Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Forward (+)

45239963 .. 45240403

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG276300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCGAGTCACCGAAACCCTCAAGGCAACACCAATAGGCAAGCCGGAGGAAGCAAGGGTTTCACCAAAACCCAAAAGGTCTTCGTCCCCAAAAATCAAGGCCAGAATCGTCCCAGAAGCCCTAAATCCCCAAATTCCACGCTCTCTGCCTCTCTTTGGCAATCGCTGTCCCAGCTGTCCAATGCCGAAGTTTCAAGTGCTGCTACTTCTACGCCGCCGGAGAGTAGTAGTAGTAGTAGTAGTAGGGTTTGGATGGGAGAGAGAGGCAAGTGGGTGTCGACCAAGGGAAATTTCGTGAATTACTTGCCCCAAGATGAGGCGGTTTCCACTAGCCTAGGCGCCGACGAAGGTGGATTGGATGTTGTGGAATCTCAGAGAGTTGTCGATCTTCTCAATAGAGAGCTTTCTCGATTGCTCAAGCTAAACCCTAAGGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

146

Amino Acids

15.82

Weight (kDa)

9.99

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	2 cut(s)	215, 320
AcsI	RAATTY	3 cut(s)	133, 289, 434
AcyI	GRCGYC	1 cut(s)	339
AfiI	CCNNNNNNNGG	2 cut(s)	156, 316
AgsI	TTSAA	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	3 cut(s)	175, 403, 421
AluI	AGCT	3 cut(s)	175, 403, 421
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	3 cut(s)	133, 289, 434
AspA2I	CCTAGG	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	55
AvrII	CCTAGG	1 cut(s)	334
AxyI	CCTNAGG	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	247
BfaI	CTAG	2 cut(s)	330, 335
BfoI	RGCGCY	1 cut(s)	342
BisI	GCNGC	2 cut(s)	201, 215
BlnI	CCTAGG	1 cut(s)	334
BlsI	GCNGC	2 cut(s)	202, 216
BmiI	GGNNCC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	2 cut(s)	6, 401
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	282, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 316
Bse21I	CCTNAGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	282, 334
BseGI	GGATG	2 cut(s)	258, 364
BseLI	CCNNNNNNNGG	2 cut(s)	156, 316
BseMII	CTCAG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	45, 218
BslFI	GGGAC	3 cut(s)	71, 96, 154
BslI	CCNNNNNNNGG	2 cut(s)	156, 316
BsmFI	GGGAC	3 cut(s)	71, 96, 154
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	2 cut(s)	215, 320
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	338
BssECI	CCNNGG	2 cut(s)	282, 334
BssMI	GATC	1 cut(s)	385
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	282, 334
BstACI	GRCGYC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	372, 429
BstF5I	GGATG	2 cut(s)	258, 364
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	258, 364
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	341
CviJI	RGCY	7 cut(s)	44, 102, 120, 175, 333, 403, 421
CviKI_1	RGCY	7 cut(s)	44, 102, 120, 175, 333, 403, 421
DdeI	CTNAG	2 cut(s)	372, 429
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	282, 334
Eco81I	CCTNAGG	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	282, 334
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	2 cut(s)	282, 334
FaqI	GGGAC	3 cut(s)	71, 96, 154
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	2 cut(s)	201, 215
FokI	GGATG	2 cut(s)	265, 371
Fsp4HI	GCNGC	2 cut(s)	201, 215
FspBI	CTAG	2 cut(s)	330, 335
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	2 cut(s)	201, 215
GsaI	CCCAGC	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	45, 218
HhaI	GCGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	339
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	3 cut(s)	7, 106, 368
HpaII	CCGG	2 cut(s)	45, 218
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	2 cut(s)	295, 408
Hpy8I	GTNNAC	1 cut(s)	279
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	2 cut(s)	372, 429
Hsp92I	GRCGYC	1 cut(s)	339
HspAI	GCGC	1 cut(s)	339
KasI	GGCGCC	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	385
LpnPI	CCDG	5 cut(s)	58, 116, 127, 185, 231
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	330, 335
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	2 cut(s)	73, 380
MluCI	AATT	4 cut(s)	133, 289, 298, 434
Mly113I	GGCGCC	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	5 cut(s)	30, 41, 160, 257, 310
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	2 cut(s)	45, 218
MwoI	GCNNNNNNNGC	1 cut(s)	172
NarI	GGCGCC	1 cut(s)	339
NdeII	GATC	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	106, 368
PkrI	GCNGC	2 cut(s)	202, 216
PleI	GAGTC	1 cut(s)	15
PluTI	GGCGCC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	175
SalI	GTCGAC	1 cut(s)	277
SatI	GCNGC	2 cut(s)	201, 215
Sau3AI	GATC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	16
SetI	ASST	5 cut(s)	81, 177, 352, 405, 423
SfoI	GGCGCC	1 cut(s)	340
SmlI	CTYRAG	2 cut(s)	21, 416
SmoI	CTYRAG	2 cut(s)	21, 416
Sse9I	AATT	4 cut(s)	133, 289, 298, 434
SsiI	CCGC	2 cut(s)	215, 320
SspDI	GGCGCC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	330, 335
StyI	CCWWGG	2 cut(s)	282, 334
TaqI	TCGA	4 cut(s)	5, 278, 384, 409
TasI	AATT	4 cut(s)	133, 289, 298, 434
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	106, 368
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	8
XapI	RAATTY	3 cut(s)	133, 289, 434
XmaJI	CCTAGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	2 cut(s)	330, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.