIII GGCC 4 cut(s) 102, 1001, 1307, 1403
HapII CCGG 5 cut(s) 45, 218, 861, 892, 1012
HhaI GCGC 5 cut(s) 214, 687, 839, 1278, 1445
Hin1II CATG 4 cut(s) 602, 869, 1132, 1306
Hin6I GCGC 5 cut(s) 212, 685, 837, 1276, 1443
HinP1I GCGC 5 cut(s) 212, 685, 837, 1276, 1443
HincII GTYRAC 2 cut(s) 276, 1471
HindII GTYRAC 2 cut(s) 276, 1471
HinfI GANTC 7 cut(s) 7, 106, 365, 1149, 1185, 1264, 1373
HpaII CCGG 5 cut(s) 45, 218, 861, 892, 1012
HphI GGTGA 4 cut(s) 847, 878, 975, 1273
Hpy166II GTNNAC 3 cut(s) 276, 1207, 1471
Hpy188I TCNGA 8 cut(s) 249, 372, 664, 758, 996, 1166, 1410, 1453
Hpy188III TCNNGA 4 cut(s) 405, 611, 1033, 1340
Hpy8I GTNNAC 3 cut(s) 276, 1207, 1471
Hpy99I CGWCG 2 cut(s) 383, 720
HpyAV CCTTC 5 cut(s) 338, 1086, 1154, 1190, 1294
HpyCH4III ACNGT 1 cut(s) 967
HpyF3I CTNAG 5 cut(s) 369, 426, 612, 946, 1236
Hsp92II CATG 4 cut(s) 602, 869, 1132, 1306
HspAI GCGC 5 cut(s) 212, 685, 837, 1276, 1443
Kzo9I GATC 5 cut(s) 382, 508, 562, 586, 1313
LweI GCATC 2 cut(s) 346, 1235
MabI ACCWGGT 2 cut(s) 1242, 1473
MaeI CTAG 8 cut(s) 327, 332, 405, 525, 807, 821, 951, 1433
MaeIII GTNAC 1 cut(s) 8
MalI GATC 5 cut(s) 384, 510, 564, 588, 1315
MbiI CCGCTC 2 cut(s) 1089, 1104
MboI GATC 5 cut(s) 382, 508, 562, 586, 1313
MboII GAAGA 8 cut(s) 73, 146, 377, 472, 475, 677, 682, 865
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 1 cut(s) 1313
MhlI GDGCHC 3 cut(s) 902, 932, 1347
MlsI TGGCCA 1 cut(s) 1307
MluCI AATT 9 cut(s) 133, 161, 286, 295, 431, 621, 706, 777, 882
MluNI TGGCCA 1 cut(s) 1307
MlyI GAGTC 4 cut(s) 16, 1158, 1194, 1367
MmeI TCCRAC 1 cut(s) 660
Mox20I TGGCCA 1 cut(s) 1307
MscI TGGCCA 1 cut(s) 1307
MseI TTAA 1 cut(s) 767
Msp20I TGGCCA 1 cut(s) 1307
MspA1I CMGCKG 7 cut(s) 1006, 1048, 1071, 1109, 1235, 1273, 1351
MspI CCGG 5 cut(s) 45, 218, 861, 892, 1012
MspR9I CCNGG 4 cut(s) 740, 774, 1244, 1475
MunI CAATTG 1 cut(s) 161
MvaI CCWGG 4 cut(s) 740, 774, 1244, 1475
NcoI CCATGG 1 cut(s) 1302
NdeII GATC 5 cut(s) 382, 508, 562, 586, 1313
NheI GCTAGC 3 cut(s) 326, 806, 1432
NlaIII CATG 4 cut(s) 602, 869, 1132, 1306
NlaIV GGNNCC 4 cut(s) 337, 901, 1134, 1315
NmeAIII GCCGAG 1 cut(s) 1405
NmuCI GTSAC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 1444
PfeI GAWTC 3 cut(s) 106, 365, 1264
PflFI GACNNNGTC 1 cut(s) 1475
PleI GAGTC 4 cut(s) 15, 1157, 1193, 1367
PpsI GAGTC 4 cut(s) 15, 1157, 1193, 1367
PpuMI RGGWCCY 1 cut(s) 1246
Psp5II RGGWCCY 1 cut(s) 1246
Psp6I CCWGG 4 cut(s) 738, 772, 1242, 1473
PspFI CCCAGC 5 cut(s) 171, 788, 1002, 1222, 1255
PspGI CCWGG 4 cut(s) 738, 772, 1242, 1473
PspN4I GGNNCC 4 cut(s) 337, 901, 1134, 1315
PspPI GGNCC 2 cut(s) 1000, 1246
PspPPI RGGWCCY 1 cut(s) 1246
PstI CTGCAG 5 cut(s) 727, 800, 836, 980, 1030
PstNI CAGNNNCTG 1 cut(s) 795
PsuI RGATCY 1 cut(s) 1313
PsyI GACNNNGTC 1 cut(s) 1475
PvuII CAGCTG 1 cut(s) 1006
SalI GTCGAC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 767
Sau3AI GATC 5 cut(s) 382, 508, 562, 586, 1313
Sau96I GGNCC 2 cut(s) 1000, 1246
SchI GAGTC 4 cut(s) 16, 1158, 1194, 1367
ScrFI CCNGG 4 cut(s) 740, 774, 1244, 1475
SduI GDGCHC 3 cut(s) 902, 932, 1347
SexAI ACCWGGT 2 cut(s) 1242, 1473
SfaNI GCATC 2 cut(s) 346, 1235
SfcI CTRYAG 6 cut(s) 723, 796, 832, 976, 987, 1026
SinI GGWCC 1 cut(s) 1246
SmlI CTYRAG 3 cut(s) 21, 413, 1340
SmoI CTYRAG 3 cut(s) 21, 413, 1340
Sse9I AATT 9 cut(s) 133, 161, 286, 295, 431, 621, 706, 777, 882
SspMI CTAG 8 cut(s) 327, 332, 405, 525, 807, 821, 951, 1433
StyD4I CCNGG 4 cut(s) 738, 772, 1242, 1473
StyI CCWWGG 3 cut(s) 279, 331, 1302
TaaI ACNGT 1 cut(s) 967
TaqI TCGA 6 cut(s) 275, 381, 718, 1147, 1183, 1201
TasI AATT 9 cut(s) 133, 161, 286, 295, 431, 621, 706, 777, 882
TauI GCSGC 2 cut(s) 217, 1354
TfiI GAWTC 3 cut(s) 106, 365, 1264
Tru1I TTAA 1 cut(s) 767
Tru9I TTAA 1 cut(s) 767
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 722
TspGWI ACGGA 2 cut(s) 905, 1306
Tth111I GACNNNGTC 1 cut(s) 1475
VpaK11BI GGWCC 1 cut(s) 1246
XapI RAATTY 5 cut(s) 133, 286, 431, 621, 777
XbaI TCTAGA 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 1029
XmaJI CCTAGG 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 275
XspI CTAG 8 cut(s) 327, 332, 405, 525, 807, 821, 951, 1433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.