Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

40120241 .. 40121274

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034291

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCTGAAGCTTCAAGCGCCGCTGGAGAGTAGTAGTAGTAGTATGGTTCAGATGGGAGAGAGAGGCGAGTGGGTGTCGACCAAGGGAAATTTCGTGAATTACTTGCCCCAAGATGAGGCAGTTGCGGCTGGCCTCGGCGCCGACGAAGGTGGATTGGACGTCGTGGAGTCTCAGAGAGTCGTCAATCTTCTCAATAGAGAGCTTTCTCGATTGCTCAAGCTAAACCTAAGGAATTTTGGAAACAAGTGTGTTGGTCTTTTCCCTTTACTTCTCAATGAAATGCTTGTATTGGCAGGCTTCACTAGCCAAAAAACATTTGAGATGCATTTTGATTTTGACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

115

Amino Acids

12.67

Weight (kDa)

4.89

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	77
AciI	CCGC	2 cut(s)	20, 125
AcsI	RAATTY	2 cut(s)	88, 232
AcuI	CTGAAG	1 cut(s)	26
AcyI	GRCGYC	2 cut(s)	138, 159
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	3 cut(s)	10, 202, 220
AluI	AGCT	3 cut(s)	10, 202, 220
Alw26I	GTCTC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	88, 232
AspLEI	GCGC	2 cut(s)	19, 140
AxyI	CCTNAGG	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	137
BccI	CCATC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	303
BfoI	RGCGCY	2 cut(s)	20, 141
BisI	GCNGC	2 cut(s)	20, 126
BlsI	GCNGC	2 cut(s)	21, 127
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	200
BsaHI	GRCGYC	2 cut(s)	138, 159
BsaJI	CCNNGG	2 cut(s)	81, 133
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	81, 133
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	132
BspACI	CCGC	2 cut(s)	20, 125
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	81, 133
BssNI	GRCGYC	2 cut(s)	138, 159
BssT1I	CCWWGG	1 cut(s)	81
BstACI	GRCGYC	2 cut(s)	138, 159
BstC8I	GCNNGC	2 cut(s)	130, 295
BstDEI	CTNAG	2 cut(s)	171, 227
BstH2I	RGCGCY	2 cut(s)	20, 141
BstHHI	GCGC	2 cut(s)	19, 140
BstMAI	GTCTC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 125, 303
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	130, 295
CfoI	GCGC	2 cut(s)	19, 140
CviJI	RGCY	7 cut(s)	10, 128, 132, 202, 220, 297, 306
CviKI_1	RGCY	7 cut(s)	10, 128, 132, 202, 220, 297, 306
DdeI	CTNAG	2 cut(s)	171, 227
DinI	GGCGCC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	327
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	81
FaiI	YATR	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	20, 126
Fsp4HI	GCNGC	2 cut(s)	20, 126
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	2 cut(s)	18, 139
GluI	GCNGC	2 cut(s)	20, 126
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	2 cut(s)	20, 141
HaeIII	GGCC	1 cut(s)	132
HhaI	GCGC	2 cut(s)	19, 140
Hin1I	GRCGYC	2 cut(s)	138, 159
Hin6I	GCGC	2 cut(s)	17, 138
HinP1I	GCGC	2 cut(s)	17, 138
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	167, 177
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	2 cut(s)	51, 174
Hpy188III	TCNNGA	2 cut(s)	94, 207
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	2 cut(s)	146, 164
HpyAV	CCTTC	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 125, 303
HpyF3I	CTNAG	2 cut(s)	171, 227
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	2 cut(s)	138, 159
HspAI	GCGC	2 cut(s)	17, 138
KasI	GGCGCC	1 cut(s)	137
LpnPI	CCDG	3 cut(s)	8, 114, 279
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	159
MboII	GAAGA	1 cut(s)	179
MluCI	AATT	3 cut(s)	88, 97, 232
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	2 cut(s)	176, 186
MnlI	CCTC	3 cut(s)	56, 109, 143
Mph1103I	ATGCAT	1 cut(s)	327
MseI	TTAA	1 cut(s)	343
MspA1I	CMGCKG	1 cut(s)	22
MwoI	GCNNNNNNNGC	3 cut(s)	16, 125, 303
NarI	GGCGCC	1 cut(s)	138
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	21, 127
PleI	GAGTC	2 cut(s)	175, 185
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	2 cut(s)	175, 185
PspN4I	GGNNCC	1 cut(s)	139
SalI	GTCGAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	2 cut(s)	20, 126
SchI	GAGTC	2 cut(s)	176, 186
SetI	ASST	6 cut(s)	12, 151, 162, 204, 222, 228
SfaNI	GCATC	1 cut(s)	312
SfoI	GGCGCC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	88, 97, 232
SsiI	CCGC	2 cut(s)	20, 125
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	77, 208
TasI	AATT	3 cut(s)	88, 97, 232
TauI	GCSGC	2 cut(s)	22, 128
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	291
XapI	RAATTY	2 cut(s)	88, 232
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	303
ZraI	GACGTC	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.