Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004336.1

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Forward (+)

149538 .. 155223

Gene Structure 5686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004336.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgtggagtcaccgaaaccctcaaggcagcaccaataggcaagccggaggaagcaagggtttcgccaaaacccaaaaggtctttgtcccaaaaaatcaaggccagaatcgtcccagaagccctaaatccccaaattccactctctctagctctcttcggcaatcgctgtcccagccatccaatgccgaagtttcaagtgctgctgcttctgcgctgccggagagtagtagtagtagtagtagggttcggatgggagagagaggcgagtgggtgtcgaccaagggaagttttgtgaattacttgccccaagatgaggcggtttccgctagccttggcgccaatgaaggtggattagatgacatggagtctcagagagtcgtcgatcttctcaatagagagctttctcgattgctcaagcaaaatcctaaggaattttggaaacaagatgtttcaaaaaagaagaagaaaaataagagcaagaaaaagaaatcacaggcagagcatactgatccacaatctacaactaggcaaactgctccacaatctacaactaggcaaactgatccaccatccattcctcttattgatctgttcccacatggggagtttcctgagggcgaaattcaacaatacagagatgacaacttgtggaggactacttctgaagagaagagggagttggagcgccttgaaaaaccattatataattcagttcgtcgagctgcagaagttcatcgccaggtacggaaatacatcagagggattttaaagcctggaatgttgatgactgatttgtgtgagactttggagaacacagtccgtaagttaatatccgagaatggcctggaagcaggcattgcattccccacaggatgctctttgaattgggttgctgctcattggaccccaaatacaggggacaagatggtgcttcagtatgatgatgtgatgaaattagactttggaactcatgttgatggtcatatagttgattgtgcatttacagtagcattcaatcctatgtttgatccactacttgaagcctcacgtgaagcaacaaatacgggtatcaaggagtctggaattgatgtgcgtctttgtgttgttggtgctgcaatccaagaagtcatggaatcatatgaggttgaaataaatgggaaggtatatcaaggtaattttcctaatgatatgagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

398

Amino Acids

44.44

Weight (kDa)

