Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

59591942 .. 59598704

Gene Structure 6763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGAGAGAGAGGTGAGTGGGTGTCGACCAAAGGAAATTTTGTGAATTACTTGCCCCAAGATGAGGCAGTTGCCGCTGGCCTCGGCGCCAACGAAGGTGGATTGGACGCCGCGGAGTCTCAGAGAGATAGTGAACCTGATATAATTGATGGTGCGGGTGCTGAAACAGGACATGTAATACACACAATTGTTGGCGGTCGAGGTGGTCAATCTAGACAGGTCGGAAGAAAGACTATTTGTATGGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

83

Amino Acids

8.64

Weight (kDa)

4.66

Isoelectric Point (pI)

30.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	26
AccII	CGCG	1 cut(s)	113
AciI	CCGC	5 cut(s)	75, 111, 113, 155, 195
AcsI	RAATTY	2 cut(s)	37, 246
AcyI	GRCGYC	2 cut(s)	87, 108
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	79
ApoI	RAATTY	2 cut(s)	37, 246
AspLEI	GCGC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	86
BccI	CCATC	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	2 cut(s)	75, 111
BlsI	GCNGC	2 cut(s)	76, 112
BmiI	GGNNCC	1 cut(s)	88
BsaHI	GRCGYC	2 cut(s)	87, 108
BsaJI	CCNNGG	2 cut(s)	82, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	82, 111
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	81
BspACI	CCGC	5 cut(s)	75, 111, 113, 155, 195
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	82, 111
BssNI	GRCGYC	2 cut(s)	87, 108
BstACI	GRCGYC	2 cut(s)	87, 108
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	123
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	176
BstUI	CGCG	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	1 cut(s)	89
Cfr42I	CCGCGG	1 cut(s)	114
CseI	GACGC	1 cut(s)	116
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	1 cut(s)	81
CviKI_1	RGCY	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	120
DinI	GGCGCC	1 cut(s)	88
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
FaeI	CATG	1 cut(s)	176
FaiI	YATR	3 cut(s)	143, 174, 242
FatI	CATG	1 cut(s)	172
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	75, 111
Fsp4HI	GCNGC	2 cut(s)	75, 111
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	2 cut(s)	75, 111
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	81
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	2 cut(s)	87, 108
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	27, 134
Hpy188I	TCNGA	2 cut(s)	123, 224
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	2 cut(s)	27, 134
HpyAV	CCTTC	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	120
Hsp92I	GRCGYC	2 cut(s)	87, 108
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
KspI	CCGCGG	1 cut(s)	114
LpnPI	CCDG	4 cut(s)	63, 150, 153, 203
MaeI	CTAG	1 cut(s)	213
MboII	GAAGA	1 cut(s)	237
MfeI	CAATTG	1 cut(s)	186
MluCI	AATT	5 cut(s)	37, 46, 144, 186, 246
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	5, 58, 92, 194
MseI	TTAA	1 cut(s)	250
MspA1I	CMGCKG	2 cut(s)	77, 113
MunI	CAATTG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	74
NarI	GGCGCC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	88
NmeAIII	GCCGAG	1 cut(s)	63
NspI	RCATGY	1 cut(s)	176
PciI	ACATGT	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	76, 112
PleI	GAGTC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	124
PscI	ACATGT	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	88
SacII	CCGCGG	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	250
SatI	GCNGC	2 cut(s)	75, 111
SchI	GAGTC	1 cut(s)	125
SetI	ASST	5 cut(s)	16, 100, 139, 205, 222
SfoI	GGCGCC	1 cut(s)	88
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
Sse9I	AATT	5 cut(s)	37, 46, 144, 186, 246
SsiI	CCGC	5 cut(s)	75, 111, 113, 155, 195
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	213
TaqI	TCGA	2 cut(s)	26, 199
TasI	AATT	5 cut(s)	37, 46, 144, 186, 246
TauI	GCSGC	2 cut(s)	77, 113
Tru1I	TTAA	1 cut(s)	250
Tru9I	TTAA	1 cut(s)	250
XapI	RAATTY	2 cut(s)	37, 246
XbaI	TCTAGA	1 cut(s)	212
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	26
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.