Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004248

Physical Location & Seq

Genomic Coordinates Reverse (-)

5118070 .. 5118354

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG028400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCTGAAGTTTCAAGTGTTATTGCTTCTGCGCCGCAGGAGAGTACGTAGTAGTAGGGTTCGGATGGGAGAGAGAGGCGAGTGGGTATCGACCAAGAGAAATTTCGTGAATTACTTGCCCCAAGATGAGGCGGTTTCTGCTAGCCTAGGCGCCGACGAAGGTGGATTGGATGCCGTGGAGTCTCAGAGAGTCGTCGATCTTCTCAATAGAGAGCTTTCTCGATTGCTCAAGCTAAACCCTAAGGAATTTTGGAAACAAGGTATTGGTGGATTTGTCTTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

94

Amino Acids

10.79

Weight (kDa)

10.52

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004248)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g11520
rosa_laevigata	RLG00000018132 RLG00000018518 RLG00000030700 RLG00000032632 RLG00000034291
rosa_multiflora	Rmu_sc0000083.1_g000005 Rmu_sc0000108.1_g000001 Rmu_sc0000335.1_g000101 Rmu_sc0000847.1_g000017 Rmu_sc0002245.1_g000016 Rmu_sc0004336.1_g000040 Rmu_sc0005657.1_g000068 Rmu_sc0008232.1_g000016 Rmu_sc0010679.1_g000001 Rmu_sc0017310.1_g000001 Rmu_sc0029026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323820 Rroxscaffold_5G00364940
rosa_samantha	Rh1AG028400 Rh1DG039200 Rh4AG165000 Rh4CG034100 Rh4CG153600 Rh4CG177800 Rh5BG563100 Rh5DG465200 Rh6BG394000 Rh6CG198600 Rh6CG276300 Rh6CG410000 Rh7AG234200 Rh7DG332200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	2 cut(s)	34, 131
AcsI	RAATTY	2 cut(s)	100, 245
AcuI	CTGAAG	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	2 cut(s)	214, 232
AluI	AGCT	2 cut(s)	214, 232
Alw26I	GTCTC	1 cut(s)	186
ApoI	RAATTY	2 cut(s)	100, 245
AspA2I	CCTAGG	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	33, 152
AsuNHI	GCTAGC	1 cut(s)	140
AvrII	CCTAGG	1 cut(s)	145
AxyI	CCTNAGG	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	149
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	141, 146
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	1 cut(s)	34
BlnI	CCTAGG	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	151
BmsI	GCATC	1 cut(s)	160
BmtI	GCTAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	145, 174
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse21I	CCTNAGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	145, 174
BseGI	GGATG	2 cut(s)	69, 175
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	197
BshNI	GGYRCC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	2 cut(s)	34, 131
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	151
BspOI	GCTAGC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	145, 174
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	183, 240
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	69, 175
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	33, 152
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstSNI	TACGTA	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	69, 175
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	2 cut(s)	33, 152
Csp6I	GTAC	1 cut(s)	44
CviJI	RGCY	3 cut(s)	144, 214, 232
CviKI_1	RGCY	3 cut(s)	144, 214, 232
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	2 cut(s)	183, 240
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco105I	TACGTA	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	145
FaiI	YATR	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	2 cut(s)	76, 182
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	2 cut(s)	141, 146
GlaI	GCGC	2 cut(s)	32, 151
GluI	GCNGC	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	153
HhaI	GCGC	2 cut(s)	33, 152
Hin1I	GRCGYC	1 cut(s)	150
Hin6I	GCGC	2 cut(s)	31, 150
HinP1I	GCGC	2 cut(s)	31, 150
HinfI	GANTC	2 cut(s)	179, 189
Hpy188I	TCNGA	2 cut(s)	63, 186
Hpy188III	TCNNGA	2 cut(s)	106, 219
Hpy99I	CGWCG	2 cut(s)	158, 197
HpyAV	CCTTC	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	183, 240
HpySE526I	ACGT	1 cut(s)	46
Hsp92I	GRCGYC	1 cut(s)	150
HspAI	GCGC	2 cut(s)	31, 150
KasI	GGCGCC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	1 cut(s)	22
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	2 cut(s)	141, 146
MaeII	ACGT	1 cut(s)	46
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	1 cut(s)	191
MluCI	AATT	3 cut(s)	100, 109, 245
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	188, 198
MnlI	CCTC	2 cut(s)	68, 121
MwoI	GCNNNNNNNGC	1 cut(s)	137
NarI	GGCGCC	1 cut(s)	150
NdeII	GATC	1 cut(s)	196
NheI	GCTAGC	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	2 cut(s)	187, 197
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	2 cut(s)	187, 197
Ppu21I	YACGTR	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	188, 198
SetI	ASST	5 cut(s)	49, 163, 216, 234, 262
SfaNI	GCATC	1 cut(s)	160
SfoI	GGCGCC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SnaBI	TACGTA	1 cut(s)	47
Sse9I	AATT	3 cut(s)	100, 109, 245
SsiI	CCGC	2 cut(s)	34, 131
SspDI	GGCGCC	1 cut(s)	149
SspMI	CTAG	2 cut(s)	141, 146
StyI	CCWWGG	1 cut(s)	145
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	3 cut(s)	89, 195, 220
TasI	AATT	3 cut(s)	100, 109, 245
TauI	GCSGC	1 cut(s)	36
XapI	RAATTY	2 cut(s)	100, 245
XmaJI	CCTAGG	1 cut(s)	145
XspI	CTAG	2 cut(s)	141, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.