8.7

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	2 cut(s)	317, 324
AclWI	GGATC	3 cut(s)	503, 557, 1022
AcsI	RAATTY	3 cut(s)	133, 431, 621
AcuI	CTGAAG	2 cut(s)	684, 917
AcvI	CACGTG	1 cut(s)	1049
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	744
AfiI	CCNNNNNNNGG	3 cut(s)	313, 601, 914
AgsI	TTSAA	8 cut(s)	195, 453, 626, 692, 883, 1015, 1040, 1148
AhdI	GACNNNNNGTC	1 cut(s)	364
AjnI	CCWGG	3 cut(s)	738, 772, 843
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AluBI	AGCT	3 cut(s)	150, 400, 722
AluI	AGCT	3 cut(s)	150, 400, 722
Alw26I	GTCTC	2 cut(s)	372, 794
AlwI	GGATC	3 cut(s)	503, 557, 1022
AoxI	GGCC	2 cut(s)	100, 841
ApeKI	GCWGC	7 cut(s)	27, 200, 203, 214, 722, 893, 1112
ApoI	RAATTY	3 cut(s)	133, 431, 621
AspLEI	GCGC	3 cut(s)	214, 338, 687
AspS9I	GGNCC	1 cut(s)	903
AsuNHI	GCTAGC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	903
AxyI	CCTNAGG	2 cut(s)	426, 612
BanI	GGYRCC	1 cut(s)	335
BbrPI	CACGTG	1 cut(s)	1049
BbvI	GCAGC	7 cut(s)	39, 187, 190, 201, 709, 880, 1099
BccI	CCATC	5 cut(s)	184, 244, 577, 919, 971
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	3 cut(s)	740, 774, 845
BcoDI	GTCTC	2 cut(s)	372, 794
BfaI	CTAG	4 cut(s)	147, 327, 525, 552
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	2 cut(s)	339, 688
BisI	GCNGC	7 cut(s)	28, 201, 204, 215, 723, 894, 1113
BlsI	GCNGC	7 cut(s)	29, 202, 205, 216, 724, 895, 1114
Bme1390I	CCNGG	3 cut(s)	740, 774, 845
Bme18I	GGWCC	1 cut(s)	903
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	903
BmiI	GGNNCC	2 cut(s)	337, 905
BmrFI	CCNGG	3 cut(s)	740, 774, 845
BmsI	GCATC	1 cut(s)	863
BmtI	GCTAGC	1 cut(s)	330
BpuEI	CTTGAG	2 cut(s)	6, 398
BsaAI	YACGTR	1 cut(s)	1049
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	279, 331
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 601, 914
Bse21I	CCTNAGG	2 cut(s)	426, 612
Bse3DI	GCAATG	1 cut(s)	855
BseBI	CCWGG	3 cut(s)	740, 774, 845
BseDI	CCNNGG	2 cut(s)	279, 331
BseGI	GGATG	4 cut(s)	176, 255, 569, 878
BseLI	CCNNNNNNNGG	3 cut(s)	313, 601, 914
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	2 cut(s)	383, 603
BseXI	GCAGC	7 cut(s)	39, 187, 190, 201, 709, 880, 1099
BseYI	CCCAGC	1 cut(s)	171
BshFI	GGCC	2 cut(s)	102, 843
BshNI	GGYRCC	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	45, 218
BslFI	GGGAC	4 cut(s)	71, 96, 154, 932
BslI	CCNNNNNNNGG	3 cut(s)	313, 601, 914
BsmAI	GTCTC	2 cut(s)	372, 794
BsmFI	GGGAC	4 cut(s)	71, 96, 154, 932
BsmI	GAATGC	2 cut(s)	860, 1010
BsnI	GGCC	2 cut(s)	102, 843
Bsp143I	GATC	5 cut(s)	382, 508, 562, 586, 1027
BspACI	CCGC	2 cut(s)	317, 324
BspANI	GGCC	2 cut(s)	102, 843
BspCNI	CTCAG	2 cut(s)	382, 604
BspLI	GGNNCC	2 cut(s)	337, 905
BspMAI	CTGCAG	1 cut(s)	727
BspOI	GCTAGC	1 cut(s)	330
BspPI	GGATC	3 cut(s)	503, 557, 1022
BspT107I	GGYRCC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	855
BssECI	CCNNGG	2 cut(s)	279, 331
BssMI	GATC	5 cut(s)	382, 508, 562, 586, 1027
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	2 cut(s)	279, 331
Bst2UI	CCWGG	3 cut(s)	740, 774, 845
Bst4CI	ACNGT	2 cut(s)	817, 1006
Bst6I	CTCTTC	3 cut(s)	159, 660, 665
BstACI	GRCGYC	1 cut(s)	336
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstBAI	YACGTR	1 cut(s)	1049
BstC8I	GCNNGC	3 cut(s)	42, 328, 853
BstDEI	CTNAG	3 cut(s)	369, 426, 612
BstF5I	GGATG	4 cut(s)	176, 255, 569, 878
BstH2I	RGCGCY	2 cut(s)	339, 688
BstHHI	GCGC	3 cut(s)	214, 338, 687
BstKTI	GATC	5 cut(s)	385, 511, 565, 589, 1030
BstMAI	GTCTC	2 cut(s)	372, 794
BstMBI	GATC	5 cut(s)	382, 508, 562, 586, 1027
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 209, 323, 857
BstNI	CCWGG	3 cut(s)	740, 774, 845
BstSCI	CCNGG	3 cut(s)	738, 772, 843
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	7 cut(s)	39, 187, 190, 201, 709, 880, 1099
Bsu36I	CCTNAGG	2 cut(s)	426, 612
BsuRI	GGCC	2 cut(s)	102, 843
BtgZI	GCGATG	1 cut(s)	719
BtsCI	GGATG	4 cut(s)	176, 255, 569, 878
Cac8I	GCNNGC	3 cut(s)	42, 328, 853
CfoI	GCGC	3 cut(s)	214, 338, 687
Cfr13I	GGNCC	1 cut(s)	903
CseI	GACGC	1 cut(s)	1082
Csp6I	GTAC	1 cut(s)	743
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	4 cut(s)	361, 599, 971, 1129
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	3 cut(s)	369, 426, 612
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	5 cut(s)	384, 510, 564, 588, 1029
DpnII	GATC	5 cut(s)	382, 508, 562, 586, 1027
DraI	TTTAAA	1 cut(s)	768
DriI	GACNNNNNGTC	1 cut(s)	364
Eam1104I	CTCTTC	3 cut(s)	159, 660, 665
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EarI	CTCTTC	3 cut(s)	159, 660, 665
Eco130I	CCWWGG	2 cut(s)	279, 331
Eco47I	GGWCC	1 cut(s)	903
Eco57I	CTGAAG	2 cut(s)	684, 917
Eco72I	CACGTG	1 cut(s)	1049
Eco81I	CCTNAGG	2 cut(s)	426, 612
EcoRII	CCWGG	3 cut(s)	738, 772, 843
EcoT14I	CCWWGG	2 cut(s)	279, 331
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	279, 331
FaeI	CATG	4 cut(s)	364, 602, 974, 1132
FaqI	GGGAC	4 cut(s)	71, 96, 154, 932
FatI	CATG	4 cut(s)	360, 598, 970, 1128
FauNDI	CATATG	1 cut(s)	1138
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	7 cut(s)	28, 201, 204, 215, 723, 894, 1113
FokI	GGATG	4 cut(s)	163, 262, 556, 885
Fsp4HI	GCNGC	7 cut(s)	28, 201, 204, 215, 723, 894, 1113
FspBI	CTAG	4 cut(s)	147, 327, 525, 552
GlaI	GCGC	3 cut(s)	213, 337, 686
GluI	GCNGC	7 cut(s)	28, 201, 204, 215, 723, 894, 1113
GsaI	CCCAGC	1 cut(s)	175
HaeII	RGCGCY	2 cut(s)	339, 688
HaeIII	GGCC	2 cut(s)	102, 843
HapII	CCGG	2 cut(s)	45, 218
HgaI	GACGC	1 cut(s)	1082
HhaI	GCGC	3 cut(s)	214, 338, 687
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	4 cut(s)	364, 602, 974, 1132
Hin6I	GCGC	3 cut(s)	212, 336, 685
HinP1I	GCGC	3 cut(s)	212, 336, 685
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	6 cut(s)	7, 106, 365, 375, 1076, 1133
HpaII	CCGG	2 cut(s)	45, 218
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	5 cut(s)	249, 372, 664, 758, 835
Hpy188III	TCNNGA	3 cut(s)	405, 611, 1080
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	2 cut(s)	383, 720
HpyAV	CCTTC	2 cut(s)	338, 1153
HpyCH4III	ACNGT	2 cut(s)	817, 1006
HpyCH4IV	ACGT	1 cut(s)	1048
HpyCH4V	TGCA	4 cut(s)	725, 860, 998, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 209, 323, 857
HpyF3I	CTNAG	3 cut(s)	369, 426, 612
HpySE526I	ACGT	1 cut(s)	1048
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	364, 602, 974, 1132
HspAI	GCGC	3 cut(s)	212, 336, 685
KasI	GGCGCC	1 cut(s)	335
Kzo9I	GATC	5 cut(s)	382, 508, 562, 586, 1027
LmnI	GCTCC	2 cut(s)	541, 682
Lsp1109I	GCAGC	7 cut(s)	39, 187, 190, 201, 709, 880, 1099
LweI	GCATC	1 cut(s)	863
MaeI	CTAG	4 cut(s)	147, 327, 525, 552
MaeII	ACGT	1 cut(s)	1048
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	5 cut(s)	384, 510, 564, 588, 1029
MboI	GATC	5 cut(s)	382, 508, 562, 586, 1027
MboII	GAAGA	6 cut(s)	146, 377, 472, 475, 677, 682
MluCI	AATT	9 cut(s)	133, 295, 431, 621, 706, 883, 953, 1083, 1174
Mly113I	GGCGCC	1 cut(s)	336
MlyI	GAGTC	4 cut(s)	16, 374, 384, 1085
MmeI	TCCRAC	1 cut(s)	660
MseI	TTAA	2 cut(s)	767, 827
MslI	CAYNNNNRTG	1 cut(s)	975
MspI	CCGG	2 cut(s)	45, 218
MspR9I	CCNGG	3 cut(s)	740, 774, 845
Mva1269I	GAATGC	2 cut(s)	860, 1010
MvaI	CCWGG	3 cut(s)	740, 774, 845
MwoI	GCNNNNNNNGC	4 cut(s)	172, 209, 323, 857
NarI	GGCGCC	1 cut(s)	336
NdeI	CATATG	1 cut(s)	1138
NdeII	GATC	5 cut(s)	382, 508, 562, 586, 1027
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	4 cut(s)	364, 602, 974, 1132
NlaIV	GGNNCC	2 cut(s)	337, 905
NmuCI	GTSAC	1 cut(s)	8
PctI	GAATGC	2 cut(s)	860, 1010
PfeI	GAWTC	2 cut(s)	106, 1133
PkrI	GCNGC	7 cut(s)	29, 202, 205, 216, 724, 895, 1114
PleI	GAGTC	4 cut(s)	15, 373, 383, 1084
PluTI	GGCGCC	1 cut(s)	339
PmaCI	CACGTG	1 cut(s)	1049
PmlI	CACGTG	1 cut(s)	1049
PpsI	GAGTC	4 cut(s)	15, 373, 383, 1084
Ppu21I	YACGTR	1 cut(s)	1049
Psp6I	CCWGG	3 cut(s)	738, 772, 843
PspCI	CACGTG	1 cut(s)	1049
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	3 cut(s)	738, 772, 843
PspN4I	GGNNCC	2 cut(s)	337, 905
PspPI	GGNCC	1 cut(s)	903
PstI	CTGCAG	1 cut(s)	727
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
RseI	CAYNNNNRTG	1 cut(s)	975
SalI	GTCGAC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	767, 827
SatI	GCNGC	7 cut(s)	28, 201, 204, 215, 723, 894, 1113
Sau3AI	GATC	5 cut(s)	382, 508, 562, 586, 1027
Sau96I	GGNCC	1 cut(s)	903
SchI	GAGTC	4 cut(s)	16, 374, 384, 1085
ScrFI	CCNGG	3 cut(s)	740, 774, 845
SfaNI	GCATC	1 cut(s)	863
SfcI	CTRYAG	1 cut(s)	723
SfoI	GGCGCC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	903
SmiMI	CAYNNNNRTG	1 cut(s)	975
SmlI	CTYRAG	2 cut(s)	21, 413
SmoI	CTYRAG	2 cut(s)	21, 413
Sse9I	AATT	9 cut(s)	133, 295, 431, 621, 706, 883, 953, 1083, 1174
SsiI	CCGC	2 cut(s)	317, 324
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	4 cut(s)	147, 327, 525, 552
StyD4I	CCNGG	3 cut(s)	738, 772, 843
StyI	CCWWGG	2 cut(s)	279, 331
TaaI	ACNGT	2 cut(s)	817, 1006
TaiI	ACGT	1 cut(s)	1051
TaqI	TCGA	4 cut(s)	275, 381, 406, 718
TasI	AATT	9 cut(s)	133, 295, 431, 621, 706, 883, 953, 1083, 1174
TfiI	GAWTC	2 cut(s)	106, 1133
Tru1I	TTAA	2 cut(s)	767, 827
Tru9I	TTAA	2 cut(s)	767, 827
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	7 cut(s)	27, 200, 203, 214, 722, 893, 1112
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	3 cut(s)	357, 722, 965
TspGWI	ACGGA	2 cut(s)	760, 809
VpaK11BI	GGWCC	1 cut(s)	903
XapI	RAATTY	3 cut(s)	133, 431, 621
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	4 cut(s)	147, 327, 525, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.